Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4138

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4135 and Psyr_4136 are separated by 22 nucleotidesPsyr_4136 and Psyr_4137 are separated by 115 nucleotidesPsyr_4137 and Psyr_4138 overlap by 4 nucleotidesPsyr_4138 and Psyr_4139 are separated by 10 nucleotidesPsyr_4139 and Psyr_4140 overlap by 1 nucleotides Psyr_4135: Psyr_4135 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 4,926,055 to 4,927,320 _4135 Psyr_4136: Psyr_4136 - BolA-like protein, at 4,927,343 to 4,927,582 _4136 Psyr_4137: Psyr_4137 - Sulfate transporter/antisigma-factor antagonist STAS, at 4,927,698 to 4,928,003 _4137 Psyr_4138: Psyr_4138 - Toluene tolerance, at 4,928,000 to 4,928,650 _4138 Psyr_4139: Psyr_4139 - Mce4/Rv3499c/MTV023.06c protein, at 4,928,661 to 4,929,128 _4139 Psyr_4140: Psyr_4140 - Protein of unknown function DUF140, at 4,929,128 to 4,929,925 _4140 Position (kb) 4927 4928 4929Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 4927.435 kb on - strand, within Psyr_4136at 4927.435 kb on - strand, within Psyr_4136at 4927.435 kb on - strand, within Psyr_4136at 4927.435 kb on - strand, within Psyr_4136at 4927.435 kb on - strand, within Psyr_4136at 4927.741 kb on - strand, within Psyr_4137at 4928.214 kb on + strand, within Psyr_4138at 4928.331 kb on + strand, within Psyr_4138at 4928.332 kb on - strand, within Psyr_4138at 4928.404 kb on - strand, within Psyr_4138at 4928.404 kb on - strand, within Psyr_4138at 4928.404 kb on - strand, within Psyr_4138at 4928.478 kb on + strand, within Psyr_4138at 4928.479 kb on - strand, within Psyr_4138at 4928.479 kb on - strand, within Psyr_4138at 4928.479 kb on - strand, within Psyr_4138at 4928.503 kb on - strand, within Psyr_4138at 4928.503 kb on - strand, within Psyr_4138at 4928.503 kb on - strand, within Psyr_4138at 4928.618 kb on + strandat 4928.619 kb on - strandat 4928.642 kb on - strandat 4928.642 kb on - strandat 4928.679 kb on - strandat 4928.679 kb on - strandat 4928.685 kb on - strandat 4928.685 kb on - strandat 4928.744 kb on + strand, within Psyr_4139at 4928.797 kb on + strand, within Psyr_4139at 4928.797 kb on + strand, within Psyr_4139at 4928.797 kb on + strand, within Psyr_4139at 4928.797 kb on + strand, within Psyr_4139at 4928.798 kb on - strand, within Psyr_4139at 4928.798 kb on - strand, within Psyr_4139at 4928.900 kb on + strand, within Psyr_4139at 4928.955 kb on + strand, within Psyr_4139at 4928.955 kb on + strand, within Psyr_4139at 4928.955 kb on + strand, within Psyr_4139at 4928.955 kb on + strand, within Psyr_4139at 4928.956 kb on - strand, within Psyr_4139at 4928.956 kb on - strand, within Psyr_4139at 4928.995 kb on + strand, within Psyr_4139at 4928.995 kb on + strand, within Psyr_4139at 4928.995 kb on + strand, within Psyr_4139at 4928.995 kb on + strand, within Psyr_4139at 4928.996 kb on - strand, within Psyr_4139at 4928.996 kb on - strand, within Psyr_4139at 4929.001 kb on + strand, within Psyr_4139at 4929.002 kb on - strand, within Psyr_4139at 4929.008 kb on + strand, within Psyr_4139at 4929.011 kb on - strand, within Psyr_4139at 4929.011 kb on - strand, within Psyr_4139at 4929.011 kb on - strand, within Psyr_4139at 4929.290 kb on + strand, within Psyr_4140at 4929.290 kb on + strand, within Psyr_4140at 4929.290 kb on + strand, within Psyr_4140at 4929.372 kb on + strand, within Psyr_4140at 4929.489 kb on + strand, within Psyr_4140at 4929.489 kb on + strand, within Psyr_4140

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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4,927,435 - Psyr_4136 0.38 +3.8
4,927,435 - Psyr_4136 0.38 -1.1
4,927,435 - Psyr_4136 0.38 -2.7
4,927,435 - Psyr_4136 0.38 +1.1
4,927,435 - Psyr_4136 0.38 +3.5
4,927,741 - Psyr_4137 0.14 -1.1
4,928,214 + Psyr_4138 0.33 -1.3
4,928,331 + Psyr_4138 0.51 +0.1
4,928,332 - Psyr_4138 0.51 -1.5
4,928,404 - Psyr_4138 0.62 +1.7
4,928,404 - Psyr_4138 0.62 -0.0
4,928,404 - Psyr_4138 0.62 -1.5
4,928,478 + Psyr_4138 0.73 +0.1
4,928,479 - Psyr_4138 0.74 -1.9
4,928,479 - Psyr_4138 0.74 -1.4
4,928,479 - Psyr_4138 0.74 +0.1
4,928,503 - Psyr_4138 0.77 -2.3
4,928,503 - Psyr_4138 0.77 +0.1
4,928,503 - Psyr_4138 0.77 -4.7
4,928,618 + -2.5
4,928,619 - -3.4
4,928,642 - +1.1
4,928,642 - +0.4
4,928,679 - -3.8
4,928,679 - -4.3
4,928,685 - +0.1
4,928,685 - -4.8
4,928,744 + Psyr_4139 0.18 -2.2
4,928,797 + Psyr_4139 0.29 -0.8
4,928,797 + Psyr_4139 0.29 -2.7
4,928,797 + Psyr_4139 0.29 +1.7
4,928,797 + Psyr_4139 0.29 -4.5
4,928,798 - Psyr_4139 0.29 -3.9
4,928,798 - Psyr_4139 0.29 +0.1
4,928,900 + Psyr_4139 0.51 -4.5
4,928,955 + Psyr_4139 0.63 +0.1
4,928,955 + Psyr_4139 0.63 -3.5
4,928,955 + Psyr_4139 0.63 +0.1
4,928,955 + Psyr_4139 0.63 +0.1
4,928,956 - Psyr_4139 0.63 -2.4
4,928,956 - Psyr_4139 0.63 +2.7
4,928,995 + Psyr_4139 0.71 +0.1
4,928,995 + Psyr_4139 0.71 +2.9
4,928,995 + Psyr_4139 0.71 +0.1
4,928,995 + Psyr_4139 0.71 +1.1
4,928,996 - Psyr_4139 0.72 +1.1
4,928,996 - Psyr_4139 0.72 -2.3
4,929,001 + Psyr_4139 0.73 +3.1
4,929,002 - Psyr_4139 0.73 +2.4
4,929,008 + Psyr_4139 0.74 -0.1
4,929,011 - Psyr_4139 0.75 -1.6
4,929,011 - Psyr_4139 0.75 -3.3
4,929,011 - Psyr_4139 0.75 +0.1
4,929,290 + Psyr_4140 0.20 -3.0
4,929,290 + Psyr_4140 0.20 +1.1
4,929,290 + Psyr_4140 0.20 -1.8
4,929,372 + Psyr_4140 0.31 -2.3
4,929,489 + Psyr_4140 0.45 -2.5
4,929,489 + Psyr_4140 0.45 -3.1

Or see this region's nucleotide sequence