Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4063 and Psyr_4064 are separated by 61 nucleotides Psyr_4064 and Psyr_4065 are separated by 16 nucleotides
Psyr_4063: Psyr_4063 - Protein of unknown function DUF1111, at 4,847,035 to 4,848,462
_4063
Psyr_4064: Psyr_4064 - lipoprotein, putative, at 4,848,524 to 4,849,588
_4064
Psyr_4065: Psyr_4065 - Protein of unknown function DUF1513, at 4,849,605 to 4,850,711
_4065
Position (kb) 4848
4849
4850 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 4847.543 kb on - strand, within Psyr_4063 at 4847.543 kb on - strand, within Psyr_4063 at 4848.016 kb on + strand, within Psyr_4063 at 4848.016 kb on + strand, within Psyr_4063 at 4848.016 kb on + strand, within Psyr_4063 at 4848.016 kb on + strand, within Psyr_4063 at 4848.017 kb on - strand, within Psyr_4063 at 4848.017 kb on - strand, within Psyr_4063 at 4848.017 kb on - strand, within Psyr_4063 at 4848.017 kb on - strand, within Psyr_4063 at 4848.511 kb on + strand at 4848.511 kb on + strand at 4848.512 kb on - strand at 4848.644 kb on + strand, within Psyr_4064 at 4848.644 kb on + strand, within Psyr_4064 at 4848.644 kb on + strand, within Psyr_4064 at 4848.644 kb on + strand, within Psyr_4064 at 4848.645 kb on - strand, within Psyr_4064 at 4848.645 kb on - strand, within Psyr_4064 at 4848.819 kb on + strand, within Psyr_4064 at 4848.819 kb on + strand, within Psyr_4064 at 4848.820 kb on - strand, within Psyr_4064 at 4848.820 kb on - strand, within Psyr_4064 at 4848.820 kb on - strand, within Psyr_4064 at 4848.820 kb on - strand, within Psyr_4064 at 4848.944 kb on + strand, within Psyr_4064 at 4848.950 kb on + strand, within Psyr_4064 at 4848.950 kb on + strand, within Psyr_4064 at 4848.950 kb on + strand, within Psyr_4064 at 4848.950 kb on + strand, within Psyr_4064 at 4848.950 kb on + strand, within Psyr_4064 at 4848.950 kb on + strand, within Psyr_4064 at 4848.950 kb on + strand, within Psyr_4064 at 4848.950 kb on + strand, within Psyr_4064 at 4848.950 kb on + strand, within Psyr_4064 at 4848.950 kb on + strand, within Psyr_4064 at 4848.950 kb on + strand, within Psyr_4064 at 4848.950 kb on + strand, within Psyr_4064 at 4848.951 kb on - strand, within Psyr_4064 at 4848.951 kb on - strand, within Psyr_4064 at 4848.951 kb on - strand, within Psyr_4064 at 4848.951 kb on - strand, within Psyr_4064 at 4848.951 kb on - strand, within Psyr_4064 at 4848.951 kb on - strand, within Psyr_4064 at 4848.951 kb on - strand, within Psyr_4064 at 4848.951 kb on - strand, within Psyr_4064 at 4848.951 kb on - strand, within Psyr_4064 at 4848.951 kb on - strand, within Psyr_4064 at 4848.951 kb on - strand, within Psyr_4064 at 4848.951 kb on - strand, within Psyr_4064 at 4848.951 kb on - strand, within Psyr_4064 at 4849.597 kb on + strand at 4849.597 kb on + strand at 4849.597 kb on + strand at 4849.597 kb on + strand at 4849.597 kb on + strand at 4849.597 kb on + strand at 4849.597 kb on + strand at 4849.598 kb on - strand at 4849.598 kb on - strand at 4849.598 kb on - strand at 4849.598 kb on - strand at 4849.598 kb on - strand at 4849.598 kb on - strand at 4849.598 kb on - strand at 4849.598 kb on - strand at 4849.598 kb on - strand at 4849.598 kb on - strand at 4849.598 kb on - strand at 4849.741 kb on - strand, within Psyr_4065 at 4849.774 kb on + strand, within Psyr_4065 at 4849.862 kb on + strand, within Psyr_4065 at 4849.862 kb on + strand, within Psyr_4065 at 4849.863 kb on - strand, within Psyr_4065 at 4849.872 kb on + strand, within Psyr_4065 at 4849.872 kb on + strand, within Psyr_4065 at 4849.872 kb on + strand, within Psyr_4065 at 4849.873 kb on - strand, within Psyr_4065 at 4849.938 kb on + strand, within Psyr_4065 at 4849.939 kb on - strand, within Psyr_4065 at 4849.939 kb on - strand, within Psyr_4065 at 4849.978 kb on - strand, within Psyr_4065 at 4850.017 kb on + strand, within Psyr_4065 at 4850.269 kb on + strand, within Psyr_4065 at 4850.427 kb on + strand, within Psyr_4065 at 4850.428 kb on - strand, within Psyr_4065 at 4850.428 kb on - strand, within Psyr_4065 at 4850.428 kb on - strand, within Psyr_4065 at 4850.428 kb on - strand, within Psyr_4065 at 4850.446 kb on + strand, within Psyr_4065 at 4850.447 kb on - strand, within Psyr_4065
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 4,847,543 - Psyr_4063 0.36 +0.3 4,847,543 - Psyr_4063 0.36 -0.4 4,848,016 + Psyr_4063 0.69 -0.9 4,848,016 + Psyr_4063 0.69 +2.9 4,848,016 + Psyr_4063 0.69 -1.9 4,848,016 + Psyr_4063 0.69 -1.4 4,848,017 - Psyr_4063 0.69 +3.5 4,848,017 - Psyr_4063 0.69 +0.9 4,848,017 - Psyr_4063 0.69 +3.6 4,848,017 - Psyr_4063 0.69 +0.1 4,848,511 + +3.5 4,848,511 + +0.1 4,848,512 - -1.1 4,848,644 + Psyr_4064 0.11 +0.1 4,848,644 + Psyr_4064 0.11 +0.5 4,848,644 + Psyr_4064 0.11 -1.3 4,848,644 + Psyr_4064 0.11 +1.6 4,848,645 - Psyr_4064 0.11 -1.5 4,848,645 - Psyr_4064 0.11 +1.3 4,848,819 + Psyr_4064 0.28 +1.1 4,848,819 + Psyr_4064 0.28 +2.9 4,848,820 - Psyr_4064 0.28 +2.9 4,848,820 - Psyr_4064 0.28 +0.1 4,848,820 - Psyr_4064 0.28 -0.4 4,848,820 - Psyr_4064 0.28 +2.9 4,848,944 + Psyr_4064 0.39 +3.4 4,848,950 + Psyr_4064 0.40 +1.1 4,848,950 + Psyr_4064 0.40 +3.8 4,848,950 + Psyr_4064 0.40 -0.9 4,848,950 + Psyr_4064 0.40 +2.9 4,848,950 + Psyr_4064 0.40 +4.8 4,848,950 + Psyr_4064 0.40 +3.6 4,848,950 + Psyr_4064 0.40 -0.0 4,848,950 + Psyr_4064 0.40 +2.1 4,848,950 + Psyr_4064 0.40 +3.1 4,848,950 + Psyr_4064 0.40 +1.6 4,848,950 + Psyr_4064 0.40 +3.6 4,848,950 + Psyr_4064 0.40 +1.1 4,848,951 - Psyr_4064 0.40 +1.1 4,848,951 - Psyr_4064 0.40 +2.1 4,848,951 - Psyr_4064 0.40 -0.5 4,848,951 - Psyr_4064 0.40 +2.9 4,848,951 - Psyr_4064 0.40 +2.1 4,848,951 - Psyr_4064 0.40 -2.8 4,848,951 - Psyr_4064 0.40 -0.7 4,848,951 - Psyr_4064 0.40 -1.4 4,848,951 - Psyr_4064 0.40 -1.0 4,848,951 - Psyr_4064 0.40 +1.6 4,848,951 - Psyr_4064 0.40 -0.9 4,848,951 - Psyr_4064 0.40 +2.1 4,848,951 - Psyr_4064 0.40 +4.0 4,849,597 + -0.3 4,849,597 + -0.9 4,849,597 + +0.1 4,849,597 + -0.4 4,849,597 + -1.6 4,849,597 + +3.1 4,849,597 + +3.5 4,849,598 - +3.5 4,849,598 - +0.1 4,849,598 - +0.1 4,849,598 - +2.1 4,849,598 - +3.5 4,849,598 - +0.7 4,849,598 - +1.4 4,849,598 - +3.1 4,849,598 - +0.6 4,849,598 - -3.1 4,849,598 - -3.5 4,849,741 - Psyr_4065 0.12 +3.2 4,849,774 + Psyr_4065 0.15 -0.1 4,849,862 + Psyr_4065 0.23 +0.4 4,849,862 + Psyr_4065 0.23 -1.9 4,849,863 - Psyr_4065 0.23 +2.1 4,849,872 + Psyr_4065 0.24 -1.8 4,849,872 + Psyr_4065 0.24 -1.2 4,849,872 + Psyr_4065 0.24 -3.2 4,849,873 - Psyr_4065 0.24 -1.4 4,849,938 + Psyr_4065 0.30 +0.2 4,849,939 - Psyr_4065 0.30 -0.9 4,849,939 - Psyr_4065 0.30 -3.1 4,849,978 - Psyr_4065 0.34 +4.0 4,850,017 + Psyr_4065 0.37 +1.4 4,850,269 + Psyr_4065 0.60 +4.7 4,850,427 + Psyr_4065 0.74 +4.0 4,850,428 - Psyr_4065 0.74 -0.6 4,850,428 - Psyr_4065 0.74 -0.9 4,850,428 - Psyr_4065 0.74 +4.1 4,850,428 - Psyr_4065 0.74 +0.7 4,850,446 + Psyr_4065 0.76 +0.2 4,850,447 - Psyr_4065 0.76 -1.3
Or see this region's nucleotide sequence