Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3955

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_3954 and Psyr_3955 are separated by 171 nucleotidesPsyr_3955 and Psyr_3956 are separated by 284 nucleotides Psyr_3954: Psyr_3954 - GTP-binding protein LepA, at 4,700,728 to 4,702,524 _3954 Psyr_3955: Psyr_3955 - Peptidase S1, chymotrypsin:PDZ/DHR/GLGF, at 4,702,696 to 4,704,141 _3955 Psyr_3956: Psyr_3956 - sigma E regulatory protein, MucB/RseB, at 4,704,426 to 4,705,385 _3956 Position (kb) 4702 4703 4704 4705Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3 4 5at 4701.909 kb on - strand, within Psyr_3954at 4702.167 kb on - strand, within Psyr_3954at 4702.260 kb on - strand, within Psyr_3954at 4702.329 kb on - strand, within Psyr_3954at 4702.332 kb on - strand, within Psyr_3954at 4702.584 kb on - strandat 4702.593 kb on - strandat 4702.593 kb on - strandat 4702.612 kb on + strandat 4702.613 kb on - strandat 4702.710 kb on + strandat 4702.710 kb on + strandat 4703.516 kb on + strand, within Psyr_3955at 4703.516 kb on + strand, within Psyr_3955at 4703.516 kb on + strand, within Psyr_3955at 4703.516 kb on + strand, within Psyr_3955at 4703.516 kb on + strand, within Psyr_3955at 4703.516 kb on + strand, within Psyr_3955at 4703.516 kb on + strand, within Psyr_3955at 4703.517 kb on - strand, within Psyr_3955at 4703.517 kb on - strand, within Psyr_3955at 4703.517 kb on - strand, within Psyr_3955at 4703.517 kb on - strand, within Psyr_3955at 4703.517 kb on - strand, within Psyr_3955at 4703.517 kb on - strand, within Psyr_3955at 4703.517 kb on - strand, within Psyr_3955at 4703.517 kb on - strand, within Psyr_3955at 4703.749 kb on + strand, within Psyr_3955at 4703.749 kb on + strand, within Psyr_3955at 4703.776 kb on + strand, within Psyr_3955at 4703.776 kb on + strand, within Psyr_3955at 4703.777 kb on - strand, within Psyr_3955at 4703.777 kb on - strand, within Psyr_3955at 4703.777 kb on - strand, within Psyr_3955at 4704.141 kb on + strandat 4704.141 kb on + strandat 4704.141 kb on + strandat 4704.141 kb on + strandat 4704.141 kb on + strandat 4704.141 kb on + strandat 4704.141 kb on + strandat 4704.142 kb on - strandat 4704.142 kb on - strandat 4704.142 kb on - strandat 4704.142 kb on - strandat 4704.142 kb on - strandat 4704.142 kb on - strandat 4704.142 kb on - strandat 4704.142 kb on - strandat 4704.281 kb on + strandat 4704.281 kb on + strandat 4704.281 kb on + strandat 4704.282 kb on - strandat 4704.282 kb on - strandat 4704.283 kb on + strandat 4704.283 kb on + strandat 4704.284 kb on - strandat 4704.427 kb on + strandat 4704.427 kb on + strandat 4704.427 kb on + strandat 4704.427 kb on + strandat 4704.428 kb on - strandat 4704.431 kb on + strandat 4704.431 kb on + strandat 4704.432 kb on - strandat 4704.468 kb on + strandat 4704.567 kb on + strand, within Psyr_3956at 4704.568 kb on - strand, within Psyr_3956at 4704.568 kb on - strand, within Psyr_3956at 4704.646 kb on + strand, within Psyr_3956at 4704.646 kb on + strand, within Psyr_3956at 4704.646 kb on + strand, within Psyr_3956at 4704.646 kb on + strand, within Psyr_3956at 4704.646 kb on + strand, within Psyr_3956at 4704.646 kb on + strand, within Psyr_3956at 4704.646 kb on + strand, within Psyr_3956at 4704.646 kb on + strand, within Psyr_3956at 4704.647 kb on - strand, within Psyr_3956at 4704.647 kb on - strand, within Psyr_3956at 4704.647 kb on - strand, within Psyr_3956at 4704.647 kb on - strand, within Psyr_3956at 4704.647 kb on - strand, within Psyr_3956at 4704.647 kb on - strand, within Psyr_3956at 4704.983 kb on + strand, within Psyr_3956at 4704.983 kb on + strand, within Psyr_3956at 4704.984 kb on - strand, within Psyr_3956

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
remove
4,701,909 - Psyr_3954 0.66 +0.0
4,702,167 - Psyr_3954 0.80 -2.6
4,702,260 - Psyr_3954 0.85 -4.2
4,702,329 - Psyr_3954 0.89 -4.9
4,702,332 - Psyr_3954 0.89 -2.0
4,702,584 - -2.1
4,702,593 - +1.6
4,702,593 - -1.4
4,702,612 + -1.1
4,702,613 - +3.7
4,702,710 + +1.4
4,702,710 + +3.2
4,703,516 + Psyr_3955 0.57 +0.0
4,703,516 + Psyr_3955 0.57 +2.0
4,703,516 + Psyr_3955 0.57 +2.8
4,703,516 + Psyr_3955 0.57 +1.6
4,703,516 + Psyr_3955 0.57 +0.0
4,703,516 + Psyr_3955 0.57 -0.9
4,703,516 + Psyr_3955 0.57 -2.1
4,703,517 - Psyr_3955 0.57 -1.6
4,703,517 - Psyr_3955 0.57 -1.8
4,703,517 - Psyr_3955 0.57 +1.6
4,703,517 - Psyr_3955 0.57 -1.0
4,703,517 - Psyr_3955 0.57 -1.6
4,703,517 - Psyr_3955 0.57 +3.5
4,703,517 - Psyr_3955 0.57 +0.0
4,703,517 - Psyr_3955 0.57 +1.0
4,703,749 + Psyr_3955 0.73 -1.4
4,703,749 + Psyr_3955 0.73 -0.6
4,703,776 + Psyr_3955 0.75 -1.6
4,703,776 + Psyr_3955 0.75 -2.8
4,703,777 - Psyr_3955 0.75 +0.0
4,703,777 - Psyr_3955 0.75 -2.5
4,703,777 - Psyr_3955 0.75 -4.5
4,704,141 + -3.8
4,704,141 + -2.6
4,704,141 + +3.6
4,704,141 + -2.1
4,704,141 + -5.5
4,704,141 + -2.3
4,704,141 + -1.9
4,704,142 - -1.4
4,704,142 - -0.8
4,704,142 - +2.8
4,704,142 - -3.1
4,704,142 - +1.6
4,704,142 - +1.0
4,704,142 - +3.2
4,704,142 - +4.8
4,704,281 + +0.0
4,704,281 + -2.7
4,704,281 + +2.6
4,704,282 - -1.8
4,704,282 - -1.1
4,704,283 + +1.6
4,704,283 + +2.8
4,704,284 - -0.4
4,704,427 + -1.3
4,704,427 + -0.5
4,704,427 + +1.4
4,704,427 + +2.0
4,704,428 - +1.5
4,704,431 + +1.1
4,704,431 + +2.0
4,704,432 - +2.6
4,704,468 + -0.5
4,704,567 + Psyr_3956 0.15 +4.6
4,704,568 - Psyr_3956 0.15 -1.6
4,704,568 - Psyr_3956 0.15 +2.6
4,704,646 + Psyr_3956 0.23 +1.0
4,704,646 + Psyr_3956 0.23 +1.6
4,704,646 + Psyr_3956 0.23 +3.5
4,704,646 + Psyr_3956 0.23 +1.4
4,704,646 + Psyr_3956 0.23 -2.9
4,704,646 + Psyr_3956 0.23 -2.9
4,704,646 + Psyr_3956 0.23 +0.0
4,704,646 + Psyr_3956 0.23 -0.1
4,704,647 - Psyr_3956 0.23 -1.0
4,704,647 - Psyr_3956 0.23 -0.7
4,704,647 - Psyr_3956 0.23 +2.4
4,704,647 - Psyr_3956 0.23 -0.8
4,704,647 - Psyr_3956 0.23 +1.6
4,704,647 - Psyr_3956 0.23 +0.9
4,704,983 + Psyr_3956 0.58 -5.9
4,704,983 + Psyr_3956 0.58 -1.6
4,704,984 - Psyr_3956 0.58 +0.7

Or see this region's nucleotide sequence