Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4238 and Psyr_4239 are separated by 74 nucleotides Psyr_4239 and Psyr_4240 are separated by 10 nucleotides Psyr_4240 and Psyr_4241 are separated by 10 nucleotides
Psyr_4238: Psyr_4238 - extracellular solute-binding protein, family 5, at 5,049,950 to 5,051,545
_4238
Psyr_4239: Psyr_4239 - Binding-protein-dependent transport systems inner membrane component, at 5,051,620 to 5,052,630
_4239
Psyr_4240: Psyr_4240 - Binding-protein-dependent transport systems inner membrane component, at 5,052,641 to 5,053,552
_4240
Psyr_4241: Psyr_4241 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal, at 5,053,563 to 5,054,531
_4241
Position (kb) 5051
5052
5053 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 5050.733 kb on + strand, within Psyr_4238 at 5050.751 kb on - strand, within Psyr_4238 at 5050.751 kb on - strand, within Psyr_4238 at 5050.751 kb on - strand, within Psyr_4238 at 5050.814 kb on + strand, within Psyr_4238 at 5050.814 kb on + strand, within Psyr_4238 at 5050.814 kb on + strand, within Psyr_4238 at 5050.815 kb on - strand, within Psyr_4238 at 5050.815 kb on - strand, within Psyr_4238 at 5050.815 kb on - strand, within Psyr_4238 at 5050.842 kb on - strand, within Psyr_4238 at 5050.842 kb on - strand, within Psyr_4238 at 5050.842 kb on - strand, within Psyr_4238 at 5050.842 kb on - strand, within Psyr_4238 at 5050.842 kb on - strand, within Psyr_4238 at 5050.842 kb on - strand, within Psyr_4238 at 5050.842 kb on - strand, within Psyr_4238 at 5050.899 kb on - strand, within Psyr_4238 at 5050.899 kb on - strand, within Psyr_4238 at 5050.899 kb on - strand, within Psyr_4238 at 5050.941 kb on + strand, within Psyr_4238 at 5050.942 kb on - strand, within Psyr_4238 at 5050.942 kb on - strand, within Psyr_4238 at 5050.942 kb on - strand, within Psyr_4238 at 5051.040 kb on + strand, within Psyr_4238 at 5051.055 kb on + strand, within Psyr_4238 at 5051.055 kb on + strand, within Psyr_4238 at 5051.055 kb on + strand, within Psyr_4238 at 5051.055 kb on + strand, within Psyr_4238 at 5051.056 kb on - strand, within Psyr_4238 at 5051.056 kb on - strand, within Psyr_4238 at 5051.110 kb on - strand, within Psyr_4238 at 5051.157 kb on + strand, within Psyr_4238 at 5051.157 kb on + strand, within Psyr_4238 at 5051.157 kb on + strand, within Psyr_4238 at 5051.157 kb on + strand, within Psyr_4238 at 5051.158 kb on - strand, within Psyr_4238 at 5051.312 kb on + strand, within Psyr_4238 at 5051.312 kb on + strand, within Psyr_4238 at 5051.312 kb on + strand, within Psyr_4238 at 5051.313 kb on - strand, within Psyr_4238 at 5051.313 kb on - strand, within Psyr_4238 at 5051.313 kb on - strand, within Psyr_4238 at 5051.313 kb on - strand, within Psyr_4238 at 5051.396 kb on + strand at 5051.396 kb on + strand at 5051.396 kb on + strand at 5051.397 kb on - strand at 5051.397 kb on - strand at 5051.397 kb on - strand at 5051.397 kb on - strand at 5051.397 kb on - strand at 5051.397 kb on - strand at 5051.397 kb on - strand at 5051.397 kb on - strand at 5051.398 kb on + strand at 5051.398 kb on + strand at 5051.399 kb on - strand at 5051.399 kb on - strand at 5051.399 kb on - strand at 5051.399 kb on - strand at 5051.399 kb on - strand at 5051.399 kb on - strand at 5051.543 kb on + strand at 5051.609 kb on + strand at 5051.609 kb on + strand at 5051.609 kb on + strand at 5051.609 kb on + strand at 5051.609 kb on + strand at 5051.609 kb on + strand at 5051.609 kb on + strand at 5051.609 kb on + strand at 5051.609 kb on + strand at 5051.610 kb on - strand at 5051.610 kb on - strand at 5051.610 kb on - strand at 5051.610 kb on - strand at 5051.610 kb on - strand at 5051.610 kb on - strand at 5051.625 kb on + strand at 5051.625 kb on + strand at 5051.625 kb on + strand at 5051.625 kb on + strand at 5051.626 kb on - strand at 5051.631 kb on + strand at 5051.681 kb on + strand at 5051.682 kb on - strand at 5051.806 kb on + strand, within Psyr_4239 at 5051.806 kb on + strand, within Psyr_4239 at 5051.815 kb on + strand, within Psyr_4239 at 5051.815 kb on + strand, within Psyr_4239 at 5051.815 kb on + strand, within Psyr_4239 at 5051.815 kb on + strand, within Psyr_4239 at 5051.816 kb on - strand, within Psyr_4239 at 5051.816 kb on - strand, within Psyr_4239 at 5051.816 kb on - strand, within Psyr_4239 at 5051.824 kb on + strand, within Psyr_4239 at 5051.824 kb on + strand, within Psyr_4239 at 5051.825 kb on - strand, within Psyr_4239 at 5051.825 kb on - strand, within Psyr_4239 at 5051.825 kb on - strand, within Psyr_4239 at 5052.040 kb on + strand, within Psyr_4239 at 5052.137 kb on - strand, within Psyr_4239 at 5052.137 kb on - strand, within Psyr_4239 at 5052.137 kb on - strand, within Psyr_4239 at 5052.137 kb on - strand, within Psyr_4239 at 5052.243 kb on - strand, within Psyr_4239 at 5052.316 kb on + strand, within Psyr_4239 at 5052.316 kb on + strand, within Psyr_4239 at 5052.316 kb on + strand, within Psyr_4239 at 5052.317 kb on - strand, within Psyr_4239 at 5052.317 kb on - strand, within Psyr_4239 at 5052.317 kb on - strand, within Psyr_4239 at 5052.317 kb on - strand, within Psyr_4239 at 5052.317 kb on - strand, within Psyr_4239 at 5052.317 kb on - strand, within Psyr_4239 at 5052.317 kb on - strand, within Psyr_4239 at 5052.363 kb on - strand, within Psyr_4239 at 5052.363 kb on - strand, within Psyr_4239 at 5052.652 kb on + strand at 5052.687 kb on - strand at 5053.169 kb on + strand, within Psyr_4240 at 5053.169 kb on + strand, within Psyr_4240 at 5053.169 kb on + strand, within Psyr_4240 at 5053.169 kb on + strand, within Psyr_4240 at 5053.169 kb on + strand, within Psyr_4240 at 5053.169 kb on + strand, within Psyr_4240 at 5053.169 kb on + strand, within Psyr_4240 at 5053.169 kb on + strand, within Psyr_4240 at 5053.170 kb on - strand, within Psyr_4240 at 5053.170 kb on - strand, within Psyr_4240 at 5053.170 kb on - strand, within Psyr_4240 at 5053.170 kb on - strand, within Psyr_4240 at 5053.170 kb on - strand, within Psyr_4240 at 5053.170 kb on - strand, within Psyr_4240 at 5053.170 kb on - strand, within Psyr_4240 at 5053.170 kb on - strand, within Psyr_4240 at 5053.170 kb on - strand, within Psyr_4240 at 5053.170 kb on - strand, within Psyr_4240 at 5053.170 kb on - strand, within Psyr_4240 at 5053.217 kb on + strand, within Psyr_4240 at 5053.217 kb on + strand, within Psyr_4240 at 5053.218 kb on - strand, within Psyr_4240 at 5053.374 kb on + strand, within Psyr_4240 at 5053.374 kb on + strand, within Psyr_4240 at 5053.424 kb on + strand, within Psyr_4240 at 5053.424 kb on + strand, within Psyr_4240 at 5053.424 kb on + strand, within Psyr_4240 at 5053.425 kb on - strand, within Psyr_4240 at 5053.425 kb on - strand, within Psyr_4240 at 5053.618 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 5,050,733 + Psyr_4238 0.49 -0.4 5,050,751 - Psyr_4238 0.50 -1.2 5,050,751 - Psyr_4238 0.50 +3.1 5,050,751 - Psyr_4238 0.50 +1.7 5,050,814 + Psyr_4238 0.54 +3.9 5,050,814 + Psyr_4238 0.54 -2.1 5,050,814 + Psyr_4238 0.54 -1.2 5,050,815 - Psyr_4238 0.54 -0.3 5,050,815 - Psyr_4238 0.54 +2.7 5,050,815 - Psyr_4238 0.54 +0.5 5,050,842 - Psyr_4238 0.56 -2.5 5,050,842 - Psyr_4238 0.56 -0.6 5,050,842 - Psyr_4238 0.56 +1.1 5,050,842 - Psyr_4238 0.56 +5.0 5,050,842 - Psyr_4238 0.56 -0.2 5,050,842 - Psyr_4238 0.56 -2.8 5,050,842 - Psyr_4238 0.56 -3.1 5,050,899 - Psyr_4238 0.59 +3.1 5,050,899 - Psyr_4238 0.59 -0.7 5,050,899 - Psyr_4238 0.59 +0.6 5,050,941 + Psyr_4238 0.62 -1.2 5,050,942 - Psyr_4238 0.62 +1.1 5,050,942 - Psyr_4238 0.62 +1.7 5,050,942 - Psyr_4238 0.62 -0.8 5,051,040 + Psyr_4238 0.68 -4.1 5,051,055 + Psyr_4238 0.69 -0.3 5,051,055 + Psyr_4238 0.69 -2.2 5,051,055 + Psyr_4238 0.69 -1.8 5,051,055 + Psyr_4238 0.69 +1.7 5,051,056 - Psyr_4238 0.69 +0.6 5,051,056 - Psyr_4238 0.69 -0.3 5,051,110 - Psyr_4238 0.73 -2.7 5,051,157 + Psyr_4238 0.76 -0.4 5,051,157 + Psyr_4238 0.76 +1.7 5,051,157 + Psyr_4238 0.76 +0.9 5,051,157 + Psyr_4238 0.76 -1.3 5,051,158 - Psyr_4238 0.76 -0.0 5,051,312 + Psyr_4238 0.85 -2.5 5,051,312 + Psyr_4238 0.85 +0.3 5,051,312 + Psyr_4238 0.85 +3.7 5,051,313 - Psyr_4238 0.85 -0.9 5,051,313 - Psyr_4238 0.85 -2.0 5,051,313 - Psyr_4238 0.85 -1.1 5,051,313 - Psyr_4238 0.85 -0.9 5,051,396 + +3.3 5,051,396 + +0.1 5,051,396 + -4.1 5,051,397 - +2.9 5,051,397 - +1.8 5,051,397 - +2.1 5,051,397 - +2.9 5,051,397 - -0.4 5,051,397 - -2.5 5,051,397 - -1.4 5,051,397 - -1.6 5,051,398 + -0.2 5,051,398 + +0.2 5,051,399 - +2.7 5,051,399 - -1.7 5,051,399 - +2.6 5,051,399 - +0.4 5,051,399 - +0.6 5,051,399 - +0.3 5,051,543 + +3.7 5,051,609 + -1.5 5,051,609 + -2.1 5,051,609 + +0.8 5,051,609 + -1.9 5,051,609 + -0.6 5,051,609 + -0.6 5,051,609 + +1.0 5,051,609 + -2.0 5,051,609 + +1.1 5,051,610 - +2.6 5,051,610 - -1.0 5,051,610 - -2.0 5,051,610 - -1.7 5,051,610 - -2.1 5,051,610 - -3.6 5,051,625 + +1.7 5,051,625 + +0.9 5,051,625 + +0.8 5,051,625 + -0.6 5,051,626 - +5.0 5,051,631 + +4.0 5,051,681 + +1.1 5,051,682 - -1.5 5,051,806 + Psyr_4239 0.18 +4.0 5,051,806 + Psyr_4239 0.18 -0.5 5,051,815 + Psyr_4239 0.19 +3.1 5,051,815 + Psyr_4239 0.19 +4.4 5,051,815 + Psyr_4239 0.19 +0.0 5,051,815 + Psyr_4239 0.19 +3.3 5,051,816 - Psyr_4239 0.19 -1.4 5,051,816 - Psyr_4239 0.19 +4.1 5,051,816 - Psyr_4239 0.19 -0.0 5,051,824 + Psyr_4239 0.20 +2.7 5,051,824 + Psyr_4239 0.20 +3.3 5,051,825 - Psyr_4239 0.20 +1.1 5,051,825 - Psyr_4239 0.20 -0.8 5,051,825 - Psyr_4239 0.20 +0.1 5,052,040 + Psyr_4239 0.42 +1.3 5,052,137 - Psyr_4239 0.51 +1.7 5,052,137 - Psyr_4239 0.51 +1.5 5,052,137 - Psyr_4239 0.51 -0.6 5,052,137 - Psyr_4239 0.51 +2.4 5,052,243 - Psyr_4239 0.62 -0.5 5,052,316 + Psyr_4239 0.69 +0.5 5,052,316 + Psyr_4239 0.69 +0.4 5,052,316 + Psyr_4239 0.69 +0.1 5,052,317 - Psyr_4239 0.69 -1.0 5,052,317 - Psyr_4239 0.69 +3.1 5,052,317 - Psyr_4239 0.69 -0.6 5,052,317 - Psyr_4239 0.69 +4.6 5,052,317 - Psyr_4239 0.69 -2.5 5,052,317 - Psyr_4239 0.69 +1.1 5,052,317 - Psyr_4239 0.69 -1.4 5,052,363 - Psyr_4239 0.73 +3.3 5,052,363 - Psyr_4239 0.73 -0.5 5,052,652 + +2.4 5,052,687 - -2.6 5,053,169 + Psyr_4240 0.58 +2.4 5,053,169 + Psyr_4240 0.58 +0.5 5,053,169 + Psyr_4240 0.58 +3.1 5,053,169 + Psyr_4240 0.58 -0.4 5,053,169 + Psyr_4240 0.58 -2.6 5,053,169 + Psyr_4240 0.58 +3.7 5,053,169 + Psyr_4240 0.58 +0.1 5,053,169 + Psyr_4240 0.58 +3.4 5,053,170 - Psyr_4240 0.58 +0.0 5,053,170 - Psyr_4240 0.58 -0.7 5,053,170 - Psyr_4240 0.58 -0.5 5,053,170 - Psyr_4240 0.58 +4.0 5,053,170 - Psyr_4240 0.58 +2.1 5,053,170 - Psyr_4240 0.58 +0.2 5,053,170 - Psyr_4240 0.58 -2.1 5,053,170 - Psyr_4240 0.58 -0.9 5,053,170 - Psyr_4240 0.58 +0.1 5,053,170 - Psyr_4240 0.58 -1.7 5,053,170 - Psyr_4240 0.58 -2.0 5,053,217 + Psyr_4240 0.63 -2.5 5,053,217 + Psyr_4240 0.63 +3.3 5,053,218 - Psyr_4240 0.63 -0.2 5,053,374 + Psyr_4240 0.80 +1.1 5,053,374 + Psyr_4240 0.80 +3.6 5,053,424 + Psyr_4240 0.86 -0.8 5,053,424 + Psyr_4240 0.86 +0.0 5,053,424 + Psyr_4240 0.86 +4.0 5,053,425 - Psyr_4240 0.86 +0.0 5,053,425 - Psyr_4240 0.86 +3.4 5,053,618 + -0.8
Or see this region's nucleotide sequence