Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4159

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_4158 and Psyr_4159 are separated by 180 nucleotidesPsyr_4159 and Psyr_4160 overlap by 4 nucleotidesPsyr_4160 and Psyr_4161 are separated by 67 nucleotides Psyr_4158: Psyr_4158 - conserved hypothetical protein, at 4,944,687 to 4,948,502 _4158 Psyr_4159: Psyr_4159 - RNAse G, at 4,948,683 to 4,950,140 _4159 Psyr_4160: Psyr_4160 - Maf-like protein, at 4,950,137 to 4,950,739 _4160 Psyr_4161: Psyr_4161 - Rod shape-determining protein MreD, at 4,950,807 to 4,951,298 _4161 Position (kb) 4948 4949 4950 4951Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 4947.823 kb on + strand, within Psyr_4158at 4947.823 kb on + strand, within Psyr_4158at 4947.824 kb on - strand, within Psyr_4158at 4947.824 kb on - strand, within Psyr_4158at 4947.935 kb on - strand, within Psyr_4158at 4947.960 kb on + strand, within Psyr_4158at 4947.960 kb on + strand, within Psyr_4158at 4947.960 kb on + strand, within Psyr_4158at 4947.960 kb on + strand, within Psyr_4158at 4947.960 kb on + strand, within Psyr_4158at 4947.961 kb on - strand, within Psyr_4158at 4947.961 kb on - strand, within Psyr_4158at 4947.961 kb on - strand, within Psyr_4158at 4947.961 kb on - strand, within Psyr_4158at 4947.961 kb on - strand, within Psyr_4158at 4947.961 kb on - strand, within Psyr_4158at 4947.964 kb on + strand, within Psyr_4158at 4947.964 kb on + strand, within Psyr_4158at 4947.964 kb on + strand, within Psyr_4158at 4947.964 kb on + strand, within Psyr_4158at 4947.964 kb on + strand, within Psyr_4158at 4947.964 kb on + strand, within Psyr_4158at 4947.964 kb on + strand, within Psyr_4158at 4947.965 kb on - strand, within Psyr_4158at 4947.965 kb on - strand, within Psyr_4158at 4947.965 kb on - strand, within Psyr_4158at 4947.965 kb on - strand, within Psyr_4158at 4947.965 kb on - strand, within Psyr_4158at 4947.965 kb on - strand, within Psyr_4158at 4947.965 kb on - strand, within Psyr_4158at 4947.965 kb on - strand, within Psyr_4158at 4947.965 kb on - strand, within Psyr_4158at 4947.965 kb on - strand, within Psyr_4158at 4947.965 kb on - strand, within Psyr_4158at 4947.965 kb on - strand, within Psyr_4158at 4948.222 kb on - strandat 4948.304 kb on + strandat 4948.304 kb on + strandat 4948.305 kb on - strandat 4948.305 kb on - strandat 4948.417 kb on + strandat 4948.417 kb on + strandat 4948.418 kb on - strandat 4948.418 kb on - strandat 4948.584 kb on - strandat 4948.584 kb on - strandat 4948.629 kb on + strandat 4948.630 kb on - strandat 4948.630 kb on - strandat 4948.660 kb on + strandat 4948.702 kb on + strandat 4948.703 kb on - strandat 4948.703 kb on - strandat 4948.717 kb on + strandat 4948.717 kb on + strandat 4948.717 kb on + strandat 4948.718 kb on - strandat 4948.718 kb on - strandat 4948.718 kb on - strandat 4948.718 kb on - strandat 4948.754 kb on + strandat 4948.754 kb on + strandat 4948.849 kb on + strand, within Psyr_4159at 4948.850 kb on - strand, within Psyr_4159at 4948.850 kb on - strand, within Psyr_4159at 4948.889 kb on - strand, within Psyr_4159at 4949.344 kb on + strand, within Psyr_4159at 4949.591 kb on - strand, within Psyr_4159at 4949.669 kb on + strand, within Psyr_4159at 4949.669 kb on + strand, within Psyr_4159at 4949.773 kb on + strand, within Psyr_4159at 4949.773 kb on + strand, within Psyr_4159at 4949.773 kb on + strand, within Psyr_4159at 4949.773 kb on + strand, within Psyr_4159at 4949.773 kb on + strand, within Psyr_4159at 4949.773 kb on + strand, within Psyr_4159at 4949.773 kb on + strand, within Psyr_4159at 4949.774 kb on - strand, within Psyr_4159at 4949.774 kb on - strand, within Psyr_4159at 4949.774 kb on - strand, within Psyr_4159at 4949.774 kb on - strand, within Psyr_4159at 4949.774 kb on - strand, within Psyr_4159at 4949.774 kb on - strand, within Psyr_4159at 4949.774 kb on - strand, within Psyr_4159at 4949.774 kb on - strand, within Psyr_4159at 4949.877 kb on + strand, within Psyr_4159at 4949.877 kb on + strand, within Psyr_4159at 4949.877 kb on + strand, within Psyr_4159at 4949.877 kb on + strand, within Psyr_4159at 4949.877 kb on + strand, within Psyr_4159at 4949.878 kb on - strand, within Psyr_4159at 4949.922 kb on + strand, within Psyr_4159at 4949.923 kb on - strand, within Psyr_4159at 4949.923 kb on - strand, within Psyr_4159at 4950.016 kb on + strandat 4950.016 kb on + strandat 4950.016 kb on + strandat 4950.016 kb on + strandat 4950.016 kb on + strandat 4950.017 kb on - strandat 4950.017 kb on - strandat 4950.017 kb on - strandat 4950.021 kb on - strandat 4950.174 kb on - strandat 4950.234 kb on + strand, within Psyr_4160at 4950.235 kb on - strand, within Psyr_4160at 4950.235 kb on - strand, within Psyr_4160at 4950.235 kb on - strand, within Psyr_4160at 4950.373 kb on + strand, within Psyr_4160at 4950.609 kb on + strand, within Psyr_4160at 4950.609 kb on + strand, within Psyr_4160at 4950.609 kb on + strand, within Psyr_4160at 4950.609 kb on + strand, within Psyr_4160at 4950.610 kb on - strand, within Psyr_4160at 4950.610 kb on - strand, within Psyr_4160at 4950.662 kb on + strand, within Psyr_4160at 4950.662 kb on + strand, within Psyr_4160at 4950.727 kb on - strandat 4950.740 kb on - strandat 4950.808 kb on + strandat 4950.808 kb on + strandat 4950.847 kb on + strandat 4950.848 kb on - strandat 4950.967 kb on - strand, within Psyr_4161at 4951.135 kb on + strand, within Psyr_4161at 4951.135 kb on + strand, within Psyr_4161at 4951.136 kb on - strand, within Psyr_4161

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
remove
4,947,823 + Psyr_4158 0.82 -5.1
4,947,823 + Psyr_4158 0.82 +1.1
4,947,824 - Psyr_4158 0.82 +0.1
4,947,824 - Psyr_4158 0.82 -1.2
4,947,935 - Psyr_4158 0.85 -1.6
4,947,960 + Psyr_4158 0.86 -4.5
4,947,960 + Psyr_4158 0.86 +0.1
4,947,960 + Psyr_4158 0.86 -2.5
4,947,960 + Psyr_4158 0.86 +0.1
4,947,960 + Psyr_4158 0.86 +1.7
4,947,961 - Psyr_4158 0.86 +0.1
4,947,961 - Psyr_4158 0.86 -4.4
4,947,961 - Psyr_4158 0.86 +0.1
4,947,961 - Psyr_4158 0.86 +1.1
4,947,961 - Psyr_4158 0.86 -3.5
4,947,961 - Psyr_4158 0.86 -3.2
4,947,964 + Psyr_4158 0.86 +1.7
4,947,964 + Psyr_4158 0.86 +0.1
4,947,964 + Psyr_4158 0.86 +0.1
4,947,964 + Psyr_4158 0.86 +1.1
4,947,964 + Psyr_4158 0.86 +0.1
4,947,964 + Psyr_4158 0.86 +0.1
4,947,964 + Psyr_4158 0.86 -3.1
4,947,965 - Psyr_4158 0.86 +2.1
4,947,965 - Psyr_4158 0.86 -3.7
4,947,965 - Psyr_4158 0.86 -1.9
4,947,965 - Psyr_4158 0.86 +0.1
4,947,965 - Psyr_4158 0.86 -4.2
4,947,965 - Psyr_4158 0.86 -2.9
4,947,965 - Psyr_4158 0.86 -3.1
4,947,965 - Psyr_4158 0.86 +0.1
4,947,965 - Psyr_4158 0.86 +0.1
4,947,965 - Psyr_4158 0.86 -2.9
4,947,965 - Psyr_4158 0.86 +0.1
4,947,965 - Psyr_4158 0.86 +0.1
4,948,222 - -3.6
4,948,304 + +0.1
4,948,304 + +0.1
4,948,305 - +0.1
4,948,305 - -3.6
4,948,417 + +0.1
4,948,417 + -4.2
4,948,418 - -4.7
4,948,418 - +2.1
4,948,584 - -0.7
4,948,584 - +0.5
4,948,629 + +1.7
4,948,630 - +3.4
4,948,630 - +0.1
4,948,660 + +2.1
4,948,702 + +0.1
4,948,703 - -1.2
4,948,703 - +0.5
4,948,717 + +3.2
4,948,717 + +1.1
4,948,717 + -0.3
4,948,718 - +2.7
4,948,718 - -0.8
4,948,718 - -4.6
4,948,718 - -1.9
4,948,754 + +0.1
4,948,754 + -1.2
4,948,849 + Psyr_4159 0.11 +2.7
4,948,850 - Psyr_4159 0.11 +1.7
4,948,850 - Psyr_4159 0.11 -2.0
4,948,889 - Psyr_4159 0.14 +0.5
4,949,344 + Psyr_4159 0.45 +2.4
4,949,591 - Psyr_4159 0.62 -1.5
4,949,669 + Psyr_4159 0.68 +1.1
4,949,669 + Psyr_4159 0.68 -3.0
4,949,773 + Psyr_4159 0.75 -0.8
4,949,773 + Psyr_4159 0.75 +0.3
4,949,773 + Psyr_4159 0.75 -1.1
4,949,773 + Psyr_4159 0.75 -2.1
4,949,773 + Psyr_4159 0.75 +1.1
4,949,773 + Psyr_4159 0.75 +0.1
4,949,773 + Psyr_4159 0.75 -1.2
4,949,774 - Psyr_4159 0.75 -1.2
4,949,774 - Psyr_4159 0.75 -3.0
4,949,774 - Psyr_4159 0.75 -1.8
4,949,774 - Psyr_4159 0.75 -3.0
4,949,774 - Psyr_4159 0.75 -1.1
4,949,774 - Psyr_4159 0.75 -0.4
4,949,774 - Psyr_4159 0.75 +0.1
4,949,774 - Psyr_4159 0.75 -2.8
4,949,877 + Psyr_4159 0.82 +0.5
4,949,877 + Psyr_4159 0.82 -0.2
4,949,877 + Psyr_4159 0.82 -3.2
4,949,877 + Psyr_4159 0.82 -3.2
4,949,877 + Psyr_4159 0.82 -3.7
4,949,878 - Psyr_4159 0.82 -2.6
4,949,922 + Psyr_4159 0.85 +2.1
4,949,923 - Psyr_4159 0.85 +2.1
4,949,923 - Psyr_4159 0.85 -3.4
4,950,016 + +1.1
4,950,016 + -3.5
4,950,016 + +1.1
4,950,016 + +0.4
4,950,016 + -2.4
4,950,017 - -2.2
4,950,017 - -2.0
4,950,017 - +0.1
4,950,021 - -2.0
4,950,174 - -0.6
4,950,234 + Psyr_4160 0.16 -1.3
4,950,235 - Psyr_4160 0.16 +2.1
4,950,235 - Psyr_4160 0.16 -0.9
4,950,235 - Psyr_4160 0.16 +1.2
4,950,373 + Psyr_4160 0.39 -4.2
4,950,609 + Psyr_4160 0.78 +2.1
4,950,609 + Psyr_4160 0.78 -1.7
4,950,609 + Psyr_4160 0.78 +3.9
4,950,609 + Psyr_4160 0.78 -3.1
4,950,610 - Psyr_4160 0.78 -1.5
4,950,610 - Psyr_4160 0.78 -0.7
4,950,662 + Psyr_4160 0.87 -1.7
4,950,662 + Psyr_4160 0.87 -1.6
4,950,727 - -2.1
4,950,740 - +4.1
4,950,808 + +3.4
4,950,808 + -0.7
4,950,847 + -1.7
4,950,848 - -2.4
4,950,967 - Psyr_4161 0.33 -0.2
4,951,135 + Psyr_4161 0.67 +0.4
4,951,135 + Psyr_4161 0.67 -4.1
4,951,136 - Psyr_4161 0.67 +2.7

Or see this region's nucleotide sequence