Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3991

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3990 and Psyr_3991 are separated by 59 nucleotidesPsyr_3991 and Psyr_3992 are separated by 25 nucleotides Psyr_3990: Psyr_3990 - conserved hypothetical protein, at 4,748,908 to 4,749,918 _3990 Psyr_3991: Psyr_3991 - Protein of unknown function DUF477, at 4,749,978 to 4,750,595 _3991 Psyr_3992: Psyr_3992 - Protein of unknown function DUF477, at 4,750,621 to 4,751,334 _3992 Position (kb) 4749 4750 4751Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 4748.985 kb on + strandat 4748.986 kb on - strandat 4749.003 kb on + strandat 4749.003 kb on + strandat 4749.003 kb on + strandat 4749.004 kb on - strandat 4749.004 kb on - strandat 4749.004 kb on - strandat 4749.113 kb on + strand, within Psyr_3990at 4749.113 kb on + strand, within Psyr_3990at 4749.113 kb on + strand, within Psyr_3990at 4749.113 kb on + strand, within Psyr_3990at 4749.113 kb on + strand, within Psyr_3990at 4749.114 kb on - strand, within Psyr_3990at 4749.114 kb on - strand, within Psyr_3990at 4749.114 kb on - strand, within Psyr_3990at 4749.114 kb on - strand, within Psyr_3990at 4749.114 kb on - strand, within Psyr_3990at 4749.114 kb on - strand, within Psyr_3990at 4749.114 kb on - strand, within Psyr_3990at 4749.303 kb on + strand, within Psyr_3990at 4749.304 kb on - strand, within Psyr_3990at 4749.315 kb on - strand, within Psyr_3990at 4749.315 kb on - strand, within Psyr_3990at 4749.350 kb on + strand, within Psyr_3990at 4749.350 kb on + strand, within Psyr_3990at 4749.350 kb on + strand, within Psyr_3990at 4749.350 kb on + strand, within Psyr_3990at 4749.350 kb on + strand, within Psyr_3990at 4749.350 kb on + strand, within Psyr_3990at 4749.350 kb on + strand, within Psyr_3990at 4749.350 kb on + strand, within Psyr_3990at 4749.350 kb on + strand, within Psyr_3990at 4749.350 kb on + strand, within Psyr_3990at 4749.350 kb on + strand, within Psyr_3990at 4749.351 kb on - strand, within Psyr_3990at 4749.351 kb on - strand, within Psyr_3990at 4749.351 kb on - strand, within Psyr_3990at 4749.351 kb on - strand, within Psyr_3990at 4749.351 kb on - strand, within Psyr_3990at 4749.351 kb on - strand, within Psyr_3990at 4749.351 kb on - strand, within Psyr_3990at 4749.351 kb on - strand, within Psyr_3990at 4749.351 kb on - strand, within Psyr_3990at 4749.351 kb on - strand, within Psyr_3990at 4749.351 kb on - strand, within Psyr_3990at 4749.447 kb on + strand, within Psyr_3990at 4749.447 kb on + strand, within Psyr_3990at 4749.448 kb on - strand, within Psyr_3990at 4749.457 kb on + strand, within Psyr_3990at 4749.457 kb on + strand, within Psyr_3990at 4749.457 kb on + strand, within Psyr_3990at 4749.466 kb on + strand, within Psyr_3990at 4749.467 kb on - strand, within Psyr_3990at 4749.501 kb on + strand, within Psyr_3990at 4749.502 kb on - strand, within Psyr_3990at 4749.613 kb on + strand, within Psyr_3990at 4749.613 kb on + strand, within Psyr_3990at 4749.613 kb on + strand, within Psyr_3990at 4749.613 kb on + strand, within Psyr_3990at 4749.613 kb on + strand, within Psyr_3990at 4749.613 kb on + strand, within Psyr_3990at 4749.613 kb on + strand, within Psyr_3990at 4749.614 kb on - strand, within Psyr_3990at 4749.614 kb on - strand, within Psyr_3990at 4749.614 kb on - strand, within Psyr_3990at 4749.655 kb on + strand, within Psyr_3990at 4749.656 kb on - strand, within Psyr_3990at 4749.658 kb on - strand, within Psyr_3990at 4749.803 kb on - strand, within Psyr_3990at 4749.803 kb on - strand, within Psyr_3990at 4749.803 kb on - strand, within Psyr_3990at 4749.803 kb on - strand, within Psyr_3990at 4749.803 kb on - strand, within Psyr_3990at 4749.880 kb on + strandat 4749.880 kb on + strandat 4749.880 kb on + strandat 4749.881 kb on - strandat 4749.881 kb on - strandat 4749.884 kb on + strandat 4749.885 kb on - strandat 4749.885 kb on - strandat 4749.885 kb on - strandat 4749.885 kb on - strandat 4749.885 kb on - strandat 4749.885 kb on - strandat 4749.885 kb on - strandat 4749.895 kb on + strandat 4749.895 kb on + strandat 4749.934 kb on + strandat 4749.934 kb on + strandat 4749.934 kb on + strandat 4749.934 kb on + strandat 4749.935 kb on - strandat 4749.935 kb on - strandat 4749.935 kb on - strandat 4749.936 kb on + strandat 4749.936 kb on + strandat 4749.936 kb on + strandat 4749.936 kb on + strandat 4749.936 kb on + strandat 4749.936 kb on + strandat 4749.937 kb on - strandat 4749.937 kb on - strandat 4749.937 kb on - strandat 4749.937 kb on - strandat 4750.032 kb on + strandat 4750.032 kb on + strandat 4750.032 kb on + strandat 4750.032 kb on + strandat 4750.032 kb on + strandat 4750.032 kb on + strandat 4750.032 kb on + strandat 4750.032 kb on + strandat 4750.032 kb on + strandat 4750.032 kb on + strandat 4750.033 kb on - strandat 4750.033 kb on - strandat 4750.033 kb on - strandat 4750.033 kb on - strandat 4750.067 kb on + strand, within Psyr_3991at 4750.068 kb on - strand, within Psyr_3991at 4750.068 kb on - strand, within Psyr_3991at 4750.068 kb on - strand, within Psyr_3991at 4750.192 kb on + strand, within Psyr_3991at 4750.192 kb on + strand, within Psyr_3991at 4750.192 kb on + strand, within Psyr_3991at 4750.193 kb on - strand, within Psyr_3991at 4750.193 kb on - strand, within Psyr_3991at 4750.361 kb on + strand, within Psyr_3991at 4750.362 kb on - strand, within Psyr_3991at 4750.370 kb on + strand, within Psyr_3991at 4750.370 kb on + strand, within Psyr_3991at 4750.371 kb on - strand, within Psyr_3991at 4750.371 kb on - strand, within Psyr_3991at 4750.420 kb on + strand, within Psyr_3991at 4750.420 kb on + strand, within Psyr_3991at 4750.421 kb on - strand, within Psyr_3991at 4750.421 kb on - strand, within Psyr_3991at 4750.421 kb on - strand, within Psyr_3991at 4750.421 kb on - strand, within Psyr_3991at 4750.421 kb on - strand, within Psyr_3991at 4750.421 kb on - strand, within Psyr_3991at 4750.477 kb on + strand, within Psyr_3991at 4750.477 kb on + strand, within Psyr_3991at 4750.477 kb on + strand, within Psyr_3991at 4750.477 kb on + strand, within Psyr_3991at 4750.477 kb on + strand, within Psyr_3991at 4750.477 kb on + strand, within Psyr_3991at 4750.477 kb on + strand, within Psyr_3991at 4750.477 kb on + strand, within Psyr_3991at 4750.477 kb on + strand, within Psyr_3991at 4750.477 kb on + strand, within Psyr_3991at 4750.478 kb on - strand, within Psyr_3991at 4750.478 kb on - strand, within Psyr_3991at 4750.478 kb on - strand, within Psyr_3991at 4750.478 kb on - strand, within Psyr_3991at 4750.478 kb on - strand, within Psyr_3991at 4750.478 kb on - strand, within Psyr_3991at 4750.478 kb on - strand, within Psyr_3991at 4750.483 kb on + strand, within Psyr_3991at 4750.483 kb on + strand, within Psyr_3991at 4750.483 kb on + strand, within Psyr_3991at 4750.483 kb on + strand, within Psyr_3991at 4750.484 kb on - strand, within Psyr_3991at 4750.484 kb on - strand, within Psyr_3991at 4750.484 kb on - strand, within Psyr_3991at 4750.588 kb on - strandat 4750.726 kb on + strand, within Psyr_3992at 4750.726 kb on + strand, within Psyr_3992at 4750.726 kb on + strand, within Psyr_3992at 4750.726 kb on + strand, within Psyr_3992at 4750.727 kb on - strand, within Psyr_3992at 4750.727 kb on - strand, within Psyr_3992at 4750.727 kb on - strand, within Psyr_3992at 4750.727 kb on - strand, within Psyr_3992at 4750.727 kb on - strand, within Psyr_3992at 4750.727 kb on - strand, within Psyr_3992at 4750.727 kb on - strand, within Psyr_3992at 4750.727 kb on - strand, within Psyr_3992at 4750.799 kb on + strand, within Psyr_3992at 4750.800 kb on - strandat 4750.883 kb on - strand, within Psyr_3992at 4751.282 kb on - strandat 4751.306 kb on + strandat 4751.306 kb on + strandat 4751.306 kb on + strandat 4751.306 kb on + strandat 4751.307 kb on - strandat 4751.307 kb on - strandat 4751.307 kb on - strandat 4751.307 kb on - strandat 4751.307 kb on - strandat 4751.307 kb on - strandat 4751.307 kb on - strandat 4751.307 kb on - strandat 4751.408 kb on - strandat 4751.438 kb on - strandat 4751.487 kb on + strandat 4751.488 kb on - strandat 4751.488 kb on - strandat 4751.488 kb on - strandat 4751.509 kb on + strandat 4751.531 kb on - strandat 4751.546 kb on - strandat 4751.546 kb on - strandat 4751.546 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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4,748,985 + +3.2
4,748,986 - +2.4
4,749,003 + +2.6
4,749,003 + +0.1
4,749,003 + +0.9
4,749,004 - +2.4
4,749,004 - +3.4
4,749,004 - +4.7
4,749,113 + Psyr_3990 0.20 -3.3
4,749,113 + Psyr_3990 0.20 -1.0
4,749,113 + Psyr_3990 0.20 +0.0
4,749,113 + Psyr_3990 0.20 -0.5
4,749,113 + Psyr_3990 0.20 -3.6
4,749,114 - Psyr_3990 0.20 -1.4
4,749,114 - Psyr_3990 0.20 -2.7
4,749,114 - Psyr_3990 0.20 -2.3
4,749,114 - Psyr_3990 0.20 +2.0
4,749,114 - Psyr_3990 0.20 +0.0
4,749,114 - Psyr_3990 0.20 +2.4
4,749,114 - Psyr_3990 0.20 -2.7
4,749,303 + Psyr_3990 0.39 -2.5
4,749,304 - Psyr_3990 0.39 -4.9
4,749,315 - Psyr_3990 0.40 +0.1
4,749,315 - Psyr_3990 0.40 -1.1
4,749,350 + Psyr_3990 0.44 -0.6
4,749,350 + Psyr_3990 0.44 -2.6
4,749,350 + Psyr_3990 0.44 +0.0
4,749,350 + Psyr_3990 0.44 +3.2
4,749,350 + Psyr_3990 0.44 +3.0
4,749,350 + Psyr_3990 0.44 +2.0
4,749,350 + Psyr_3990 0.44 -0.3
4,749,350 + Psyr_3990 0.44 +3.0
4,749,350 + Psyr_3990 0.44 +2.4
4,749,350 + Psyr_3990 0.44 +0.0
4,749,350 + Psyr_3990 0.44 -1.5
4,749,351 - Psyr_3990 0.44 -2.5
4,749,351 - Psyr_3990 0.44 +2.6
4,749,351 - Psyr_3990 0.44 -4.0
4,749,351 - Psyr_3990 0.44 +0.0
4,749,351 - Psyr_3990 0.44 +1.0
4,749,351 - Psyr_3990 0.44 -0.4
4,749,351 - Psyr_3990 0.44 +4.1
4,749,351 - Psyr_3990 0.44 +1.0
4,749,351 - Psyr_3990 0.44 +1.0
4,749,351 - Psyr_3990 0.44 -2.0
4,749,351 - Psyr_3990 0.44 +3.2
4,749,447 + Psyr_3990 0.53 +3.4
4,749,447 + Psyr_3990 0.53 -0.8
4,749,448 - Psyr_3990 0.53 -0.0
4,749,457 + Psyr_3990 0.54 -0.4
4,749,457 + Psyr_3990 0.54 +2.0
4,749,457 + Psyr_3990 0.54 -0.6
4,749,466 + Psyr_3990 0.55 -3.8
4,749,467 - Psyr_3990 0.55 +0.0
4,749,501 + Psyr_3990 0.59 +1.6
4,749,502 - Psyr_3990 0.59 +0.3
4,749,613 + Psyr_3990 0.70 +4.4
4,749,613 + Psyr_3990 0.70 -0.5
4,749,613 + Psyr_3990 0.70 -4.0
4,749,613 + Psyr_3990 0.70 +0.5
4,749,613 + Psyr_3990 0.70 -0.1
4,749,613 + Psyr_3990 0.70 -2.4
4,749,613 + Psyr_3990 0.70 -0.8
4,749,614 - Psyr_3990 0.70 +2.6
4,749,614 - Psyr_3990 0.70 -1.2
4,749,614 - Psyr_3990 0.70 -0.4
4,749,655 + Psyr_3990 0.74 -1.6
4,749,656 - Psyr_3990 0.74 -2.8
4,749,658 - Psyr_3990 0.74 -1.6
4,749,803 - Psyr_3990 0.89 +1.4
4,749,803 - Psyr_3990 0.89 +2.6
4,749,803 - Psyr_3990 0.89 +1.6
4,749,803 - Psyr_3990 0.89 -2.0
4,749,803 - Psyr_3990 0.89 +2.2
4,749,880 + -0.2
4,749,880 + -1.4
4,749,880 + -0.8
4,749,881 - -0.3
4,749,881 - -1.0
4,749,884 + -0.8
4,749,885 - -1.1
4,749,885 - +3.5
4,749,885 - -0.5
4,749,885 - -1.5
4,749,885 - +1.0
4,749,885 - +2.0
4,749,885 - +4.1
4,749,895 + -2.4
4,749,895 + +0.4
4,749,934 + -2.0
4,749,934 + +1.6
4,749,934 + +0.0
4,749,934 + +3.6
4,749,935 - -1.1
4,749,935 - +0.0
4,749,935 - -0.7
4,749,936 + -0.2
4,749,936 + -1.4
4,749,936 + -0.2
4,749,936 + -1.3
4,749,936 + +0.9
4,749,936 + +2.0
4,749,937 - +3.4
4,749,937 - +3.2
4,749,937 - +3.4
4,749,937 - -1.4
4,750,032 + -0.5
4,750,032 + -1.7
4,750,032 + +2.4
4,750,032 + -0.1
4,750,032 + +2.9
4,750,032 + +0.0
4,750,032 + +3.6
4,750,032 + -0.6
4,750,032 + -0.8
4,750,032 + -0.2
4,750,033 - -1.1
4,750,033 - -3.8
4,750,033 - -3.8
4,750,033 - +2.0
4,750,067 + Psyr_3991 0.14 -0.1
4,750,068 - Psyr_3991 0.15 +0.5
4,750,068 - Psyr_3991 0.15 +4.4
4,750,068 - Psyr_3991 0.15 +2.6
4,750,192 + Psyr_3991 0.35 -1.6
4,750,192 + Psyr_3991 0.35 +2.9
4,750,192 + Psyr_3991 0.35 +1.0
4,750,193 - Psyr_3991 0.35 +0.3
4,750,193 - Psyr_3991 0.35 +0.4
4,750,361 + Psyr_3991 0.62 +1.0
4,750,362 - Psyr_3991 0.62 +2.4
4,750,370 + Psyr_3991 0.63 -2.1
4,750,370 + Psyr_3991 0.63 +0.6
4,750,371 - Psyr_3991 0.64 -0.0
4,750,371 - Psyr_3991 0.64 -2.5
4,750,420 + Psyr_3991 0.72 +2.0
4,750,420 + Psyr_3991 0.72 -2.8
4,750,421 - Psyr_3991 0.72 -1.0
4,750,421 - Psyr_3991 0.72 +1.0
4,750,421 - Psyr_3991 0.72 +0.0
4,750,421 - Psyr_3991 0.72 +0.6
4,750,421 - Psyr_3991 0.72 +0.9
4,750,421 - Psyr_3991 0.72 -0.7
4,750,477 + Psyr_3991 0.81 +2.4
4,750,477 + Psyr_3991 0.81 -0.5
4,750,477 + Psyr_3991 0.81 +2.0
4,750,477 + Psyr_3991 0.81 +1.2
4,750,477 + Psyr_3991 0.81 +3.4
4,750,477 + Psyr_3991 0.81 +1.0
4,750,477 + Psyr_3991 0.81 +2.4
4,750,477 + Psyr_3991 0.81 -0.4
4,750,477 + Psyr_3991 0.81 -0.7
4,750,477 + Psyr_3991 0.81 +0.0
4,750,478 - Psyr_3991 0.81 -1.0
4,750,478 - Psyr_3991 0.81 -3.4
4,750,478 - Psyr_3991 0.81 -0.8
4,750,478 - Psyr_3991 0.81 +4.4
4,750,478 - Psyr_3991 0.81 +0.6
4,750,478 - Psyr_3991 0.81 +1.0
4,750,478 - Psyr_3991 0.81 +4.4
4,750,483 + Psyr_3991 0.82 -0.7
4,750,483 + Psyr_3991 0.82 +1.4
4,750,483 + Psyr_3991 0.82 -1.5
4,750,483 + Psyr_3991 0.82 +0.6
4,750,484 - Psyr_3991 0.82 -0.3
4,750,484 - Psyr_3991 0.82 +0.9
4,750,484 - Psyr_3991 0.82 -1.6
4,750,588 - +3.4
4,750,726 + Psyr_3992 0.15 -1.2
4,750,726 + Psyr_3992 0.15 -0.7
4,750,726 + Psyr_3992 0.15 -0.2
4,750,726 + Psyr_3992 0.15 +2.4
4,750,727 - Psyr_3992 0.15 +2.6
4,750,727 - Psyr_3992 0.15 -0.7
4,750,727 - Psyr_3992 0.15 +0.6
4,750,727 - Psyr_3992 0.15 +1.6
4,750,727 - Psyr_3992 0.15 +0.0
4,750,727 - Psyr_3992 0.15 -1.7
4,750,727 - Psyr_3992 0.15 -3.4
4,750,727 - Psyr_3992 0.15 -0.6
4,750,799 + Psyr_3992 0.25 -0.5
4,750,800 - +1.0
4,750,883 - Psyr_3992 0.37 +0.8
4,751,282 - -1.0
4,751,306 + +1.6
4,751,306 + +3.0
4,751,306 + +3.7
4,751,306 + +0.0
4,751,307 - -1.1
4,751,307 - +0.6
4,751,307 - +2.4
4,751,307 - +1.6
4,751,307 - -1.8
4,751,307 - +2.7
4,751,307 - +0.8
4,751,307 - -2.2
4,751,408 - -1.5
4,751,438 - -1.0
4,751,487 + +4.1
4,751,488 - -1.2
4,751,488 - +4.3
4,751,488 - -1.2
4,751,509 + +0.5
4,751,531 - +3.5
4,751,546 - +2.6
4,751,546 - +1.6
4,751,546 - +2.8

Or see this region's nucleotide sequence