Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3993

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3992 and Psyr_3993 are separated by 336 nucleotidesPsyr_3993 and Psyr_3994 are separated by 69 nucleotides Psyr_3992: Psyr_3992 - Protein of unknown function DUF477, at 4,750,621 to 4,751,334 _3992 Psyr_3993: Psyr_3993 - Glycoside hydrolase, family 3, N-terminal:Glycoside hydrolase, family 3, C-terminal, at 4,751,671 to 4,753,932 _3993 Psyr_3994: Psyr_3994 - ATP-binding region, ATPase-like:Histidine kinase A, N-terminal, at 4,754,002 to 4,755,759 _3994 Position (kb) 4751 4752 4753 4754Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 4750.726 kb on + strand, within Psyr_3992at 4750.726 kb on + strand, within Psyr_3992at 4750.726 kb on + strand, within Psyr_3992at 4750.726 kb on + strand, within Psyr_3992at 4750.727 kb on - strand, within Psyr_3992at 4750.727 kb on - strand, within Psyr_3992at 4750.727 kb on - strand, within Psyr_3992at 4750.727 kb on - strand, within Psyr_3992at 4750.727 kb on - strand, within Psyr_3992at 4750.727 kb on - strand, within Psyr_3992at 4750.727 kb on - strand, within Psyr_3992at 4750.727 kb on - strand, within Psyr_3992at 4750.799 kb on + strand, within Psyr_3992at 4750.800 kb on - strandat 4750.883 kb on - strand, within Psyr_3992at 4751.282 kb on - strandat 4751.306 kb on + strandat 4751.306 kb on + strandat 4751.306 kb on + strandat 4751.306 kb on + strandat 4751.307 kb on - strandat 4751.307 kb on - strandat 4751.307 kb on - strandat 4751.307 kb on - strandat 4751.307 kb on - strandat 4751.307 kb on - strandat 4751.307 kb on - strandat 4751.307 kb on - strandat 4751.408 kb on - strandat 4751.438 kb on - strandat 4751.487 kb on + strandat 4751.488 kb on - strandat 4751.488 kb on - strandat 4751.488 kb on - strandat 4751.509 kb on + strandat 4751.531 kb on - strandat 4751.546 kb on - strandat 4751.546 kb on - strandat 4751.546 kb on - strandat 4751.596 kb on + strandat 4751.596 kb on + strandat 4751.596 kb on + strandat 4751.608 kb on - strandat 4751.608 kb on - strandat 4751.640 kb on + strandat 4751.641 kb on - strandat 4751.654 kb on + strandat 4751.654 kb on + strandat 4751.654 kb on + strandat 4751.655 kb on - strandat 4751.655 kb on - strandat 4751.718 kb on + strandat 4751.718 kb on + strandat 4751.718 kb on + strandat 4751.718 kb on + strandat 4751.718 kb on + strandat 4751.718 kb on + strandat 4751.718 kb on + strandat 4751.718 kb on + strandat 4751.719 kb on - strandat 4751.719 kb on - strandat 4751.719 kb on - strandat 4751.719 kb on - strandat 4751.719 kb on - strandat 4751.719 kb on - strandat 4751.808 kb on + strandat 4751.962 kb on + strand, within Psyr_3993at 4752.114 kb on + strand, within Psyr_3993at 4752.115 kb on - strand, within Psyr_3993at 4752.169 kb on + strand, within Psyr_3993at 4752.169 kb on + strand, within Psyr_3993at 4752.169 kb on + strand, within Psyr_3993at 4752.169 kb on + strand, within Psyr_3993at 4752.170 kb on - strand, within Psyr_3993at 4752.170 kb on - strand, within Psyr_3993at 4752.170 kb on - strand, within Psyr_3993at 4752.281 kb on + strand, within Psyr_3993at 4752.281 kb on + strand, within Psyr_3993at 4752.281 kb on + strand, within Psyr_3993at 4752.298 kb on + strand, within Psyr_3993at 4752.299 kb on - strand, within Psyr_3993at 4752.299 kb on - strand, within Psyr_3993at 4752.331 kb on + strand, within Psyr_3993at 4752.331 kb on + strand, within Psyr_3993at 4752.332 kb on - strand, within Psyr_3993at 4752.332 kb on - strand, within Psyr_3993at 4752.332 kb on - strand, within Psyr_3993at 4752.332 kb on - strand, within Psyr_3993at 4752.340 kb on + strand, within Psyr_3993at 4752.341 kb on - strand, within Psyr_3993at 4752.353 kb on - strand, within Psyr_3993at 4752.605 kb on - strand, within Psyr_3993at 4752.694 kb on + strand, within Psyr_3993at 4752.694 kb on + strand, within Psyr_3993at 4752.695 kb on - strand, within Psyr_3993at 4752.763 kb on + strand, within Psyr_3993at 4752.763 kb on + strand, within Psyr_3993at 4752.763 kb on + strand, within Psyr_3993at 4752.764 kb on - strand, within Psyr_3993at 4752.764 kb on - strand, within Psyr_3993at 4752.961 kb on + strand, within Psyr_3993at 4752.961 kb on + strand, within Psyr_3993at 4752.961 kb on + strand, within Psyr_3993at 4752.961 kb on + strand, within Psyr_3993at 4752.961 kb on + strand, within Psyr_3993at 4752.961 kb on + strand, within Psyr_3993at 4752.961 kb on + strand, within Psyr_3993at 4752.961 kb on + strand, within Psyr_3993at 4752.961 kb on + strand, within Psyr_3993at 4752.961 kb on + strand, within Psyr_3993at 4752.961 kb on + strand, within Psyr_3993at 4752.962 kb on - strand, within Psyr_3993at 4752.962 kb on - strand, within Psyr_3993at 4752.962 kb on - strand, within Psyr_3993at 4753.006 kb on + strand, within Psyr_3993at 4753.051 kb on + strand, within Psyr_3993at 4753.051 kb on + strand, within Psyr_3993at 4753.051 kb on + strand, within Psyr_3993at 4753.052 kb on - strand, within Psyr_3993at 4753.052 kb on - strand, within Psyr_3993at 4753.076 kb on + strand, within Psyr_3993at 4753.077 kb on - strand, within Psyr_3993at 4753.077 kb on - strand, within Psyr_3993at 4753.077 kb on - strand, within Psyr_3993at 4753.077 kb on - strand, within Psyr_3993at 4753.385 kb on + strand, within Psyr_3993at 4753.385 kb on + strand, within Psyr_3993at 4753.385 kb on + strand, within Psyr_3993at 4753.386 kb on - strand, within Psyr_3993at 4753.386 kb on - strand, within Psyr_3993at 4753.400 kb on - strand, within Psyr_3993at 4753.459 kb on + strand, within Psyr_3993at 4753.459 kb on + strand, within Psyr_3993at 4753.460 kb on - strand, within Psyr_3993at 4753.460 kb on - strand, within Psyr_3993at 4753.462 kb on + strand, within Psyr_3993at 4753.462 kb on + strand, within Psyr_3993at 4753.462 kb on + strand, within Psyr_3993at 4753.462 kb on + strand, within Psyr_3993at 4753.462 kb on + strand, within Psyr_3993at 4753.462 kb on + strand, within Psyr_3993at 4753.462 kb on + strand, within Psyr_3993at 4753.463 kb on - strand, within Psyr_3993at 4753.463 kb on - strand, within Psyr_3993at 4753.513 kb on + strand, within Psyr_3993at 4753.513 kb on + strand, within Psyr_3993at 4753.514 kb on - strand, within Psyr_3993at 4753.514 kb on - strand, within Psyr_3993at 4753.514 kb on - strand, within Psyr_3993at 4753.514 kb on - strand, within Psyr_3993at 4753.526 kb on - strand, within Psyr_3993at 4753.576 kb on + strand, within Psyr_3993at 4753.576 kb on + strand, within Psyr_3993at 4753.576 kb on + strand, within Psyr_3993at 4753.576 kb on + strand, within Psyr_3993at 4753.576 kb on + strand, within Psyr_3993at 4753.577 kb on - strand, within Psyr_3993at 4753.577 kb on - strand, within Psyr_3993at 4753.577 kb on - strand, within Psyr_3993at 4753.702 kb on + strand, within Psyr_3993at 4753.702 kb on + strand, within Psyr_3993at 4753.702 kb on + strand, within Psyr_3993at 4753.702 kb on + strand, within Psyr_3993at 4753.703 kb on - strand, within Psyr_3993at 4753.703 kb on - strand, within Psyr_3993at 4753.703 kb on - strand, within Psyr_3993at 4753.703 kb on - strand, within Psyr_3993at 4753.703 kb on - strand, within Psyr_3993at 4753.831 kb on + strandat 4753.832 kb on - strandat 4753.832 kb on - strandat 4753.832 kb on - strandat 4753.832 kb on - strandat 4753.832 kb on - strandat 4753.832 kb on - strandat 4753.931 kb on - strandat 4754.038 kb on + strandat 4754.038 kb on + strandat 4754.039 kb on - strandat 4754.152 kb on + strandat 4754.152 kb on + strandat 4754.152 kb on + strandat 4754.152 kb on + strandat 4754.153 kb on - strandat 4754.153 kb on - strandat 4754.153 kb on - strandat 4754.153 kb on - strandat 4754.153 kb on - strandat 4754.153 kb on - strandat 4754.153 kb on - strandat 4754.261 kb on + strand, within Psyr_3994at 4754.261 kb on + strand, within Psyr_3994at 4754.261 kb on + strand, within Psyr_3994at 4754.261 kb on + strand, within Psyr_3994at 4754.261 kb on + strand, within Psyr_3994at 4754.262 kb on - strand, within Psyr_3994at 4754.262 kb on - strand, within Psyr_3994at 4754.262 kb on - strand, within Psyr_3994at 4754.383 kb on + strand, within Psyr_3994at 4754.383 kb on + strand, within Psyr_3994at 4754.383 kb on + strand, within Psyr_3994at 4754.383 kb on + strand, within Psyr_3994at 4754.383 kb on + strand, within Psyr_3994at 4754.383 kb on + strand, within Psyr_3994at 4754.383 kb on + strand, within Psyr_3994at 4754.383 kb on + strand, within Psyr_3994at 4754.384 kb on - strand, within Psyr_3994at 4754.384 kb on - strandat 4754.384 kb on - strand, within Psyr_3994at 4754.384 kb on - strand, within Psyr_3994at 4754.384 kb on - strand, within Psyr_3994at 4754.384 kb on - strand, within Psyr_3994at 4754.384 kb on - strand, within Psyr_3994at 4754.384 kb on - strand, within Psyr_3994at 4754.384 kb on - strand, within Psyr_3994at 4754.384 kb on - strand, within Psyr_3994at 4754.384 kb on - strand, within Psyr_3994at 4754.384 kb on - strand, within Psyr_3994at 4754.384 kb on - strand, within Psyr_3994at 4754.384 kb on - strand, within Psyr_3994at 4754.384 kb on - strand, within Psyr_3994at 4754.384 kb on - strand, within Psyr_3994at 4754.399 kb on - strand, within Psyr_3994at 4754.399 kb on - strand, within Psyr_3994at 4754.399 kb on - strand, within Psyr_3994at 4754.399 kb on - strand, within Psyr_3994at 4754.399 kb on - strand, within Psyr_3994at 4754.399 kb on - strand, within Psyr_3994at 4754.414 kb on - strand, within Psyr_3994at 4754.414 kb on - strand, within Psyr_3994at 4754.414 kb on - strand, within Psyr_3994at 4754.414 kb on - strand, within Psyr_3994at 4754.514 kb on + strand, within Psyr_3994at 4754.726 kb on + strand, within Psyr_3994at 4754.726 kb on + strand, within Psyr_3994at 4754.727 kb on - strand, within Psyr_3994at 4754.727 kb on - strand, within Psyr_3994at 4754.727 kb on - strand, within Psyr_3994at 4754.727 kb on - strand, within Psyr_3994at 4754.815 kb on + strand, within Psyr_3994at 4754.815 kb on + strand, within Psyr_3994at 4754.815 kb on + strand, within Psyr_3994

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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4,750,726 + Psyr_3992 0.15 -1.2
4,750,726 + Psyr_3992 0.15 -0.7
4,750,726 + Psyr_3992 0.15 -0.2
4,750,726 + Psyr_3992 0.15 +2.4
4,750,727 - Psyr_3992 0.15 +2.6
4,750,727 - Psyr_3992 0.15 -0.7
4,750,727 - Psyr_3992 0.15 +0.6
4,750,727 - Psyr_3992 0.15 +1.6
4,750,727 - Psyr_3992 0.15 +0.0
4,750,727 - Psyr_3992 0.15 -1.7
4,750,727 - Psyr_3992 0.15 -3.4
4,750,727 - Psyr_3992 0.15 -0.6
4,750,799 + Psyr_3992 0.25 -0.5
4,750,800 - +1.0
4,750,883 - Psyr_3992 0.37 +0.8
4,751,282 - -1.0
4,751,306 + +1.6
4,751,306 + +3.0
4,751,306 + +3.7
4,751,306 + +0.0
4,751,307 - -1.1
4,751,307 - +0.6
4,751,307 - +2.4
4,751,307 - +1.6
4,751,307 - -1.8
4,751,307 - +2.7
4,751,307 - +0.8
4,751,307 - -2.2
4,751,408 - -1.5
4,751,438 - -1.0
4,751,487 + +4.1
4,751,488 - -1.2
4,751,488 - +4.3
4,751,488 - -1.2
4,751,509 + +0.5
4,751,531 - +3.5
4,751,546 - +2.6
4,751,546 - +1.6
4,751,546 - +2.8
4,751,596 + -1.2
4,751,596 + -0.6
4,751,596 + -1.7
4,751,608 - +3.4
4,751,608 - -1.1
4,751,640 + +2.6
4,751,641 - -2.8
4,751,654 + +1.0
4,751,654 + +2.8
4,751,654 + +2.4
4,751,655 - -0.4
4,751,655 - -2.1
4,751,718 + +0.3
4,751,718 + -3.3
4,751,718 + -3.8
4,751,718 + -2.7
4,751,718 + +1.6
4,751,718 + +0.0
4,751,718 + -2.3
4,751,718 + -2.8
4,751,719 - -2.1
4,751,719 - +3.4
4,751,719 - -3.0
4,751,719 - +1.0
4,751,719 - -1.3
4,751,719 - +0.0
4,751,808 + +3.0
4,751,962 + Psyr_3993 0.13 -1.8
4,752,114 + Psyr_3993 0.20 +1.2
4,752,115 - Psyr_3993 0.20 +0.4
4,752,169 + Psyr_3993 0.22 -1.0
4,752,169 + Psyr_3993 0.22 -3.5
4,752,169 + Psyr_3993 0.22 +2.4
4,752,169 + Psyr_3993 0.22 -0.3
4,752,170 - Psyr_3993 0.22 +4.2
4,752,170 - Psyr_3993 0.22 -0.9
4,752,170 - Psyr_3993 0.22 -2.2
4,752,281 + Psyr_3993 0.27 -1.2
4,752,281 + Psyr_3993 0.27 +0.6
4,752,281 + Psyr_3993 0.27 -3.3
4,752,298 + Psyr_3993 0.28 -2.5
4,752,299 - Psyr_3993 0.28 +1.5
4,752,299 - Psyr_3993 0.28 +0.7
4,752,331 + Psyr_3993 0.29 -1.6
4,752,331 + Psyr_3993 0.29 +3.6
4,752,332 - Psyr_3993 0.29 +2.0
4,752,332 - Psyr_3993 0.29 -1.6
4,752,332 - Psyr_3993 0.29 +0.0
4,752,332 - Psyr_3993 0.29 +0.0
4,752,340 + Psyr_3993 0.30 +4.4
4,752,341 - Psyr_3993 0.30 -1.3
4,752,353 - Psyr_3993 0.30 -1.6
4,752,605 - Psyr_3993 0.41 -1.4
4,752,694 + Psyr_3993 0.45 -1.1
4,752,694 + Psyr_3993 0.45 -0.7
4,752,695 - Psyr_3993 0.45 -1.7
4,752,763 + Psyr_3993 0.48 -0.6
4,752,763 + Psyr_3993 0.48 -1.7
4,752,763 + Psyr_3993 0.48 +0.8
4,752,764 - Psyr_3993 0.48 +5.1
4,752,764 - Psyr_3993 0.48 -1.9
4,752,961 + Psyr_3993 0.57 -1.5
4,752,961 + Psyr_3993 0.57 -1.1
4,752,961 + Psyr_3993 0.57 -2.0
4,752,961 + Psyr_3993 0.57 -1.6
4,752,961 + Psyr_3993 0.57 +0.0
4,752,961 + Psyr_3993 0.57 +0.4
4,752,961 + Psyr_3993 0.57 -1.7
4,752,961 + Psyr_3993 0.57 +4.1
4,752,961 + Psyr_3993 0.57 +0.0
4,752,961 + Psyr_3993 0.57 -0.6
4,752,961 + Psyr_3993 0.57 +4.0
4,752,962 - Psyr_3993 0.57 +2.6
4,752,962 - Psyr_3993 0.57 -0.7
4,752,962 - Psyr_3993 0.57 -1.5
4,753,006 + Psyr_3993 0.59 +0.7
4,753,051 + Psyr_3993 0.61 -2.9
4,753,051 + Psyr_3993 0.61 +3.6
4,753,051 + Psyr_3993 0.61 +1.0
4,753,052 - Psyr_3993 0.61 -2.0
4,753,052 - Psyr_3993 0.61 +4.1
4,753,076 + Psyr_3993 0.62 -1.4
4,753,077 - Psyr_3993 0.62 -0.7
4,753,077 - Psyr_3993 0.62 -1.8
4,753,077 - Psyr_3993 0.62 -0.5
4,753,077 - Psyr_3993 0.62 +0.6
4,753,385 + Psyr_3993 0.76 +4.0
4,753,385 + Psyr_3993 0.76 -0.9
4,753,385 + Psyr_3993 0.76 +0.1
4,753,386 - Psyr_3993 0.76 +1.6
4,753,386 - Psyr_3993 0.76 -0.9
4,753,400 - Psyr_3993 0.76 -0.5
4,753,459 + Psyr_3993 0.79 -1.3
4,753,459 + Psyr_3993 0.79 -0.7
4,753,460 - Psyr_3993 0.79 -0.4
4,753,460 - Psyr_3993 0.79 -0.6
4,753,462 + Psyr_3993 0.79 -1.8
4,753,462 + Psyr_3993 0.79 -1.5
4,753,462 + Psyr_3993 0.79 +1.0
4,753,462 + Psyr_3993 0.79 +3.7
4,753,462 + Psyr_3993 0.79 -5.5
4,753,462 + Psyr_3993 0.79 +3.6
4,753,462 + Psyr_3993 0.79 -1.2
4,753,463 - Psyr_3993 0.79 -0.4
4,753,463 - Psyr_3993 0.79 +0.0
4,753,513 + Psyr_3993 0.81 -1.6
4,753,513 + Psyr_3993 0.81 +4.4
4,753,514 - Psyr_3993 0.81 -2.5
4,753,514 - Psyr_3993 0.81 +0.1
4,753,514 - Psyr_3993 0.81 -1.0
4,753,514 - Psyr_3993 0.81 +3.0
4,753,526 - Psyr_3993 0.82 +2.4
4,753,576 + Psyr_3993 0.84 -1.3
4,753,576 + Psyr_3993 0.84 -1.5
4,753,576 + Psyr_3993 0.84 +0.7
4,753,576 + Psyr_3993 0.84 +0.8
4,753,576 + Psyr_3993 0.84 +0.0
4,753,577 - Psyr_3993 0.84 +0.0
4,753,577 - Psyr_3993 0.84 -1.5
4,753,577 - Psyr_3993 0.84 +2.0
4,753,702 + Psyr_3993 0.90 -1.9
4,753,702 + Psyr_3993 0.90 -1.0
4,753,702 + Psyr_3993 0.90 -1.8
4,753,702 + Psyr_3993 0.90 -0.3
4,753,703 - Psyr_3993 0.90 -1.2
4,753,703 - Psyr_3993 0.90 +0.5
4,753,703 - Psyr_3993 0.90 -1.2
4,753,703 - Psyr_3993 0.90 -2.1
4,753,703 - Psyr_3993 0.90 -0.7
4,753,831 + +1.6
4,753,832 - +2.0
4,753,832 - -1.3
4,753,832 - -0.5
4,753,832 - -0.3
4,753,832 - +0.2
4,753,832 - +1.0
4,753,931 - -1.5
4,754,038 + -0.6
4,754,038 + +0.0
4,754,039 - -1.9
4,754,152 + -1.3
4,754,152 + +2.6
4,754,152 + -0.2
4,754,152 + +0.0
4,754,153 - -0.3
4,754,153 - -4.3
4,754,153 - -2.0
4,754,153 - +3.6
4,754,153 - +4.3
4,754,153 - -0.9
4,754,153 - +3.6
4,754,261 + Psyr_3994 0.15 -0.5
4,754,261 + Psyr_3994 0.15 -2.3
4,754,261 + Psyr_3994 0.15 +3.5
4,754,261 + Psyr_3994 0.15 -1.9
4,754,261 + Psyr_3994 0.15 +0.0
4,754,262 - Psyr_3994 0.15 -0.5
4,754,262 - Psyr_3994 0.15 +3.0
4,754,262 - Psyr_3994 0.15 +1.9
4,754,383 + Psyr_3994 0.22 -1.2
4,754,383 + Psyr_3994 0.22 +2.0
4,754,383 + Psyr_3994 0.22 -2.3
4,754,383 + Psyr_3994 0.22 -0.3
4,754,383 + Psyr_3994 0.22 -0.6
4,754,383 + Psyr_3994 0.22 +0.0
4,754,383 + Psyr_3994 0.22 +0.6
4,754,383 + Psyr_3994 0.22 -0.8
4,754,384 - Psyr_3994 0.22 -2.1
4,754,384 - +1.6
4,754,384 - Psyr_3994 0.22 -1.8
4,754,384 - Psyr_3994 0.22 +0.2
4,754,384 - Psyr_3994 0.22 +4.3
4,754,384 - Psyr_3994 0.22 +0.8
4,754,384 - Psyr_3994 0.22 +1.1
4,754,384 - Psyr_3994 0.22 -1.8
4,754,384 - Psyr_3994 0.22 +4.1
4,754,384 - Psyr_3994 0.22 +4.5
4,754,384 - Psyr_3994 0.22 +0.4
4,754,384 - Psyr_3994 0.22 +2.4
4,754,384 - Psyr_3994 0.22 -0.3
4,754,384 - Psyr_3994 0.22 +1.6
4,754,384 - Psyr_3994 0.22 -2.0
4,754,384 - Psyr_3994 0.22 +0.1
4,754,399 - Psyr_3994 0.23 -2.0
4,754,399 - Psyr_3994 0.23 +2.4
4,754,399 - Psyr_3994 0.23 -1.1
4,754,399 - Psyr_3994 0.23 +1.6
4,754,399 - Psyr_3994 0.23 -0.6
4,754,399 - Psyr_3994 0.23 +0.5
4,754,414 - Psyr_3994 0.23 +1.6
4,754,414 - Psyr_3994 0.23 -1.3
4,754,414 - Psyr_3994 0.23 -1.0
4,754,414 - Psyr_3994 0.23 +0.7
4,754,514 + Psyr_3994 0.29 +0.6
4,754,726 + Psyr_3994 0.41 +0.0
4,754,726 + Psyr_3994 0.41 +0.0
4,754,727 - Psyr_3994 0.41 -1.8
4,754,727 - Psyr_3994 0.41 +3.6
4,754,727 - Psyr_3994 0.41 +3.2
4,754,727 - Psyr_3994 0.41 +0.3
4,754,815 + Psyr_3994 0.46 +0.3
4,754,815 + Psyr_3994 0.46 +2.4
4,754,815 + Psyr_3994 0.46 -2.8

Or see this region's nucleotide sequence