Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4296

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4295 and Psyr_4296 are separated by 70 nucleotidesPsyr_4296 and Psyr_4297 are separated by 248 nucleotides Psyr_4295: Psyr_4295 - Histone deacetylase superfamily, at 5,121,325 to 5,122,242 _4295 Psyr_4296: Psyr_4296 - HI0933-like protein, at 5,122,313 to 5,123,587 _4296 Psyr_4297: Psyr_4297 - Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, at 5,123,836 to 5,125,164 _4297 Position (kb) 5122 5123 5124Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 5121.340 kb on - strandat 5121.343 kb on + strandat 5121.343 kb on + strandat 5121.343 kb on + strandat 5121.343 kb on + strandat 5121.343 kb on + strandat 5121.343 kb on + strandat 5121.343 kb on + strandat 5121.343 kb on + strandat 5121.343 kb on + strandat 5121.343 kb on + strandat 5121.343 kb on + strandat 5121.344 kb on - strandat 5121.344 kb on - strandat 5121.344 kb on - strandat 5121.344 kb on - strandat 5121.344 kb on - strandat 5121.344 kb on - strandat 5121.355 kb on + strandat 5121.355 kb on + strandat 5121.355 kb on + strandat 5121.356 kb on - strandat 5121.418 kb on + strand, within Psyr_4295at 5121.418 kb on + strand, within Psyr_4295at 5121.418 kb on + strand, within Psyr_4295at 5121.419 kb on - strand, within Psyr_4295at 5121.419 kb on - strand, within Psyr_4295at 5121.455 kb on + strand, within Psyr_4295at 5121.455 kb on + strand, within Psyr_4295at 5121.456 kb on - strand, within Psyr_4295at 5121.456 kb on - strand, within Psyr_4295at 5121.511 kb on + strand, within Psyr_4295at 5121.511 kb on + strand, within Psyr_4295at 5121.511 kb on + strand, within Psyr_4295at 5121.511 kb on + strand, within Psyr_4295at 5121.511 kb on + strand, within Psyr_4295at 5121.511 kb on + strand, within Psyr_4295at 5121.512 kb on - strand, within Psyr_4295at 5121.512 kb on - strand, within Psyr_4295at 5121.512 kb on - strand, within Psyr_4295at 5121.512 kb on - strand, within Psyr_4295at 5121.512 kb on - strand, within Psyr_4295at 5121.528 kb on + strand, within Psyr_4295at 5121.694 kb on + strand, within Psyr_4295at 5121.694 kb on + strand, within Psyr_4295at 5121.694 kb on + strand, within Psyr_4295at 5121.694 kb on + strand, within Psyr_4295at 5121.695 kb on - strand, within Psyr_4295at 5121.695 kb on - strand, within Psyr_4295at 5121.695 kb on - strand, within Psyr_4295at 5121.695 kb on - strand, within Psyr_4295at 5121.748 kb on + strand, within Psyr_4295at 5121.748 kb on + strand, within Psyr_4295at 5121.749 kb on - strand, within Psyr_4295at 5121.947 kb on - strand, within Psyr_4295at 5121.976 kb on + strand, within Psyr_4295at 5121.976 kb on + strand, within Psyr_4295at 5121.977 kb on - strand, within Psyr_4295at 5121.977 kb on - strand, within Psyr_4295at 5121.977 kb on - strand, within Psyr_4295at 5121.977 kb on - strand, within Psyr_4295at 5121.977 kb on - strand, within Psyr_4295at 5121.977 kb on - strand, within Psyr_4295at 5121.991 kb on + strand, within Psyr_4295at 5121.991 kb on + strand, within Psyr_4295at 5121.991 kb on + strand, within Psyr_4295at 5121.992 kb on - strand, within Psyr_4295at 5121.993 kb on + strand, within Psyr_4295at 5121.994 kb on - strand, within Psyr_4295at 5121.994 kb on - strand, within Psyr_4295at 5121.994 kb on - strand, within Psyr_4295at 5122.012 kb on + strand, within Psyr_4295at 5122.013 kb on - strandat 5122.013 kb on - strand, within Psyr_4295at 5122.013 kb on - strand, within Psyr_4295at 5122.013 kb on - strand, within Psyr_4295at 5122.055 kb on - strand, within Psyr_4295at 5122.309 kb on + strandat 5122.309 kb on + strandat 5122.310 kb on - strandat 5122.336 kb on + strandat 5122.337 kb on - strandat 5122.337 kb on - strandat 5122.460 kb on + strand, within Psyr_4296at 5122.461 kb on - strand, within Psyr_4296at 5122.560 kb on - strand, within Psyr_4296at 5123.102 kb on + strand, within Psyr_4296at 5123.102 kb on + strand, within Psyr_4296at 5123.102 kb on + strand, within Psyr_4296at 5123.102 kb on + strand, within Psyr_4296at 5123.102 kb on + strand, within Psyr_4296at 5123.102 kb on + strand, within Psyr_4296at 5123.102 kb on + strand, within Psyr_4296at 5123.102 kb on + strand, within Psyr_4296at 5123.102 kb on + strand, within Psyr_4296at 5123.102 kb on + strand, within Psyr_4296at 5123.103 kb on - strand, within Psyr_4296at 5123.103 kb on - strand, within Psyr_4296at 5123.103 kb on - strand, within Psyr_4296at 5123.103 kb on - strand, within Psyr_4296at 5123.252 kb on - strand, within Psyr_4296at 5123.370 kb on + strand, within Psyr_4296at 5123.371 kb on - strand, within Psyr_4296at 5123.371 kb on - strand, within Psyr_4296at 5123.466 kb on + strandat 5123.513 kb on + strandat 5123.620 kb on + strandat 5123.621 kb on - strandat 5123.621 kb on - strandat 5123.622 kb on + strandat 5123.622 kb on + strandat 5123.623 kb on - strandat 5123.623 kb on - strandat 5123.624 kb on + strandat 5123.624 kb on + strandat 5123.624 kb on + strandat 5123.624 kb on + strandat 5123.625 kb on - strandat 5123.625 kb on - strandat 5123.625 kb on - strandat 5123.625 kb on - strandat 5123.625 kb on - strandat 5123.625 kb on - strandat 5123.625 kb on - strandat 5123.625 kb on - strandat 5123.625 kb on - strandat 5123.625 kb on - strandat 5123.625 kb on - strandat 5123.625 kb on - strandat 5123.657 kb on + strandat 5123.658 kb on - strandat 5123.793 kb on + strandat 5123.793 kb on + strandat 5123.793 kb on + strandat 5123.794 kb on - strandat 5123.794 kb on - strandat 5123.794 kb on - strandat 5123.794 kb on - strandat 5123.794 kb on - strandat 5123.795 kb on + strandat 5123.795 kb on + strandat 5123.876 kb on - strandat 5123.876 kb on - strandat 5123.880 kb on + strandat 5123.881 kb on - strandat 5123.881 kb on - strandat 5123.881 kb on - strandat 5124.182 kb on + strand, within Psyr_4297at 5124.182 kb on + strand, within Psyr_4297at 5124.182 kb on + strand, within Psyr_4297at 5124.182 kb on + strand, within Psyr_4297at 5124.182 kb on + strand, within Psyr_4297at 5124.182 kb on + strand, within Psyr_4297at 5124.183 kb on - strand, within Psyr_4297at 5124.183 kb on - strand, within Psyr_4297at 5124.183 kb on - strand, within Psyr_4297at 5124.183 kb on - strand, within Psyr_4297at 5124.183 kb on - strand, within Psyr_4297at 5124.183 kb on - strand, within Psyr_4297at 5124.183 kb on - strand, within Psyr_4297at 5124.183 kb on - strand, within Psyr_4297at 5124.183 kb on - strand, within Psyr_4297

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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5,121,340 - +3.6
5,121,343 + -1.2
5,121,343 + +3.6
5,121,343 + -4.0
5,121,343 + +0.1
5,121,343 + -2.0
5,121,343 + -0.9
5,121,343 + -0.4
5,121,343 + +1.1
5,121,343 + +0.5
5,121,343 + +2.5
5,121,343 + -1.6
5,121,344 - -1.4
5,121,344 - -1.6
5,121,344 - +2.5
5,121,344 - -0.5
5,121,344 - +2.5
5,121,344 - +1.5
5,121,355 + +2.5
5,121,355 + -0.6
5,121,355 + -1.0
5,121,356 - +1.9
5,121,418 + Psyr_4295 0.10 -2.9
5,121,418 + Psyr_4295 0.10 +4.5
5,121,418 + Psyr_4295 0.10 +4.5
5,121,419 - Psyr_4295 0.10 +3.8
5,121,419 - Psyr_4295 0.10 +3.6
5,121,455 + Psyr_4295 0.14 -0.6
5,121,455 + Psyr_4295 0.14 +2.7
5,121,456 - Psyr_4295 0.14 +0.1
5,121,456 - Psyr_4295 0.14 -2.1
5,121,511 + Psyr_4295 0.20 -1.4
5,121,511 + Psyr_4295 0.20 +5.2
5,121,511 + Psyr_4295 0.20 +3.6
5,121,511 + Psyr_4295 0.20 +2.1
5,121,511 + Psyr_4295 0.20 -0.7
5,121,511 + Psyr_4295 0.20 +0.6
5,121,512 - Psyr_4295 0.20 -1.9
5,121,512 - Psyr_4295 0.20 +0.9
5,121,512 - Psyr_4295 0.20 -1.4
5,121,512 - Psyr_4295 0.20 -2.8
5,121,512 - Psyr_4295 0.20 +4.4
5,121,528 + Psyr_4295 0.22 -1.0
5,121,694 + Psyr_4295 0.40 +2.1
5,121,694 + Psyr_4295 0.40 +2.9
5,121,694 + Psyr_4295 0.40 -0.1
5,121,694 + Psyr_4295 0.40 -1.3
5,121,695 - Psyr_4295 0.40 -1.8
5,121,695 - Psyr_4295 0.40 +0.1
5,121,695 - Psyr_4295 0.40 +3.3
5,121,695 - Psyr_4295 0.40 +3.7
5,121,748 + Psyr_4295 0.46 +0.1
5,121,748 + Psyr_4295 0.46 -0.4
5,121,749 - Psyr_4295 0.46 +0.1
5,121,947 - Psyr_4295 0.68 -1.9
5,121,976 + Psyr_4295 0.71 +0.1
5,121,976 + Psyr_4295 0.71 -0.9
5,121,977 - Psyr_4295 0.71 -0.5
5,121,977 - Psyr_4295 0.71 +3.7
5,121,977 - Psyr_4295 0.71 -1.7
5,121,977 - Psyr_4295 0.71 +2.5
5,121,977 - Psyr_4295 0.71 -2.7
5,121,977 - Psyr_4295 0.71 +0.1
5,121,991 + Psyr_4295 0.73 -1.0
5,121,991 + Psyr_4295 0.73 +3.9
5,121,991 + Psyr_4295 0.73 +1.1
5,121,992 - Psyr_4295 0.73 +3.6
5,121,993 + Psyr_4295 0.73 +2.5
5,121,994 - Psyr_4295 0.73 -0.5
5,121,994 - Psyr_4295 0.73 +2.9
5,121,994 - Psyr_4295 0.73 +1.9
5,122,012 + Psyr_4295 0.75 -0.4
5,122,013 - +2.1
5,122,013 - Psyr_4295 0.75 -2.6
5,122,013 - Psyr_4295 0.75 -0.6
5,122,013 - Psyr_4295 0.75 +0.4
5,122,055 - Psyr_4295 0.80 +4.9
5,122,309 + +3.3
5,122,309 + -0.3
5,122,310 - +1.0
5,122,336 + -1.5
5,122,337 - -1.4
5,122,337 - +3.8
5,122,460 + Psyr_4296 0.12 -0.1
5,122,461 - Psyr_4296 0.12 -1.1
5,122,560 - Psyr_4296 0.19 -0.9
5,123,102 + Psyr_4296 0.62 +2.9
5,123,102 + Psyr_4296 0.62 +0.3
5,123,102 + Psyr_4296 0.62 +0.5
5,123,102 + Psyr_4296 0.62 +3.3
5,123,102 + Psyr_4296 0.62 +1.7
5,123,102 + Psyr_4296 0.62 -0.9
5,123,102 + Psyr_4296 0.62 +2.9
5,123,102 + Psyr_4296 0.62 +0.4
5,123,102 + Psyr_4296 0.62 -1.6
5,123,102 + Psyr_4296 0.62 -0.1
5,123,103 - Psyr_4296 0.62 -1.4
5,123,103 - Psyr_4296 0.62 +2.7
5,123,103 - Psyr_4296 0.62 +0.1
5,123,103 - Psyr_4296 0.62 +0.1
5,123,252 - Psyr_4296 0.74 -3.0
5,123,370 + Psyr_4296 0.83 +1.1
5,123,371 - Psyr_4296 0.83 +2.1
5,123,371 - Psyr_4296 0.83 +0.1
5,123,466 + -1.2
5,123,513 + +2.9
5,123,620 + +3.5
5,123,621 - -0.9
5,123,621 - -0.5
5,123,622 + +2.9
5,123,622 + +0.7
5,123,623 - -1.0
5,123,623 - -2.0
5,123,624 + -0.2
5,123,624 + -1.0
5,123,624 + -1.8
5,123,624 + -1.2
5,123,625 - +0.6
5,123,625 - +4.0
5,123,625 - -3.3
5,123,625 - -0.1
5,123,625 - +3.1
5,123,625 - -0.6
5,123,625 - +2.5
5,123,625 - +4.5
5,123,625 - -0.4
5,123,625 - +0.6
5,123,625 - -0.5
5,123,625 - -1.1
5,123,657 + -0.4
5,123,658 - +3.1
5,123,793 + +3.6
5,123,793 + -0.0
5,123,793 + +0.9
5,123,794 - -1.4
5,123,794 - -0.5
5,123,794 - -0.3
5,123,794 - -0.1
5,123,794 - +1.2
5,123,795 + -1.8
5,123,795 + -1.4
5,123,876 - +3.6
5,123,876 - -0.8
5,123,880 + +0.7
5,123,881 - -1.9
5,123,881 - -1.6
5,123,881 - -0.4
5,124,182 + Psyr_4297 0.26 +4.7
5,124,182 + Psyr_4297 0.26 +1.7
5,124,182 + Psyr_4297 0.26 -1.2
5,124,182 + Psyr_4297 0.26 -1.9
5,124,182 + Psyr_4297 0.26 -2.3
5,124,182 + Psyr_4297 0.26 -0.6
5,124,183 - Psyr_4297 0.26 -2.9
5,124,183 - Psyr_4297 0.26 +0.1
5,124,183 - Psyr_4297 0.26 +0.4
5,124,183 - Psyr_4297 0.26 +1.2
5,124,183 - Psyr_4297 0.26 +0.1
5,124,183 - Psyr_4297 0.26 -1.1
5,124,183 - Psyr_4297 0.26 -2.9
5,124,183 - Psyr_4297 0.26 -0.0
5,124,183 - Psyr_4297 0.26 +0.2

Or see this region's nucleotide sequence