Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4286 and Psyr_4287 overlap by 4 nucleotides Psyr_4287 and Psyr_4288 are separated by 498 nucleotides
Psyr_4286: Psyr_4286 - Xanthine/uracil/vitamin C permease, at 5,111,500 to 5,112,795
_4286
Psyr_4287: Psyr_4287 - tRNA (uracil-5-)-methyltransferase, at 5,112,792 to 5,113,877
_4287
Psyr_4288: Psyr_4288 - protein of unknown function DUF894:Bacterial protein of unknown function DUF894, at 5,114,376 to 5,115,677
_4288
Position (kb) 5112
5113
5114 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 5111.795 kb on + strand, within Psyr_4286 at 5111.875 kb on - strand, within Psyr_4286 at 5111.875 kb on - strand, within Psyr_4286 at 5111.875 kb on - strand, within Psyr_4286 at 5111.955 kb on + strand, within Psyr_4286 at 5112.058 kb on + strand, within Psyr_4286 at 5112.058 kb on + strand, within Psyr_4286 at 5112.059 kb on - strand, within Psyr_4286 at 5112.357 kb on + strand, within Psyr_4286 at 5112.358 kb on - strand, within Psyr_4286 at 5112.358 kb on - strand, within Psyr_4286 at 5112.406 kb on + strand, within Psyr_4286 at 5112.406 kb on + strand, within Psyr_4286 at 5112.406 kb on + strand, within Psyr_4286 at 5112.407 kb on - strand, within Psyr_4286 at 5112.620 kb on + strand, within Psyr_4286 at 5112.621 kb on - strand, within Psyr_4286 at 5112.653 kb on - strand, within Psyr_4286 at 5112.653 kb on - strand, within Psyr_4286 at 5112.653 kb on - strand, within Psyr_4286 at 5112.653 kb on - strand, within Psyr_4286 at 5112.653 kb on - strand, within Psyr_4286 at 5112.820 kb on - strand at 5112.820 kb on - strand at 5112.918 kb on + strand, within Psyr_4287 at 5112.918 kb on + strand, within Psyr_4287 at 5112.918 kb on + strand, within Psyr_4287 at 5112.919 kb on - strand, within Psyr_4287 at 5112.919 kb on - strand, within Psyr_4287 at 5112.919 kb on - strand, within Psyr_4287 at 5112.920 kb on + strand, within Psyr_4287 at 5112.920 kb on + strand, within Psyr_4287 at 5112.920 kb on + strand, within Psyr_4287 at 5112.920 kb on + strand, within Psyr_4287 at 5112.920 kb on + strand, within Psyr_4287 at 5112.920 kb on + strand, within Psyr_4287 at 5112.921 kb on - strand, within Psyr_4287 at 5112.921 kb on - strand, within Psyr_4287 at 5112.921 kb on - strand, within Psyr_4287 at 5112.921 kb on - strand, within Psyr_4287 at 5112.970 kb on - strand, within Psyr_4287 at 5112.970 kb on - strand, within Psyr_4287 at 5113.041 kb on - strand, within Psyr_4287 at 5113.275 kb on + strand, within Psyr_4287 at 5113.275 kb on + strand, within Psyr_4287 at 5113.275 kb on + strand, within Psyr_4287 at 5113.275 kb on + strand, within Psyr_4287 at 5113.275 kb on + strand, within Psyr_4287 at 5113.275 kb on + strand, within Psyr_4287 at 5113.275 kb on + strand, within Psyr_4287 at 5113.275 kb on + strand, within Psyr_4287 at 5113.275 kb on + strand, within Psyr_4287 at 5113.275 kb on + strand, within Psyr_4287 at 5113.276 kb on - strand, within Psyr_4287 at 5113.276 kb on - strand, within Psyr_4287 at 5113.276 kb on - strand, within Psyr_4287 at 5113.276 kb on - strand, within Psyr_4287 at 5113.276 kb on - strand, within Psyr_4287 at 5113.276 kb on - strand, within Psyr_4287 at 5113.428 kb on + strand, within Psyr_4287 at 5113.463 kb on + strand, within Psyr_4287 at 5113.647 kb on + strand, within Psyr_4287 at 5113.647 kb on + strand, within Psyr_4287 at 5113.647 kb on + strand, within Psyr_4287 at 5113.647 kb on + strand, within Psyr_4287 at 5113.647 kb on + strand, within Psyr_4287 at 5113.737 kb on + strand, within Psyr_4287 at 5113.737 kb on + strand, within Psyr_4287 at 5113.737 kb on + strand, within Psyr_4287 at 5113.737 kb on + strand, within Psyr_4287 at 5113.737 kb on + strand, within Psyr_4287 at 5113.738 kb on - strand, within Psyr_4287 at 5113.738 kb on - strand, within Psyr_4287 at 5113.738 kb on - strand, within Psyr_4287 at 5113.738 kb on - strand, within Psyr_4287 at 5113.738 kb on - strand, within Psyr_4287 at 5113.738 kb on - strand, within Psyr_4287 at 5113.738 kb on - strand, within Psyr_4287 at 5113.738 kb on - strand, within Psyr_4287 at 5113.738 kb on - strand, within Psyr_4287 at 5113.741 kb on + strand, within Psyr_4287 at 5113.742 kb on - strand, within Psyr_4287 at 5113.742 kb on - strand, within Psyr_4287 at 5113.742 kb on - strand, within Psyr_4287 at 5113.742 kb on - strand, within Psyr_4287 at 5113.742 kb on - strand, within Psyr_4287 at 5113.833 kb on + strand at 5113.895 kb on - strand at 5113.895 kb on - strand at 5114.107 kb on - strand at 5114.174 kb on + strand at 5114.257 kb on + strand at 5114.257 kb on + strand at 5114.314 kb on + strand at 5114.314 kb on + strand at 5114.318 kb on + strand at 5114.319 kb on - strand at 5114.319 kb on - strand at 5114.319 kb on - strand at 5114.321 kb on + strand at 5114.321 kb on + strand at 5114.336 kb on - strand at 5114.347 kb on + strand at 5114.347 kb on + strand at 5114.348 kb on - strand at 5114.348 kb on - strand at 5114.420 kb on - strand at 5114.459 kb on + strand at 5114.460 kb on - strand at 5114.526 kb on + strand, within Psyr_4288 at 5114.526 kb on + strand, within Psyr_4288 at 5114.527 kb on - strand, within Psyr_4288 at 5114.527 kb on - strand, within Psyr_4288 at 5114.559 kb on + strand, within Psyr_4288 at 5114.559 kb on + strand, within Psyr_4288 at 5114.559 kb on + strand, within Psyr_4288 at 5114.560 kb on - strand, within Psyr_4288 at 5114.560 kb on - strand, within Psyr_4288 at 5114.560 kb on - strand, within Psyr_4288 at 5114.560 kb on - strand, within Psyr_4288 at 5114.560 kb on - strand, within Psyr_4288 at 5114.560 kb on - strand, within Psyr_4288 at 5114.629 kb on - strand, within Psyr_4288 at 5114.629 kb on - strand, within Psyr_4288 at 5114.751 kb on + strand, within Psyr_4288
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 5,111,795 + Psyr_4286 0.23 +1.7 5,111,875 - Psyr_4286 0.29 +2.9 5,111,875 - Psyr_4286 0.29 +0.1 5,111,875 - Psyr_4286 0.29 +0.6 5,111,955 + Psyr_4286 0.35 -2.9 5,112,058 + Psyr_4286 0.43 +2.1 5,112,058 + Psyr_4286 0.43 -0.6 5,112,059 - Psyr_4286 0.43 -0.9 5,112,357 + Psyr_4286 0.66 -0.7 5,112,358 - Psyr_4286 0.66 -2.1 5,112,358 - Psyr_4286 0.66 +0.9 5,112,406 + Psyr_4286 0.70 +0.0 5,112,406 + Psyr_4286 0.70 -1.9 5,112,406 + Psyr_4286 0.70 +1.3 5,112,407 - Psyr_4286 0.70 -2.0 5,112,620 + Psyr_4286 0.86 -1.1 5,112,621 - Psyr_4286 0.86 -1.3 5,112,653 - Psyr_4286 0.89 +3.8 5,112,653 - Psyr_4286 0.89 +3.3 5,112,653 - Psyr_4286 0.89 -0.2 5,112,653 - Psyr_4286 0.89 -0.7 5,112,653 - Psyr_4286 0.89 +0.1 5,112,820 - +2.9 5,112,820 - +3.6 5,112,918 + Psyr_4287 0.12 +2.6 5,112,918 + Psyr_4287 0.12 -0.5 5,112,918 + Psyr_4287 0.12 -1.0 5,112,919 - Psyr_4287 0.12 +0.7 5,112,919 - Psyr_4287 0.12 +0.5 5,112,919 - Psyr_4287 0.12 -0.3 5,112,920 + Psyr_4287 0.12 +1.7 5,112,920 + Psyr_4287 0.12 +3.5 5,112,920 + Psyr_4287 0.12 -0.3 5,112,920 + Psyr_4287 0.12 +0.4 5,112,920 + Psyr_4287 0.12 +0.6 5,112,920 + Psyr_4287 0.12 +3.6 5,112,921 - Psyr_4287 0.12 -2.4 5,112,921 - Psyr_4287 0.12 -0.1 5,112,921 - Psyr_4287 0.12 -0.4 5,112,921 - Psyr_4287 0.12 +0.1 5,112,970 - Psyr_4287 0.16 -0.7 5,112,970 - Psyr_4287 0.16 -0.9 5,113,041 - Psyr_4287 0.23 +2.5 5,113,275 + Psyr_4287 0.44 -1.6 5,113,275 + Psyr_4287 0.44 -1.7 5,113,275 + Psyr_4287 0.44 -1.4 5,113,275 + Psyr_4287 0.44 +2.5 5,113,275 + Psyr_4287 0.44 +1.9 5,113,275 + Psyr_4287 0.44 +0.7 5,113,275 + Psyr_4287 0.44 +0.9 5,113,275 + Psyr_4287 0.44 -1.1 5,113,275 + Psyr_4287 0.44 +1.7 5,113,275 + Psyr_4287 0.44 +0.8 5,113,276 - Psyr_4287 0.45 +0.9 5,113,276 - Psyr_4287 0.45 +0.2 5,113,276 - Psyr_4287 0.45 +0.8 5,113,276 - Psyr_4287 0.45 +4.8 5,113,276 - Psyr_4287 0.45 -0.4 5,113,276 - Psyr_4287 0.45 +3.3 5,113,428 + Psyr_4287 0.59 +4.2 5,113,463 + Psyr_4287 0.62 -2.1 5,113,647 + Psyr_4287 0.79 +3.8 5,113,647 + Psyr_4287 0.79 +0.7 5,113,647 + Psyr_4287 0.79 +2.1 5,113,647 + Psyr_4287 0.79 -0.6 5,113,647 + Psyr_4287 0.79 +4.4 5,113,737 + Psyr_4287 0.87 +0.1 5,113,737 + Psyr_4287 0.87 +3.3 5,113,737 + Psyr_4287 0.87 +1.1 5,113,737 + Psyr_4287 0.87 +1.5 5,113,737 + Psyr_4287 0.87 -1.1 5,113,738 - Psyr_4287 0.87 +3.3 5,113,738 - Psyr_4287 0.87 -1.8 5,113,738 - Psyr_4287 0.87 +3.1 5,113,738 - Psyr_4287 0.87 -0.9 5,113,738 - Psyr_4287 0.87 -2.2 5,113,738 - Psyr_4287 0.87 -1.1 5,113,738 - Psyr_4287 0.87 +1.0 5,113,738 - Psyr_4287 0.87 -1.9 5,113,738 - Psyr_4287 0.87 +3.5 5,113,741 + Psyr_4287 0.87 +2.9 5,113,742 - Psyr_4287 0.87 -0.5 5,113,742 - Psyr_4287 0.87 -1.0 5,113,742 - Psyr_4287 0.87 +0.4 5,113,742 - Psyr_4287 0.87 -0.6 5,113,742 - Psyr_4287 0.87 +1.1 5,113,833 + +3.6 5,113,895 - +3.1 5,113,895 - -0.4 5,114,107 - -0.9 5,114,174 + +1.7 5,114,257 + -0.9 5,114,257 + +0.8 5,114,314 + -2.2 5,114,314 + +4.3 5,114,318 + +1.1 5,114,319 - -0.7 5,114,319 - -2.4 5,114,319 - +2.7 5,114,321 + -1.6 5,114,321 + +0.0 5,114,336 - -1.7 5,114,347 + +2.7 5,114,347 + -1.2 5,114,348 - -1.2 5,114,348 - +0.1 5,114,420 - -4.6 5,114,459 + +2.1 5,114,460 - +2.5 5,114,526 + Psyr_4288 0.12 +2.5 5,114,526 + Psyr_4288 0.12 +0.6 5,114,527 - Psyr_4288 0.12 +2.5 5,114,527 - Psyr_4288 0.12 -2.9 5,114,559 + Psyr_4288 0.14 +1.4 5,114,559 + Psyr_4288 0.14 +2.9 5,114,559 + Psyr_4288 0.14 -1.0 5,114,560 - Psyr_4288 0.14 +1.7 5,114,560 - Psyr_4288 0.14 +2.5 5,114,560 - Psyr_4288 0.14 -1.1 5,114,560 - Psyr_4288 0.14 -1.9 5,114,560 - Psyr_4288 0.14 +1.0 5,114,560 - Psyr_4288 0.14 +0.3 5,114,629 - Psyr_4288 0.19 +2.9 5,114,629 - Psyr_4288 0.19 -0.9 5,114,751 + Psyr_4288 0.29 +0.3
Or see this region's nucleotide sequence