Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4691 and Psyr_4692 are separated by 25 nucleotides Psyr_4692 and Psyr_4693 overlap by 4 nucleotides Psyr_4693 and Psyr_4694 overlap by 4 nucleotides
Psyr_4691: Psyr_4691 - Metallophosphoesterase, at 5,559,895 to 5,560,728
_4691
Psyr_4692: Psyr_4692 - ABC transporter, at 5,560,754 to 5,561,785
_4692
Psyr_4693: Psyr_4693 - Binding-protein-dependent transport systems inner membrane component, at 5,561,782 to 5,562,576
_4693
Psyr_4694: Psyr_4694 - Binding-protein-dependent transport systems inner membrane component, at 5,562,573 to 5,563,442
_4694
Position (kb) 5560
5561
5562 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5559.798 kb on + strand at 5559.799 kb on - strand at 5559.799 kb on - strand at 5559.810 kb on + strand at 5559.811 kb on - strand at 5559.811 kb on - strand at 5559.854 kb on + strand at 5559.855 kb on - strand at 5559.920 kb on + strand at 5559.920 kb on + strand at 5559.920 kb on + strand at 5559.921 kb on - strand at 5559.921 kb on - strand at 5559.921 kb on - strand at 5559.941 kb on + strand at 5559.942 kb on - strand at 5559.942 kb on - strand at 5559.942 kb on - strand at 5559.942 kb on - strand at 5560.005 kb on - strand, within Psyr_4691 at 5560.005 kb on - strand, within Psyr_4691 at 5560.274 kb on + strand, within Psyr_4691 at 5560.274 kb on + strand, within Psyr_4691 at 5560.274 kb on + strand, within Psyr_4691 at 5560.274 kb on + strand, within Psyr_4691 at 5560.274 kb on + strand, within Psyr_4691 at 5560.274 kb on + strand, within Psyr_4691 at 5560.274 kb on + strand, within Psyr_4691 at 5560.274 kb on + strand, within Psyr_4691 at 5560.275 kb on - strand, within Psyr_4691 at 5560.275 kb on - strand, within Psyr_4691 at 5560.275 kb on - strand, within Psyr_4691 at 5560.275 kb on - strand, within Psyr_4691 at 5560.275 kb on - strand, within Psyr_4691 at 5560.275 kb on - strand, within Psyr_4691 at 5560.320 kb on - strand, within Psyr_4691 at 5560.430 kb on + strand, within Psyr_4691 at 5560.430 kb on + strand, within Psyr_4691 at 5560.430 kb on + strand, within Psyr_4691 at 5560.430 kb on + strand, within Psyr_4691 at 5560.431 kb on - strand, within Psyr_4691 at 5560.431 kb on - strand, within Psyr_4691 at 5560.661 kb on + strand at 5560.661 kb on + strand at 5560.661 kb on + strand at 5560.661 kb on + strand at 5560.662 kb on - strand at 5560.662 kb on - strand at 5560.662 kb on - strand at 5560.662 kb on - strand at 5560.662 kb on - strand at 5560.710 kb on + strand at 5560.711 kb on - strand at 5560.731 kb on + strand at 5560.732 kb on - strand at 5560.732 kb on - strand at 5560.732 kb on - strand at 5560.732 kb on - strand at 5560.732 kb on - strand at 5560.769 kb on - strand at 5560.819 kb on - strand at 5560.972 kb on - strand, within Psyr_4692 at 5560.972 kb on - strand, within Psyr_4692 at 5560.986 kb on - strand, within Psyr_4692 at 5561.112 kb on + strand, within Psyr_4692 at 5561.113 kb on - strand, within Psyr_4692 at 5561.113 kb on - strand, within Psyr_4692 at 5561.446 kb on + strand, within Psyr_4692 at 5561.446 kb on + strand, within Psyr_4692 at 5561.491 kb on + strand, within Psyr_4692 at 5561.526 kb on + strand, within Psyr_4692 at 5561.526 kb on + strand, within Psyr_4692 at 5561.526 kb on + strand, within Psyr_4692 at 5561.527 kb on - strand, within Psyr_4692 at 5561.527 kb on - strand, within Psyr_4692 at 5561.527 kb on - strand, within Psyr_4692 at 5561.720 kb on + strand at 5561.720 kb on + strand at 5561.721 kb on - strand at 5561.870 kb on + strand, within Psyr_4693 at 5561.870 kb on + strand, within Psyr_4693 at 5561.870 kb on + strand, within Psyr_4693 at 5561.903 kb on + strand, within Psyr_4693 at 5561.903 kb on + strand, within Psyr_4693 at 5561.903 kb on + strand, within Psyr_4693 at 5561.903 kb on + strand, within Psyr_4693 at 5562.030 kb on + strand, within Psyr_4693 at 5562.030 kb on + strand, within Psyr_4693 at 5562.030 kb on + strand, within Psyr_4693 at 5562.031 kb on - strand, within Psyr_4693 at 5562.218 kb on + strand, within Psyr_4693 at 5562.326 kb on + strand, within Psyr_4693 at 5562.408 kb on - strand, within Psyr_4693 at 5562.468 kb on - strand, within Psyr_4693 at 5562.593 kb on + strand at 5562.602 kb on + strand at 5562.602 kb on + strand at 5562.603 kb on - strand at 5562.682 kb on + strand, within Psyr_4694 at 5562.700 kb on + strand, within Psyr_4694 at 5562.701 kb on - strand, within Psyr_4694 at 5562.701 kb on - strand, within Psyr_4694 at 5562.701 kb on - strand, within Psyr_4694 at 5562.701 kb on - strand, within Psyr_4694 at 5562.701 kb on - strand, within Psyr_4694 at 5562.701 kb on - strand, within Psyr_4694
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 5,559,798 + -0.2 5,559,799 - +1.1 5,559,799 - -1.9 5,559,810 + -2.0 5,559,811 - -2.8 5,559,811 - -0.2 5,559,854 + +0.4 5,559,855 - -1.6 5,559,920 + -1.4 5,559,920 + -0.1 5,559,920 + -0.3 5,559,921 - +2.7 5,559,921 - -0.7 5,559,921 - +3.8 5,559,941 + +1.1 5,559,942 - -1.4 5,559,942 - -0.9 5,559,942 - -0.5 5,559,942 - +3.0 5,560,005 - Psyr_4691 0.13 +1.7 5,560,005 - Psyr_4691 0.13 +0.1 5,560,274 + Psyr_4691 0.45 +3.7 5,560,274 + Psyr_4691 0.45 -0.7 5,560,274 + Psyr_4691 0.45 -0.9 5,560,274 + Psyr_4691 0.45 -3.3 5,560,274 + Psyr_4691 0.45 +0.5 5,560,274 + Psyr_4691 0.45 +2.7 5,560,274 + Psyr_4691 0.45 +0.1 5,560,274 + Psyr_4691 0.45 +0.4 5,560,275 - Psyr_4691 0.46 -3.8 5,560,275 - Psyr_4691 0.46 +4.1 5,560,275 - Psyr_4691 0.46 +0.4 5,560,275 - Psyr_4691 0.46 -2.2 5,560,275 - Psyr_4691 0.46 -2.1 5,560,275 - Psyr_4691 0.46 -0.3 5,560,320 - Psyr_4691 0.51 -0.3 5,560,430 + Psyr_4691 0.64 +0.1 5,560,430 + Psyr_4691 0.64 +2.7 5,560,430 + Psyr_4691 0.64 +0.1 5,560,430 + Psyr_4691 0.64 +2.7 5,560,431 - Psyr_4691 0.64 -1.8 5,560,431 - Psyr_4691 0.64 +1.7 5,560,661 + -0.1 5,560,661 + +4.1 5,560,661 + +3.3 5,560,661 + +0.7 5,560,662 - +4.5 5,560,662 - -1.9 5,560,662 - +1.4 5,560,662 - +4.5 5,560,662 - -0.3 5,560,710 + -1.4 5,560,711 - +0.3 5,560,731 + +4.4 5,560,732 - +4.1 5,560,732 - -0.1 5,560,732 - -2.3 5,560,732 - -1.0 5,560,732 - -1.2 5,560,769 - -0.7 5,560,819 - +0.1 5,560,972 - Psyr_4692 0.21 +0.3 5,560,972 - Psyr_4692 0.21 -0.0 5,560,986 - Psyr_4692 0.22 -1.0 5,561,112 + Psyr_4692 0.35 +1.1 5,561,113 - Psyr_4692 0.35 +3.1 5,561,113 - Psyr_4692 0.35 +0.4 5,561,446 + Psyr_4692 0.67 +0.0 5,561,446 + Psyr_4692 0.67 -1.2 5,561,491 + Psyr_4692 0.71 +0.0 5,561,526 + Psyr_4692 0.75 -0.2 5,561,526 + Psyr_4692 0.75 +0.5 5,561,526 + Psyr_4692 0.75 +1.7 5,561,527 - Psyr_4692 0.75 +4.7 5,561,527 - Psyr_4692 0.75 -0.1 5,561,527 - Psyr_4692 0.75 +3.8 5,561,720 + -1.7 5,561,720 + -1.1 5,561,721 - +1.3 5,561,870 + Psyr_4693 0.11 +4.0 5,561,870 + Psyr_4693 0.11 +0.1 5,561,870 + Psyr_4693 0.11 -0.3 5,561,903 + Psyr_4693 0.15 -2.2 5,561,903 + Psyr_4693 0.15 -0.7 5,561,903 + Psyr_4693 0.15 -2.9 5,561,903 + Psyr_4693 0.15 -1.1 5,562,030 + Psyr_4693 0.31 -1.7 5,562,030 + Psyr_4693 0.31 +3.5 5,562,030 + Psyr_4693 0.31 -1.3 5,562,031 - Psyr_4693 0.31 +0.1 5,562,218 + Psyr_4693 0.55 +1.7 5,562,326 + Psyr_4693 0.68 -0.3 5,562,408 - Psyr_4693 0.79 -0.7 5,562,468 - Psyr_4693 0.86 +2.7 5,562,593 + -0.4 5,562,602 + +3.1 5,562,602 + -1.7 5,562,603 - -0.4 5,562,682 + Psyr_4694 0.13 -2.3 5,562,700 + Psyr_4694 0.15 -1.0 5,562,701 - Psyr_4694 0.15 +3.3 5,562,701 - Psyr_4694 0.15 +1.7 5,562,701 - Psyr_4694 0.15 -2.2 5,562,701 - Psyr_4694 0.15 -0.1 5,562,701 - Psyr_4694 0.15 -1.6 5,562,701 - Psyr_4694 0.15 +0.0
Or see this region's nucleotide sequence