Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4439 and Psyr_4440 are separated by 75 nucleotides Psyr_4440 and Psyr_4441 are separated by 327 nucleotides
Psyr_4439: Psyr_4439 - histidine kinase, at 5,305,442 to 5,306,572
_4439
Psyr_4440: Psyr_4440 - Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal, at 5,306,648 to 5,307,592
_4440
Psyr_4441: Psyr_4441 - heat shock protein YegD, at 5,307,920 to 5,309,185
_4441
Position (kb) 5306
5307
5308 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 5305.780 kb on - strand, within Psyr_4439 at 5305.875 kb on - strand, within Psyr_4439 at 5306.012 kb on + strand, within Psyr_4439 at 5306.013 kb on - strand, within Psyr_4439 at 5306.080 kb on - strand, within Psyr_4439 at 5306.120 kb on + strand, within Psyr_4439 at 5306.120 kb on + strand, within Psyr_4439 at 5306.120 kb on + strand, within Psyr_4439 at 5306.120 kb on + strand, within Psyr_4439 at 5306.120 kb on + strand, within Psyr_4439 at 5306.121 kb on - strand, within Psyr_4439 at 5306.121 kb on - strand, within Psyr_4439 at 5306.121 kb on - strand, within Psyr_4439 at 5306.121 kb on - strand, within Psyr_4439 at 5306.121 kb on - strand, within Psyr_4439 at 5306.121 kb on - strand, within Psyr_4439 at 5306.121 kb on - strand, within Psyr_4439 at 5306.121 kb on - strand, within Psyr_4439 at 5306.121 kb on - strand, within Psyr_4439 at 5306.121 kb on - strand, within Psyr_4439 at 5306.202 kb on + strand, within Psyr_4439 at 5306.202 kb on + strand, within Psyr_4439 at 5306.202 kb on + strand, within Psyr_4439 at 5306.202 kb on + strand, within Psyr_4439 at 5306.202 kb on + strand, within Psyr_4439 at 5306.202 kb on + strand, within Psyr_4439 at 5306.202 kb on + strand, within Psyr_4439 at 5306.202 kb on + strand, within Psyr_4439 at 5306.202 kb on + strand, within Psyr_4439 at 5306.202 kb on + strand, within Psyr_4439 at 5306.203 kb on - strand, within Psyr_4439 at 5306.203 kb on - strand, within Psyr_4439 at 5306.203 kb on - strand, within Psyr_4439 at 5306.203 kb on - strand, within Psyr_4439 at 5306.203 kb on - strand, within Psyr_4439 at 5306.203 kb on - strand, within Psyr_4439 at 5306.203 kb on - strand, within Psyr_4439 at 5306.203 kb on - strand, within Psyr_4439 at 5306.203 kb on - strand, within Psyr_4439 at 5306.203 kb on - strand, within Psyr_4439 at 5306.203 kb on - strand, within Psyr_4439 at 5306.203 kb on - strand, within Psyr_4439 at 5306.203 kb on - strand, within Psyr_4439 at 5306.304 kb on + strand, within Psyr_4439 at 5306.341 kb on - strand, within Psyr_4439 at 5306.594 kb on + strand at 5306.761 kb on - strand, within Psyr_4440 at 5306.988 kb on + strand, within Psyr_4440 at 5306.989 kb on - strand, within Psyr_4440 at 5307.046 kb on + strand, within Psyr_4440 at 5307.100 kb on + strand, within Psyr_4440 at 5307.400 kb on - strand, within Psyr_4440 at 5307.400 kb on - strand, within Psyr_4440 at 5307.429 kb on - strand, within Psyr_4440 at 5307.435 kb on + strand, within Psyr_4440 at 5307.435 kb on + strand, within Psyr_4440 at 5307.435 kb on + strand, within Psyr_4440 at 5307.435 kb on + strand, within Psyr_4440 at 5307.436 kb on - strand, within Psyr_4440 at 5307.436 kb on - strand, within Psyr_4440 at 5307.498 kb on + strand at 5307.498 kb on + strand at 5307.498 kb on + strand at 5307.499 kb on - strand at 5307.499 kb on - strand at 5307.499 kb on - strand at 5307.499 kb on - strand at 5307.566 kb on + strand at 5307.566 kb on + strand at 5307.566 kb on + strand at 5307.566 kb on + strand at 5307.566 kb on + strand at 5307.566 kb on + strand at 5307.566 kb on + strand at 5307.566 kb on + strand at 5307.566 kb on + strand at 5307.566 kb on + strand at 5307.567 kb on - strand at 5307.567 kb on - strand at 5307.573 kb on + strand at 5307.573 kb on + strand at 5307.573 kb on + strand at 5307.573 kb on + strand at 5307.574 kb on - strand at 5307.574 kb on - strand at 5307.574 kb on - strand at 5307.576 kb on + strand at 5307.576 kb on + strand at 5307.577 kb on - strand at 5307.577 kb on - strand at 5307.594 kb on + strand at 5307.595 kb on - strand at 5307.631 kb on + strand at 5307.632 kb on - strand at 5307.680 kb on - strand at 5307.683 kb on + strand at 5307.684 kb on - strand at 5307.696 kb on + strand at 5307.696 kb on + strand at 5307.698 kb on + strand at 5307.699 kb on - strand at 5307.704 kb on + strand at 5307.704 kb on + strand at 5307.705 kb on - strand at 5307.733 kb on + strand at 5307.746 kb on + strand at 5307.746 kb on + strand at 5307.746 kb on + strand at 5307.746 kb on + strand at 5307.746 kb on + strand at 5307.746 kb on + strand at 5307.746 kb on + strand at 5307.746 kb on + strand at 5307.746 kb on + strand at 5307.746 kb on + strand at 5307.746 kb on + strand at 5307.746 kb on + strand at 5307.746 kb on + strand at 5307.746 kb on + strand at 5307.746 kb on + strand at 5307.747 kb on - strand at 5307.747 kb on - strand at 5307.747 kb on - strand at 5307.747 kb on - strand at 5307.747 kb on - strand at 5307.747 kb on - strand at 5307.747 kb on - strand at 5307.747 kb on - strand at 5307.779 kb on + strand at 5307.780 kb on - strand at 5307.825 kb on + strand at 5307.825 kb on + strand at 5307.826 kb on - strand at 5307.835 kb on + strand at 5307.836 kb on - strand at 5307.836 kb on - strand at 5307.836 kb on - strand at 5307.836 kb on - strand at 5307.836 kb on - strand at 5307.839 kb on + strand at 5307.839 kb on + strand at 5307.839 kb on + strand at 5307.839 kb on + strand at 5307.839 kb on + strand at 5307.839 kb on + strand at 5307.839 kb on + strand at 5307.839 kb on + strand at 5307.840 kb on - strand at 5307.840 kb on - strand at 5307.840 kb on - strand at 5307.840 kb on - strand at 5307.840 kb on - strand at 5307.840 kb on - strand at 5307.840 kb on - strand at 5307.840 kb on - strand at 5307.840 kb on - strand at 5307.840 kb on - strand at 5307.841 kb on + strand at 5307.842 kb on - strand at 5307.842 kb on - strand at 5307.842 kb on - strand at 5307.881 kb on + strand at 5307.881 kb on + strand at 5307.881 kb on + strand at 5307.881 kb on + strand at 5307.912 kb on + strand at 5307.912 kb on + strand at 5307.912 kb on + strand at 5307.913 kb on - strand at 5307.913 kb on - strand at 5307.913 kb on - strand at 5307.913 kb on - strand at 5308.037 kb on - strand at 5308.086 kb on - strand, within Psyr_4441 at 5308.086 kb on - strand, within Psyr_4441 at 5308.121 kb on + strand, within Psyr_4441 at 5308.122 kb on - strand, within Psyr_4441 at 5308.122 kb on - strand, within Psyr_4441 at 5308.122 kb on - strand, within Psyr_4441
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 5,305,780 - Psyr_4439 0.30 -1.2 5,305,875 - Psyr_4439 0.38 -0.0 5,306,012 + Psyr_4439 0.50 +3.9 5,306,013 - Psyr_4439 0.50 -0.2 5,306,080 - Psyr_4439 0.56 -0.8 5,306,120 + Psyr_4439 0.60 -1.7 5,306,120 + Psyr_4439 0.60 -0.2 5,306,120 + Psyr_4439 0.60 +3.3 5,306,120 + Psyr_4439 0.60 -1.2 5,306,120 + Psyr_4439 0.60 -0.8 5,306,121 - Psyr_4439 0.60 -3.7 5,306,121 - Psyr_4439 0.60 +3.6 5,306,121 - Psyr_4439 0.60 +3.6 5,306,121 - Psyr_4439 0.60 +1.2 5,306,121 - Psyr_4439 0.60 -0.5 5,306,121 - Psyr_4439 0.60 +2.9 5,306,121 - Psyr_4439 0.60 -0.6 5,306,121 - Psyr_4439 0.60 +3.0 5,306,121 - Psyr_4439 0.60 +1.2 5,306,121 - Psyr_4439 0.60 -1.6 5,306,202 + Psyr_4439 0.67 -3.4 5,306,202 + Psyr_4439 0.67 -0.4 5,306,202 + Psyr_4439 0.67 +3.2 5,306,202 + Psyr_4439 0.67 +1.8 5,306,202 + Psyr_4439 0.67 +2.5 5,306,202 + Psyr_4439 0.67 +0.2 5,306,202 + Psyr_4439 0.67 -0.3 5,306,202 + Psyr_4439 0.67 -0.3 5,306,202 + Psyr_4439 0.67 -0.9 5,306,202 + Psyr_4439 0.67 +0.1 5,306,203 - Psyr_4439 0.67 +2.5 5,306,203 - Psyr_4439 0.67 +3.0 5,306,203 - Psyr_4439 0.67 +3.0 5,306,203 - Psyr_4439 0.67 -4.0 5,306,203 - Psyr_4439 0.67 -2.9 5,306,203 - Psyr_4439 0.67 +1.1 5,306,203 - Psyr_4439 0.67 -2.7 5,306,203 - Psyr_4439 0.67 +0.2 5,306,203 - Psyr_4439 0.67 -1.6 5,306,203 - Psyr_4439 0.67 +1.2 5,306,203 - Psyr_4439 0.67 +0.9 5,306,203 - Psyr_4439 0.67 +1.3 5,306,203 - Psyr_4439 0.67 +1.8 5,306,304 + Psyr_4439 0.76 +2.8 5,306,341 - Psyr_4439 0.79 -0.4 5,306,594 + +4.5 5,306,761 - Psyr_4440 0.12 +2.5 5,306,988 + Psyr_4440 0.36 -1.9 5,306,989 - Psyr_4440 0.36 -0.5 5,307,046 + Psyr_4440 0.42 +0.5 5,307,100 + Psyr_4440 0.48 -4.1 5,307,400 - Psyr_4440 0.80 -3.0 5,307,400 - Psyr_4440 0.80 -2.3 5,307,429 - Psyr_4440 0.83 +2.2 5,307,435 + Psyr_4440 0.83 -0.4 5,307,435 + Psyr_4440 0.83 -2.6 5,307,435 + Psyr_4440 0.83 +0.2 5,307,435 + Psyr_4440 0.83 -1.2 5,307,436 - Psyr_4440 0.83 +2.2 5,307,436 - Psyr_4440 0.83 +0.2 5,307,498 + -4.8 5,307,498 + -1.6 5,307,498 + +1.8 5,307,499 - -2.2 5,307,499 - +2.8 5,307,499 - +2.8 5,307,499 - -1.2 5,307,566 + +1.8 5,307,566 + +1.2 5,307,566 + -1.2 5,307,566 + -5.6 5,307,566 + -0.2 5,307,566 + -0.8 5,307,566 + -2.2 5,307,566 + -3.2 5,307,566 + +2.5 5,307,566 + +0.2 5,307,567 - +3.0 5,307,567 - -3.2 5,307,573 + -1.5 5,307,573 + -3.8 5,307,573 + -0.0 5,307,573 + -0.8 5,307,574 - +3.2 5,307,574 - -2.0 5,307,574 - -2.0 5,307,576 + +1.2 5,307,576 + -3.9 5,307,577 - -2.8 5,307,577 - -1.6 5,307,594 + +1.2 5,307,595 - +1.8 5,307,631 + -1.9 5,307,632 - -1.3 5,307,680 - -1.7 5,307,683 + -2.3 5,307,684 - -0.0 5,307,696 + -2.0 5,307,696 + -1.4 5,307,698 + -1.3 5,307,699 - -1.3 5,307,704 + -1.9 5,307,704 + -1.2 5,307,705 - -0.7 5,307,733 + -0.0 5,307,746 + +3.5 5,307,746 + +0.8 5,307,746 + +3.8 5,307,746 + +0.2 5,307,746 + +1.8 5,307,746 + -2.7 5,307,746 + +1.6 5,307,746 + -0.1 5,307,746 + +3.5 5,307,746 + -0.3 5,307,746 + +0.2 5,307,746 + -1.6 5,307,746 + +2.8 5,307,746 + +1.2 5,307,746 + -0.7 5,307,747 - -0.2 5,307,747 - -0.7 5,307,747 - +3.8 5,307,747 - -0.5 5,307,747 - -0.4 5,307,747 - -1.2 5,307,747 - +3.2 5,307,747 - +2.8 5,307,779 + +1.8 5,307,780 - +1.4 5,307,825 + +0.5 5,307,825 + +3.6 5,307,826 - +0.7 5,307,835 + +1.2 5,307,836 - +0.5 5,307,836 - -0.1 5,307,836 - -2.2 5,307,836 - +4.0 5,307,836 - +3.8 5,307,839 + +5.1 5,307,839 + +0.5 5,307,839 + -1.6 5,307,839 + -0.5 5,307,839 + -0.7 5,307,839 + +3.0 5,307,839 + +3.8 5,307,839 + +0.2 5,307,840 - -0.5 5,307,840 - +3.0 5,307,840 - -0.8 5,307,840 - +3.2 5,307,840 - -0.1 5,307,840 - +2.2 5,307,840 - -4.5 5,307,840 - +2.2 5,307,840 - -2.0 5,307,840 - +0.2 5,307,841 + -0.5 5,307,842 - +2.2 5,307,842 - +0.1 5,307,842 - +4.1 5,307,881 + +2.5 5,307,881 + -2.7 5,307,881 + +2.2 5,307,881 + +0.2 5,307,912 + -1.5 5,307,912 + +4.4 5,307,912 + -2.2 5,307,913 - -1.8 5,307,913 - -2.0 5,307,913 - +3.2 5,307,913 - +2.5 5,308,037 - +2.5 5,308,086 - Psyr_4441 0.13 +2.8 5,308,086 - Psyr_4441 0.13 +2.8 5,308,121 + Psyr_4441 0.16 -1.5 5,308,122 - Psyr_4441 0.16 +3.2 5,308,122 - Psyr_4441 0.16 +0.9 5,308,122 - Psyr_4441 0.16 +4.2
Or see this region's nucleotide sequence