Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4723 and Psyr_4724 are separated by 50 nucleotides Psyr_4724 and Psyr_4725 are separated by 163 nucleotides Psyr_4725 and Psyr_4726 are separated by 190 nucleotides
Psyr_4723: Psyr_4723 - hypothetical protein, at 5,601,523 to 5,602,581
_4723
Psyr_4724: Psyr_4724 - Phospholipid/glycerol acyltransferase, at 5,602,632 to 5,603,555
_4724
Psyr_4725: Psyr_4725 - Protein of unknown function DUF785, at 5,603,719 to 5,604,222
_4725
Psyr_4726: Psyr_4726 - hypothetical protein, at 5,604,413 to 5,605,573
_4726
Position (kb) 5602
5603
5604 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 5601.676 kb on + strand, within Psyr_4723 at 5601.677 kb on - strand, within Psyr_4723 at 5601.740 kb on + strand, within Psyr_4723 at 5601.740 kb on + strand, within Psyr_4723 at 5601.740 kb on + strand, within Psyr_4723 at 5601.741 kb on - strand, within Psyr_4723 at 5601.765 kb on - strand, within Psyr_4723 at 5601.767 kb on + strand, within Psyr_4723 at 5601.768 kb on - strand, within Psyr_4723 at 5601.768 kb on - strand, within Psyr_4723 at 5601.861 kb on + strand, within Psyr_4723 at 5601.861 kb on + strand, within Psyr_4723 at 5601.924 kb on + strand, within Psyr_4723 at 5601.924 kb on + strand, within Psyr_4723 at 5601.924 kb on + strand, within Psyr_4723 at 5601.924 kb on + strand, within Psyr_4723 at 5601.925 kb on - strand, within Psyr_4723 at 5601.937 kb on + strand, within Psyr_4723 at 5601.938 kb on - strand, within Psyr_4723 at 5602.030 kb on + strand, within Psyr_4723 at 5602.031 kb on - strand, within Psyr_4723 at 5602.031 kb on - strand, within Psyr_4723 at 5602.031 kb on - strand, within Psyr_4723 at 5602.031 kb on - strand, within Psyr_4723 at 5602.077 kb on - strand, within Psyr_4723 at 5602.181 kb on + strand, within Psyr_4723 at 5602.181 kb on + strand, within Psyr_4723 at 5602.181 kb on + strand, within Psyr_4723 at 5602.181 kb on + strand, within Psyr_4723 at 5602.182 kb on - strand, within Psyr_4723 at 5602.182 kb on - strand, within Psyr_4723 at 5602.182 kb on - strand, within Psyr_4723 at 5602.182 kb on - strand, within Psyr_4723 at 5602.271 kb on + strand, within Psyr_4723 at 5602.384 kb on + strand, within Psyr_4723 at 5602.385 kb on - strand, within Psyr_4723 at 5602.429 kb on + strand, within Psyr_4723 at 5602.429 kb on + strand, within Psyr_4723 at 5602.430 kb on - strand, within Psyr_4723 at 5602.430 kb on - strand, within Psyr_4723 at 5602.492 kb on + strand at 5602.492 kb on + strand at 5602.493 kb on - strand at 5602.493 kb on - strand at 5602.493 kb on - strand at 5602.521 kb on - strand at 5602.526 kb on + strand at 5602.527 kb on - strand at 5602.527 kb on - strand at 5602.527 kb on - strand at 5602.528 kb on + strand at 5602.528 kb on + strand at 5602.529 kb on - strand at 5602.582 kb on + strand at 5602.617 kb on + strand at 5602.617 kb on + strand at 5602.617 kb on + strand at 5602.618 kb on - strand at 5602.618 kb on - strand at 5602.618 kb on - strand at 5602.725 kb on + strand, within Psyr_4724 at 5602.726 kb on - strand, within Psyr_4724 at 5602.726 kb on - strand, within Psyr_4724 at 5602.852 kb on + strand, within Psyr_4724 at 5603.003 kb on - strand, within Psyr_4724 at 5603.275 kb on + strand, within Psyr_4724 at 5603.275 kb on + strand, within Psyr_4724 at 5603.276 kb on - strand, within Psyr_4724 at 5603.276 kb on - strand, within Psyr_4724 at 5603.276 kb on - strand, within Psyr_4724 at 5603.276 kb on - strand, within Psyr_4724 at 5603.475 kb on - strand at 5603.475 kb on - strand at 5603.475 kb on - strand at 5603.485 kb on - strand at 5603.556 kb on + strand at 5603.556 kb on + strand at 5603.557 kb on - strand at 5603.560 kb on - strand at 5603.560 kb on - strand at 5603.585 kb on + strand at 5603.585 kb on + strand at 5603.586 kb on - strand at 5603.586 kb on - strand at 5603.586 kb on - strand at 5603.593 kb on + strand at 5603.593 kb on + strand at 5603.593 kb on + strand at 5603.593 kb on + strand at 5603.593 kb on + strand at 5603.593 kb on + strand at 5603.594 kb on - strand at 5603.594 kb on - strand at 5603.594 kb on - strand at 5603.594 kb on - strand at 5603.597 kb on + strand at 5603.598 kb on - strand at 5603.622 kb on + strand at 5603.623 kb on - strand at 5603.639 kb on + strand at 5603.639 kb on + strand at 5603.639 kb on + strand at 5603.639 kb on + strand at 5603.640 kb on - strand at 5603.640 kb on - strand at 5603.640 kb on - strand at 5603.640 kb on - strand at 5603.653 kb on + strand at 5603.671 kb on + strand at 5603.671 kb on + strand at 5603.700 kb on - strand at 5603.738 kb on + strand at 5603.785 kb on + strand, within Psyr_4725 at 5603.785 kb on + strand, within Psyr_4725 at 5603.785 kb on + strand, within Psyr_4725 at 5603.785 kb on + strand, within Psyr_4725 at 5603.785 kb on + strand, within Psyr_4725 at 5603.785 kb on + strand, within Psyr_4725 at 5603.785 kb on + strand, within Psyr_4725 at 5603.786 kb on - strand, within Psyr_4725 at 5603.786 kb on - strand, within Psyr_4725 at 5603.786 kb on - strand, within Psyr_4725 at 5603.786 kb on - strand, within Psyr_4725 at 5603.786 kb on - strand, within Psyr_4725 at 5603.919 kb on - strand, within Psyr_4725 at 5603.959 kb on + strand, within Psyr_4725 at 5603.959 kb on + strand, within Psyr_4725 at 5603.959 kb on + strand, within Psyr_4725 at 5603.959 kb on + strand, within Psyr_4725 at 5603.959 kb on + strand, within Psyr_4725 at 5603.960 kb on - strand, within Psyr_4725 at 5603.960 kb on - strand, within Psyr_4725 at 5603.960 kb on - strand, within Psyr_4725 at 5603.960 kb on - strand, within Psyr_4725 at 5603.960 kb on - strand, within Psyr_4725 at 5603.960 kb on - strand, within Psyr_4725 at 5604.091 kb on - strand, within Psyr_4725 at 5604.091 kb on - strand, within Psyr_4725 at 5604.091 kb on - strand, within Psyr_4725 at 5604.197 kb on - strand at 5604.198 kb on + strand at 5604.199 kb on - strand at 5604.232 kb on + strand at 5604.232 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 5,601,676 + Psyr_4723 0.14 -2.3 5,601,677 - Psyr_4723 0.15 +1.7 5,601,740 + Psyr_4723 0.20 -0.1 5,601,740 + Psyr_4723 0.20 +0.1 5,601,740 + Psyr_4723 0.20 +0.5 5,601,741 - Psyr_4723 0.21 +0.5 5,601,765 - Psyr_4723 0.23 +2.7 5,601,767 + Psyr_4723 0.23 +2.3 5,601,768 - Psyr_4723 0.23 -1.1 5,601,768 - Psyr_4723 0.23 -2.4 5,601,861 + Psyr_4723 0.32 -1.9 5,601,861 + Psyr_4723 0.32 -2.2 5,601,924 + Psyr_4723 0.38 -3.3 5,601,924 + Psyr_4723 0.38 -0.4 5,601,924 + Psyr_4723 0.38 +4.0 5,601,924 + Psyr_4723 0.38 -2.3 5,601,925 - Psyr_4723 0.38 -1.7 5,601,937 + Psyr_4723 0.39 -1.6 5,601,938 - Psyr_4723 0.39 -1.9 5,602,030 + Psyr_4723 0.48 -3.0 5,602,031 - Psyr_4723 0.48 +0.1 5,602,031 - Psyr_4723 0.48 +1.7 5,602,031 - Psyr_4723 0.48 +2.5 5,602,031 - Psyr_4723 0.48 +0.1 5,602,077 - Psyr_4723 0.52 +2.1 5,602,181 + Psyr_4723 0.62 -0.9 5,602,181 + Psyr_4723 0.62 -0.1 5,602,181 + Psyr_4723 0.62 -1.7 5,602,181 + Psyr_4723 0.62 +2.1 5,602,182 - Psyr_4723 0.62 +3.0 5,602,182 - Psyr_4723 0.62 +2.1 5,602,182 - Psyr_4723 0.62 +3.1 5,602,182 - Psyr_4723 0.62 +3.1 5,602,271 + Psyr_4723 0.71 +3.7 5,602,384 + Psyr_4723 0.81 -0.2 5,602,385 - Psyr_4723 0.81 +2.5 5,602,429 + Psyr_4723 0.86 -1.5 5,602,429 + Psyr_4723 0.86 -1.9 5,602,430 - Psyr_4723 0.86 -0.8 5,602,430 - Psyr_4723 0.86 +0.0 5,602,492 + -2.7 5,602,492 + +3.1 5,602,493 - -0.9 5,602,493 - -0.2 5,602,493 - +3.3 5,602,521 - +3.6 5,602,526 + -1.4 5,602,527 - -0.6 5,602,527 - -1.2 5,602,527 - -1.9 5,602,528 + +4.3 5,602,528 + -1.0 5,602,529 - -0.6 5,602,582 + +0.2 5,602,617 + -0.0 5,602,617 + -0.7 5,602,617 + +3.0 5,602,618 - -1.6 5,602,618 - +3.1 5,602,618 - -0.3 5,602,725 + Psyr_4724 0.10 +4.6 5,602,726 - Psyr_4724 0.10 +3.7 5,602,726 - Psyr_4724 0.10 +1.7 5,602,852 + Psyr_4724 0.24 -1.4 5,603,003 - Psyr_4724 0.40 +0.3 5,603,275 + Psyr_4724 0.70 -1.4 5,603,275 + Psyr_4724 0.70 +1.1 5,603,276 - Psyr_4724 0.70 -0.1 5,603,276 - Psyr_4724 0.70 +0.1 5,603,276 - Psyr_4724 0.70 +3.6 5,603,276 - Psyr_4724 0.70 +0.8 5,603,475 - -0.4 5,603,475 - +3.1 5,603,475 - -2.8 5,603,485 - -3.2 5,603,556 + +2.1 5,603,556 + -0.4 5,603,557 - -0.5 5,603,560 - +2.7 5,603,560 - +2.5 5,603,585 + +4.7 5,603,585 + +0.6 5,603,586 - -1.4 5,603,586 - -1.0 5,603,586 - +0.9 5,603,593 + +2.5 5,603,593 + +0.1 5,603,593 + -0.9 5,603,593 + +2.5 5,603,593 + -0.4 5,603,593 + +4.3 5,603,594 - +2.0 5,603,594 - +4.1 5,603,594 - +3.3 5,603,594 - -1.1 5,603,597 + -0.2 5,603,598 - -0.3 5,603,622 + -0.6 5,603,623 - -1.1 5,603,639 + -0.5 5,603,639 + -5.5 5,603,639 + +2.7 5,603,639 + +2.7 5,603,640 - -0.9 5,603,640 - -1.0 5,603,640 - +2.1 5,603,640 - +0.4 5,603,653 + +3.5 5,603,671 + -0.1 5,603,671 + +0.3 5,603,700 - +0.3 5,603,738 + -0.7 5,603,785 + Psyr_4725 0.13 -0.5 5,603,785 + Psyr_4725 0.13 -0.1 5,603,785 + Psyr_4725 0.13 -1.2 5,603,785 + Psyr_4725 0.13 -0.7 5,603,785 + Psyr_4725 0.13 +3.7 5,603,785 + Psyr_4725 0.13 +1.5 5,603,785 + Psyr_4725 0.13 -1.1 5,603,786 - Psyr_4725 0.13 -0.3 5,603,786 - Psyr_4725 0.13 -1.8 5,603,786 - Psyr_4725 0.13 -2.7 5,603,786 - Psyr_4725 0.13 +1.1 5,603,786 - Psyr_4725 0.13 -0.1 5,603,919 - Psyr_4725 0.40 -0.0 5,603,959 + Psyr_4725 0.48 +3.3 5,603,959 + Psyr_4725 0.48 -0.2 5,603,959 + Psyr_4725 0.48 -0.8 5,603,959 + Psyr_4725 0.48 +1.7 5,603,959 + Psyr_4725 0.48 +3.5 5,603,960 - Psyr_4725 0.48 -1.1 5,603,960 - Psyr_4725 0.48 -1.5 5,603,960 - Psyr_4725 0.48 +1.2 5,603,960 - Psyr_4725 0.48 -1.7 5,603,960 - Psyr_4725 0.48 -1.4 5,603,960 - Psyr_4725 0.48 +1.1 5,604,091 - Psyr_4725 0.74 -0.0 5,604,091 - Psyr_4725 0.74 +1.4 5,604,091 - Psyr_4725 0.74 +0.5 5,604,197 - -2.1 5,604,198 + -1.0 5,604,199 - +2.5 5,604,232 + +0.4 5,604,232 + -0.1
Or see this region's nucleotide sequence