Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4372

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4371 and Psyr_4372 are separated by 137 nucleotidesPsyr_4372 and Psyr_4373 overlap by 4 nucleotides Psyr_4371: Psyr_4371 - DedA:Phosphoesterase, PA-phosphatase related protein, at 5,224,311 to 5,225,627 _4371 Psyr_4372: Psyr_4372 - aspartate carbamoyltransferase, at 5,225,765 to 5,227,801 _4372 Psyr_4373: Psyr_4373 - PAS, at 5,227,798 to 5,230,521 _4373 Position (kb) 5225 5226 5227 5228Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 5224.782 kb on + strand, within Psyr_4371at 5224.907 kb on + strand, within Psyr_4371at 5224.908 kb on - strand, within Psyr_4371at 5224.908 kb on - strand, within Psyr_4371at 5224.923 kb on + strand, within Psyr_4371at 5225.119 kb on + strand, within Psyr_4371at 5225.119 kb on + strand, within Psyr_4371at 5225.248 kb on + strand, within Psyr_4371at 5225.248 kb on + strand, within Psyr_4371at 5225.265 kb on + strand, within Psyr_4371at 5225.265 kb on + strand, within Psyr_4371at 5225.266 kb on - strand, within Psyr_4371at 5225.266 kb on - strand, within Psyr_4371at 5225.266 kb on - strand, within Psyr_4371at 5225.266 kb on - strand, within Psyr_4371at 5225.266 kb on - strand, within Psyr_4371at 5225.266 kb on - strand, within Psyr_4371at 5225.266 kb on - strand, within Psyr_4371at 5225.285 kb on + strand, within Psyr_4371at 5225.415 kb on + strand, within Psyr_4371at 5225.622 kb on + strandat 5225.622 kb on + strandat 5225.713 kb on + strandat 5225.714 kb on - strandat 5225.714 kb on - strandat 5225.714 kb on - strandat 5225.783 kb on + strandat 5225.783 kb on + strandat 5225.785 kb on + strandat 5225.785 kb on + strandat 5225.891 kb on + strandat 5226.099 kb on + strand, within Psyr_4372at 5226.099 kb on + strand, within Psyr_4372at 5226.099 kb on + strand, within Psyr_4372at 5226.099 kb on + strand, within Psyr_4372at 5226.100 kb on - strand, within Psyr_4372at 5226.417 kb on - strand, within Psyr_4372at 5226.471 kb on + strand, within Psyr_4372at 5226.471 kb on + strand, within Psyr_4372at 5226.471 kb on + strand, within Psyr_4372at 5226.471 kb on + strand, within Psyr_4372at 5226.471 kb on + strand, within Psyr_4372at 5226.471 kb on + strand, within Psyr_4372at 5226.472 kb on - strand, within Psyr_4372at 5226.472 kb on - strand, within Psyr_4372at 5226.472 kb on - strand, within Psyr_4372at 5226.472 kb on - strand, within Psyr_4372at 5226.472 kb on - strand, within Psyr_4372at 5226.621 kb on + strand, within Psyr_4372at 5226.621 kb on + strand, within Psyr_4372at 5226.621 kb on + strand, within Psyr_4372at 5226.621 kb on + strand, within Psyr_4372at 5226.621 kb on + strand, within Psyr_4372at 5226.621 kb on + strand, within Psyr_4372at 5226.621 kb on + strand, within Psyr_4372at 5226.621 kb on + strand, within Psyr_4372at 5226.621 kb on + strand, within Psyr_4372at 5226.621 kb on + strand, within Psyr_4372at 5226.621 kb on + strand, within Psyr_4372at 5226.622 kb on - strand, within Psyr_4372at 5226.622 kb on - strand, within Psyr_4372at 5226.622 kb on - strand, within Psyr_4372at 5226.622 kb on - strand, within Psyr_4372at 5226.622 kb on - strand, within Psyr_4372at 5226.622 kb on - strand, within Psyr_4372at 5226.622 kb on - strand, within Psyr_4372at 5226.622 kb on - strand, within Psyr_4372at 5226.622 kb on - strand, within Psyr_4372at 5226.622 kb on - strand, within Psyr_4372at 5226.622 kb on - strand, within Psyr_4372at 5226.622 kb on - strand, within Psyr_4372at 5226.622 kb on - strand, within Psyr_4372at 5226.661 kb on + strand, within Psyr_4372at 5226.661 kb on + strand, within Psyr_4372at 5226.661 kb on + strand, within Psyr_4372at 5226.869 kb on + strand, within Psyr_4372at 5226.947 kb on - strand, within Psyr_4372at 5227.151 kb on + strand, within Psyr_4372at 5227.151 kb on + strand, within Psyr_4372at 5227.152 kb on - strand, within Psyr_4372at 5227.152 kb on - strand, within Psyr_4372at 5227.152 kb on - strand, within Psyr_4372at 5227.165 kb on + strand, within Psyr_4372at 5227.166 kb on - strand, within Psyr_4372at 5227.166 kb on - strand, within Psyr_4372at 5227.166 kb on - strand, within Psyr_4372at 5227.166 kb on - strand, within Psyr_4372at 5227.171 kb on + strand, within Psyr_4372at 5227.502 kb on + strand, within Psyr_4372at 5227.577 kb on + strand, within Psyr_4372at 5227.577 kb on + strand, within Psyr_4372at 5227.577 kb on + strand, within Psyr_4372at 5227.577 kb on + strand, within Psyr_4372at 5227.577 kb on + strand, within Psyr_4372at 5227.578 kb on - strand, within Psyr_4372at 5227.578 kb on - strand, within Psyr_4372at 5227.579 kb on + strand, within Psyr_4372at 5227.579 kb on + strand, within Psyr_4372at 5227.580 kb on - strand, within Psyr_4372at 5227.799 kb on + strandat 5227.799 kb on + strandat 5227.799 kb on + strandat 5227.799 kb on + strandat 5227.800 kb on - strandat 5227.800 kb on - strandat 5227.800 kb on - strandat 5227.800 kb on - strandat 5227.907 kb on + strandat 5227.908 kb on - strandat 5227.942 kb on + strandat 5227.950 kb on + strandat 5228.034 kb on + strandat 5228.035 kb on - strandat 5228.035 kb on - strandat 5228.035 kb on - strandat 5228.035 kb on - strandat 5228.035 kb on - strandat 5228.290 kb on + strand, within Psyr_4373at 5228.290 kb on + strand, within Psyr_4373at 5228.291 kb on - strand, within Psyr_4373at 5228.291 kb on - strand, within Psyr_4373at 5228.291 kb on - strand, within Psyr_4373at 5228.320 kb on - strand, within Psyr_4373at 5228.320 kb on - strand, within Psyr_4373at 5228.385 kb on - strand, within Psyr_4373at 5228.385 kb on - strand, within Psyr_4373at 5228.545 kb on + strand, within Psyr_4373at 5228.545 kb on + strand, within Psyr_4373at 5228.545 kb on + strand, within Psyr_4373at 5228.546 kb on - strand, within Psyr_4373at 5228.546 kb on - strand, within Psyr_4373at 5228.546 kb on - strand, within Psyr_4373at 5228.636 kb on + strand, within Psyr_4373at 5228.636 kb on + strand, within Psyr_4373at 5228.636 kb on + strand, within Psyr_4373at 5228.637 kb on - strand, within Psyr_4373at 5228.637 kb on - strand, within Psyr_4373at 5228.637 kb on - strand, within Psyr_4373at 5228.707 kb on - strand, within Psyr_4373at 5228.790 kb on + strand, within Psyr_4373at 5228.790 kb on + strand, within Psyr_4373at 5228.790 kb on + strand, within Psyr_4373at 5228.790 kb on + strand, within Psyr_4373at 5228.791 kb on - strand, within Psyr_4373at 5228.791 kb on - strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.792 kb on + strand, within Psyr_4373at 5228.793 kb on - strand, within Psyr_4373at 5228.793 kb on - strand, within Psyr_4373at 5228.793 kb on - strand, within Psyr_4373at 5228.793 kb on - strand, within Psyr_4373at 5228.793 kb on - strand, within Psyr_4373at 5228.793 kb on - strand, within Psyr_4373at 5228.793 kb on - strand, within Psyr_4373at 5228.793 kb on - strand, within Psyr_4373at 5228.793 kb on - strand, within Psyr_4373at 5228.793 kb on - strand, within Psyr_4373at 5228.793 kb on - strand, within Psyr_4373at 5228.793 kb on - strand, within Psyr_4373at 5228.793 kb on - strand, within Psyr_4373

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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5,224,782 + Psyr_4371 0.36 +0.1
5,224,907 + Psyr_4371 0.45 +2.5
5,224,908 - Psyr_4371 0.45 +1.1
5,224,908 - Psyr_4371 0.45 +1.0
5,224,923 + Psyr_4371 0.46 -1.4
5,225,119 + Psyr_4371 0.61 -1.7
5,225,119 + Psyr_4371 0.61 +3.7
5,225,248 + Psyr_4371 0.71 +1.6
5,225,248 + Psyr_4371 0.71 +1.1
5,225,265 + Psyr_4371 0.72 +4.1
5,225,265 + Psyr_4371 0.72 +2.1
5,225,266 - Psyr_4371 0.73 +3.7
5,225,266 - Psyr_4371 0.73 +0.4
5,225,266 - Psyr_4371 0.73 +0.8
5,225,266 - Psyr_4371 0.73 +0.1
5,225,266 - Psyr_4371 0.73 +3.5
5,225,266 - Psyr_4371 0.73 +0.1
5,225,266 - Psyr_4371 0.73 -2.5
5,225,285 + Psyr_4371 0.74 +3.1
5,225,415 + Psyr_4371 0.84 +1.7
5,225,622 + -1.7
5,225,622 + +4.8
5,225,713 + +0.4
5,225,714 - -0.6
5,225,714 - -0.1
5,225,714 - +3.5
5,225,783 + +4.0
5,225,783 + +1.1
5,225,785 + -2.1
5,225,785 + +0.1
5,225,891 + -4.2
5,226,099 + Psyr_4372 0.16 +3.6
5,226,099 + Psyr_4372 0.16 -1.7
5,226,099 + Psyr_4372 0.16 -0.9
5,226,099 + Psyr_4372 0.16 -0.1
5,226,100 - Psyr_4372 0.16 -0.4
5,226,417 - Psyr_4372 0.32 +4.4
5,226,471 + Psyr_4372 0.35 -3.1
5,226,471 + Psyr_4372 0.35 +1.1
5,226,471 + Psyr_4372 0.35 +1.1
5,226,471 + Psyr_4372 0.35 +4.9
5,226,471 + Psyr_4372 0.35 +1.1
5,226,471 + Psyr_4372 0.35 +0.1
5,226,472 - Psyr_4372 0.35 +0.1
5,226,472 - Psyr_4372 0.35 +1.1
5,226,472 - Psyr_4372 0.35 -0.6
5,226,472 - Psyr_4372 0.35 -0.3
5,226,472 - Psyr_4372 0.35 +2.5
5,226,621 + Psyr_4372 0.42 -2.0
5,226,621 + Psyr_4372 0.42 -1.6
5,226,621 + Psyr_4372 0.42 -1.8
5,226,621 + Psyr_4372 0.42 +0.6
5,226,621 + Psyr_4372 0.42 -1.4
5,226,621 + Psyr_4372 0.42 -1.4
5,226,621 + Psyr_4372 0.42 -1.1
5,226,621 + Psyr_4372 0.42 -2.6
5,226,621 + Psyr_4372 0.42 -0.5
5,226,621 + Psyr_4372 0.42 +1.7
5,226,621 + Psyr_4372 0.42 -1.2
5,226,622 - Psyr_4372 0.42 -2.1
5,226,622 - Psyr_4372 0.42 +2.7
5,226,622 - Psyr_4372 0.42 +2.7
5,226,622 - Psyr_4372 0.42 -1.0
5,226,622 - Psyr_4372 0.42 -0.4
5,226,622 - Psyr_4372 0.42 -1.3
5,226,622 - Psyr_4372 0.42 -1.2
5,226,622 - Psyr_4372 0.42 -1.0
5,226,622 - Psyr_4372 0.42 +4.5
5,226,622 - Psyr_4372 0.42 +1.7
5,226,622 - Psyr_4372 0.42 -0.3
5,226,622 - Psyr_4372 0.42 -2.9
5,226,622 - Psyr_4372 0.42 +1.1
5,226,661 + Psyr_4372 0.44 -0.9
5,226,661 + Psyr_4372 0.44 -1.3
5,226,661 + Psyr_4372 0.44 -3.1
5,226,869 + Psyr_4372 0.54 +2.7
5,226,947 - Psyr_4372 0.58 -0.1
5,227,151 + Psyr_4372 0.68 +2.5
5,227,151 + Psyr_4372 0.68 +0.6
5,227,152 - Psyr_4372 0.68 +2.1
5,227,152 - Psyr_4372 0.68 -1.2
5,227,152 - Psyr_4372 0.68 -0.6
5,227,165 + Psyr_4372 0.69 +2.7
5,227,166 - Psyr_4372 0.69 +2.5
5,227,166 - Psyr_4372 0.69 +0.0
5,227,166 - Psyr_4372 0.69 +2.5
5,227,166 - Psyr_4372 0.69 -2.9
5,227,171 + Psyr_4372 0.69 -0.9
5,227,502 + Psyr_4372 0.85 -3.8
5,227,577 + Psyr_4372 0.89 +0.1
5,227,577 + Psyr_4372 0.89 -0.6
5,227,577 + Psyr_4372 0.89 -2.2
5,227,577 + Psyr_4372 0.89 -0.3
5,227,577 + Psyr_4372 0.89 -1.8
5,227,578 - Psyr_4372 0.89 +3.8
5,227,578 - Psyr_4372 0.89 -2.5
5,227,579 + Psyr_4372 0.89 +0.1
5,227,579 + Psyr_4372 0.89 +2.1
5,227,580 - Psyr_4372 0.89 +1.1
5,227,799 + +0.3
5,227,799 + +1.7
5,227,799 + +0.4
5,227,799 + +3.0
5,227,800 - -2.7
5,227,800 - -3.4
5,227,800 - -1.6
5,227,800 - +1.0
5,227,907 + -1.3
5,227,908 - +3.8
5,227,942 + -2.0
5,227,950 + -1.9
5,228,034 + -0.3
5,228,035 - +3.0
5,228,035 - -1.2
5,228,035 - +0.6
5,228,035 - -1.3
5,228,035 - +0.6
5,228,290 + Psyr_4373 0.18 +3.7
5,228,290 + Psyr_4373 0.18 +3.3
5,228,291 - Psyr_4373 0.18 +3.0
5,228,291 - Psyr_4373 0.18 +1.4
5,228,291 - Psyr_4373 0.18 +0.0
5,228,320 - Psyr_4373 0.19 -0.8
5,228,320 - Psyr_4373 0.19 -2.2
5,228,385 - Psyr_4373 0.22 +0.1
5,228,385 - Psyr_4373 0.22 -0.1
5,228,545 + Psyr_4373 0.27 -1.6
5,228,545 + Psyr_4373 0.27 +1.1
5,228,545 + Psyr_4373 0.27 -0.1
5,228,546 - Psyr_4373 0.27 +3.2
5,228,546 - Psyr_4373 0.27 -1.1
5,228,546 - Psyr_4373 0.27 -1.9
5,228,636 + Psyr_4373 0.31 +5.1
5,228,636 + Psyr_4373 0.31 +1.1
5,228,636 + Psyr_4373 0.31 -0.1
5,228,637 - Psyr_4373 0.31 +3.1
5,228,637 - Psyr_4373 0.31 +0.1
5,228,637 - Psyr_4373 0.31 -1.2
5,228,707 - Psyr_4373 0.33 +1.1
5,228,790 + Psyr_4373 0.36 +2.7
5,228,790 + Psyr_4373 0.36 +2.1
5,228,790 + Psyr_4373 0.36 -0.6
5,228,790 + Psyr_4373 0.36 -2.0
5,228,791 - Psyr_4373 0.36 +3.1
5,228,791 - Psyr_4373 0.36 +3.3
5,228,792 + Psyr_4373 0.36 +3.6
5,228,792 + Psyr_4373 0.36 +0.4
5,228,792 + Psyr_4373 0.36 +0.1
5,228,792 + Psyr_4373 0.36 +2.1
5,228,792 + Psyr_4373 0.36 -1.0
5,228,792 + Psyr_4373 0.36 +0.1
5,228,792 + Psyr_4373 0.36 +3.3
5,228,792 + Psyr_4373 0.36 -0.9
5,228,792 + Psyr_4373 0.36 -1.7
5,228,792 + Psyr_4373 0.36 +2.5
5,228,792 + Psyr_4373 0.36 -0.2
5,228,792 + Psyr_4373 0.36 -2.3
5,228,792 + Psyr_4373 0.36 +3.3
5,228,792 + Psyr_4373 0.36 -1.1
5,228,792 + Psyr_4373 0.36 -0.7
5,228,792 + Psyr_4373 0.36 +0.6
5,228,792 + Psyr_4373 0.36 +0.6
5,228,792 + Psyr_4373 0.36 +4.0
5,228,792 + Psyr_4373 0.36 -1.9
5,228,792 + Psyr_4373 0.36 +1.1
5,228,792 + Psyr_4373 0.36 -1.3
5,228,792 + Psyr_4373 0.36 -0.9
5,228,792 + Psyr_4373 0.36 +3.1
5,228,792 + Psyr_4373 0.36 +1.3
5,228,792 + Psyr_4373 0.36 +0.6
5,228,792 + Psyr_4373 0.36 +3.6
5,228,792 + Psyr_4373 0.36 +1.0
5,228,792 + Psyr_4373 0.36 -0.2
5,228,792 + Psyr_4373 0.36 -1.0
5,228,792 + Psyr_4373 0.36 -2.4
5,228,792 + Psyr_4373 0.36 -1.6
5,228,792 + Psyr_4373 0.36 +0.8
5,228,792 + Psyr_4373 0.36 -1.0
5,228,792 + Psyr_4373 0.36 +1.5
5,228,792 + Psyr_4373 0.36 +1.5
5,228,792 + Psyr_4373 0.36 +4.9
5,228,792 + Psyr_4373 0.36 +3.5
5,228,792 + Psyr_4373 0.36 +3.1
5,228,792 + Psyr_4373 0.36 -2.4
5,228,792 + Psyr_4373 0.36 -2.3
5,228,792 + Psyr_4373 0.36 -1.1
5,228,792 + Psyr_4373 0.36 +4.5
5,228,792 + Psyr_4373 0.36 -1.2
5,228,793 - Psyr_4373 0.37 -0.1
5,228,793 - Psyr_4373 0.37 -0.3
5,228,793 - Psyr_4373 0.37 +1.2
5,228,793 - Psyr_4373 0.37 -0.6
5,228,793 - Psyr_4373 0.37 +3.0
5,228,793 - Psyr_4373 0.37 +3.6
5,228,793 - Psyr_4373 0.37 +2.5
5,228,793 - Psyr_4373 0.37 +1.1
5,228,793 - Psyr_4373 0.37 +3.3
5,228,793 - Psyr_4373 0.37 +4.7
5,228,793 - Psyr_4373 0.37 -0.9
5,228,793 - Psyr_4373 0.37 -1.0
5,228,793 - Psyr_4373 0.37 +0.4

Or see this region's nucleotide sequence