Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3917 and Psyr_3918 are separated by 40 nucleotides Psyr_3918 and Psyr_3919 overlap by 4 nucleotides Psyr_3919 and Psyr_3920 are separated by 151 nucleotides Psyr_3920 and Psyr_3921 are separated by 294 nucleotides
Psyr_3917: Psyr_3917 - transcriptional regulator, LysR family, at 4,660,539 to 4,661,456
_3917
Psyr_3918: Psyr_3918 - NUDIX hydrolase, at 4,661,497 to 4,661,907
_3918
Psyr_3919: Psyr_3919 - D-alanine--D-alanine ligase, at 4,661,904 to 4,662,995
_3919
Psyr_3920: Psyr_3920 - LSU ribosomal protein L31P, at 4,663,147 to 4,663,428
_3920
Psyr_3921: Psyr_3921 - membrane protein, putative, at 4,663,723 to 4,664,853
_3921
Position (kb) 4661
4662
4663 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 4661.010 kb on + strand, within Psyr_3917 at 4661.010 kb on + strand, within Psyr_3917 at 4661.010 kb on + strand, within Psyr_3917 at 4661.010 kb on + strand, within Psyr_3917 at 4661.010 kb on + strand, within Psyr_3917 at 4661.010 kb on + strand, within Psyr_3917 at 4661.010 kb on + strand, within Psyr_3917 at 4661.010 kb on + strand, within Psyr_3917 at 4661.011 kb on - strand, within Psyr_3917 at 4661.011 kb on - strand, within Psyr_3917 at 4661.011 kb on - strand, within Psyr_3917 at 4661.011 kb on - strand, within Psyr_3917 at 4661.011 kb on - strand, within Psyr_3917 at 4661.011 kb on - strand, within Psyr_3917 at 4661.011 kb on - strand, within Psyr_3917 at 4661.011 kb on - strand, within Psyr_3917 at 4661.011 kb on - strand, within Psyr_3917 at 4661.011 kb on - strand, within Psyr_3917 at 4661.011 kb on - strand, within Psyr_3917 at 4661.011 kb on - strand, within Psyr_3917 at 4661.011 kb on - strand, within Psyr_3917 at 4661.011 kb on - strand, within Psyr_3917 at 4661.011 kb on - strand, within Psyr_3917 at 4661.024 kb on + strand, within Psyr_3917 at 4661.024 kb on + strand, within Psyr_3917 at 4661.025 kb on - strand, within Psyr_3917 at 4661.025 kb on - strand, within Psyr_3917 at 4661.028 kb on + strand, within Psyr_3917 at 4661.028 kb on + strand, within Psyr_3917 at 4661.028 kb on + strand, within Psyr_3917 at 4661.028 kb on + strand, within Psyr_3917 at 4661.028 kb on + strand, within Psyr_3917 at 4661.028 kb on + strand, within Psyr_3917 at 4661.028 kb on + strand, within Psyr_3917 at 4661.029 kb on - strand, within Psyr_3917 at 4661.029 kb on - strand, within Psyr_3917 at 4661.029 kb on - strand, within Psyr_3917 at 4661.029 kb on - strand, within Psyr_3917 at 4661.029 kb on - strand, within Psyr_3917 at 4661.029 kb on - strand, within Psyr_3917 at 4661.079 kb on + strand, within Psyr_3917 at 4661.079 kb on + strand, within Psyr_3917 at 4661.080 kb on - strand, within Psyr_3917 at 4661.122 kb on - strand, within Psyr_3917 at 4661.194 kb on + strand, within Psyr_3917 at 4661.194 kb on + strand, within Psyr_3917 at 4661.194 kb on + strand, within Psyr_3917 at 4661.195 kb on - strand, within Psyr_3917 at 4661.283 kb on + strand, within Psyr_3917 at 4661.283 kb on + strand, within Psyr_3917 at 4661.284 kb on - strand, within Psyr_3917 at 4661.298 kb on + strand, within Psyr_3917 at 4661.346 kb on + strand, within Psyr_3917 at 4661.346 kb on + strand, within Psyr_3917 at 4661.347 kb on - strand, within Psyr_3917 at 4661.347 kb on - strand, within Psyr_3917 at 4661.347 kb on - strand, within Psyr_3917 at 4661.382 kb on + strand at 4661.382 kb on + strand at 4661.382 kb on + strand at 4661.382 kb on + strand at 4661.382 kb on + strand at 4661.382 kb on + strand at 4661.382 kb on + strand at 4661.382 kb on + strand at 4661.382 kb on + strand at 4661.383 kb on - strand at 4661.383 kb on - strand at 4661.383 kb on - strand at 4661.383 kb on - strand at 4661.383 kb on - strand at 4661.383 kb on - strand at 4661.440 kb on + strand at 4661.440 kb on + strand at 4661.441 kb on - strand at 4661.441 kb on - strand at 4661.502 kb on + strand at 4661.503 kb on - strand at 4661.525 kb on + strand at 4661.526 kb on - strand at 4661.526 kb on - strand at 4661.651 kb on + strand, within Psyr_3918 at 4661.651 kb on + strand, within Psyr_3918 at 4661.651 kb on + strand, within Psyr_3918 at 4661.652 kb on - strand, within Psyr_3918 at 4661.652 kb on - strand, within Psyr_3918 at 4661.652 kb on - strand, within Psyr_3918 at 4661.652 kb on - strand, within Psyr_3918 at 4661.652 kb on - strand, within Psyr_3918 at 4661.652 kb on - strand, within Psyr_3918 at 4661.652 kb on - strand, within Psyr_3918 at 4661.652 kb on - strand, within Psyr_3918 at 4661.989 kb on + strand at 4661.990 kb on - strand at 4661.990 kb on - strand at 4662.022 kb on + strand, within Psyr_3919 at 4662.022 kb on + strand, within Psyr_3919 at 4662.023 kb on - strand, within Psyr_3919 at 4662.136 kb on + strand, within Psyr_3919 at 4662.136 kb on + strand, within Psyr_3919 at 4662.136 kb on + strand, within Psyr_3919 at 4662.136 kb on + strand, within Psyr_3919 at 4662.137 kb on - strand, within Psyr_3919 at 4662.137 kb on - strand, within Psyr_3919 at 4662.226 kb on + strand, within Psyr_3919 at 4662.227 kb on - strand, within Psyr_3919 at 4662.227 kb on - strand, within Psyr_3919 at 4662.244 kb on + strand, within Psyr_3919 at 4662.244 kb on + strand, within Psyr_3919 at 4662.244 kb on + strand, within Psyr_3919 at 4662.245 kb on - strand, within Psyr_3919 at 4662.245 kb on - strand, within Psyr_3919 at 4662.693 kb on + strand, within Psyr_3919 at 4662.694 kb on - strand, within Psyr_3919 at 4662.792 kb on + strand, within Psyr_3919 at 4662.792 kb on + strand, within Psyr_3919 at 4662.792 kb on + strand, within Psyr_3919 at 4662.793 kb on - strand, within Psyr_3919 at 4662.793 kb on - strand, within Psyr_3919 at 4662.793 kb on - strand, within Psyr_3919 at 4662.829 kb on + strand, within Psyr_3919 at 4662.830 kb on - strand, within Psyr_3919 at 4662.893 kb on - strand at 4663.003 kb on - strand at 4663.028 kb on + strand at 4663.047 kb on + strand at 4663.047 kb on + strand at 4663.048 kb on - strand at 4663.055 kb on + strand at 4663.056 kb on - strand at 4663.056 kb on - strand at 4663.256 kb on + strand, within Psyr_3920 at 4663.256 kb on + strand, within Psyr_3920 at 4663.256 kb on + strand, within Psyr_3920 at 4663.256 kb on + strand, within Psyr_3920 at 4663.256 kb on + strand, within Psyr_3920 at 4663.257 kb on - strand, within Psyr_3920 at 4663.257 kb on - strand, within Psyr_3920 at 4663.257 kb on - strand, within Psyr_3920 at 4663.295 kb on + strand, within Psyr_3920 at 4663.295 kb on + strand, within Psyr_3920 at 4663.295 kb on + strand, within Psyr_3920 at 4663.296 kb on - strand, within Psyr_3920 at 4663.296 kb on - strand, within Psyr_3920 at 4663.296 kb on - strand, within Psyr_3920 at 4663.301 kb on + strand, within Psyr_3920 at 4663.301 kb on + strand, within Psyr_3920 at 4663.301 kb on + strand, within Psyr_3920 at 4663.301 kb on + strand, within Psyr_3920 at 4663.301 kb on + strand, within Psyr_3920 at 4663.301 kb on + strand, within Psyr_3920 at 4663.301 kb on + strand, within Psyr_3920 at 4663.302 kb on - strand, within Psyr_3920 at 4663.302 kb on - strand, within Psyr_3920 at 4663.305 kb on + strand, within Psyr_3920 at 4663.305 kb on + strand, within Psyr_3920 at 4663.342 kb on + strand, within Psyr_3920 at 4663.457 kb on + strand at 4663.458 kb on - strand at 4663.461 kb on + strand at 4663.462 kb on - strand at 4663.463 kb on + strand at 4663.555 kb on - strand at 4663.590 kb on + strand at 4663.591 kb on - strand at 4663.591 kb on - strand at 4663.593 kb on + strand at 4663.594 kb on - strand at 4663.594 kb on - strand at 4663.686 kb on + strand at 4663.687 kb on - strand at 4663.693 kb on - strand at 4663.693 kb on - strand at 4663.693 kb on - strand at 4663.728 kb on + strand at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.980 kb on + strand, within Psyr_3921 at 4663.980 kb on + strand, within Psyr_3921 at 4663.980 kb on + strand, within Psyr_3921 at 4663.981 kb on - strand, within Psyr_3921 at 4663.981 kb on - strand, within Psyr_3921 at 4663.981 kb on - strand, within Psyr_3921 at 4663.981 kb on - strand, within Psyr_3921 at 4663.981 kb on - strand, within Psyr_3921 at 4663.981 kb on - strand, within Psyr_3921
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 4,661,010 + Psyr_3917 0.51 +0.3 4,661,010 + Psyr_3917 0.51 -0.1 4,661,010 + Psyr_3917 0.51 -2.9 4,661,010 + Psyr_3917 0.51 -0.2 4,661,010 + Psyr_3917 0.51 -0.5 4,661,010 + Psyr_3917 0.51 -1.7 4,661,010 + Psyr_3917 0.51 +2.6 4,661,010 + Psyr_3917 0.51 +3.7 4,661,011 - Psyr_3917 0.51 +0.5 4,661,011 - Psyr_3917 0.51 +4.1 4,661,011 - Psyr_3917 0.51 +0.6 4,661,011 - Psyr_3917 0.51 +0.7 4,661,011 - Psyr_3917 0.51 -0.7 4,661,011 - Psyr_3917 0.51 +2.1 4,661,011 - Psyr_3917 0.51 -0.6 4,661,011 - Psyr_3917 0.51 +3.3 4,661,011 - Psyr_3917 0.51 +3.5 4,661,011 - Psyr_3917 0.51 +2.8 4,661,011 - Psyr_3917 0.51 -1.6 4,661,011 - Psyr_3917 0.51 +2.8 4,661,011 - Psyr_3917 0.51 +3.3 4,661,011 - Psyr_3917 0.51 +2.3 4,661,011 - Psyr_3917 0.51 +1.5 4,661,024 + Psyr_3917 0.53 -1.8 4,661,024 + Psyr_3917 0.53 +1.0 4,661,025 - Psyr_3917 0.53 +1.2 4,661,025 - Psyr_3917 0.53 -2.1 4,661,028 + Psyr_3917 0.53 +3.2 4,661,028 + Psyr_3917 0.53 -0.9 4,661,028 + Psyr_3917 0.53 -2.8 4,661,028 + Psyr_3917 0.53 +2.0 4,661,028 + Psyr_3917 0.53 -0.7 4,661,028 + Psyr_3917 0.53 +0.4 4,661,028 + Psyr_3917 0.53 -2.0 4,661,029 - Psyr_3917 0.53 +3.0 4,661,029 - Psyr_3917 0.53 +0.3 4,661,029 - Psyr_3917 0.53 -0.3 4,661,029 - Psyr_3917 0.53 +0.8 4,661,029 - Psyr_3917 0.53 +2.6 4,661,029 - Psyr_3917 0.53 -1.1 4,661,079 + Psyr_3917 0.59 -2.2 4,661,079 + Psyr_3917 0.59 +1.6 4,661,080 - Psyr_3917 0.59 +0.1 4,661,122 - Psyr_3917 0.64 +0.6 4,661,194 + Psyr_3917 0.71 -0.4 4,661,194 + Psyr_3917 0.71 +2.3 4,661,194 + Psyr_3917 0.71 +4.0 4,661,195 - Psyr_3917 0.71 +0.6 4,661,283 + Psyr_3917 0.81 +3.0 4,661,283 + Psyr_3917 0.81 +4.2 4,661,284 - Psyr_3917 0.81 -0.5 4,661,298 + Psyr_3917 0.83 +2.0 4,661,346 + Psyr_3917 0.88 +4.2 4,661,346 + Psyr_3917 0.88 +4.0 4,661,347 - Psyr_3917 0.88 -2.5 4,661,347 - Psyr_3917 0.88 -1.8 4,661,347 - Psyr_3917 0.88 -0.5 4,661,382 + -0.0 4,661,382 + +3.8 4,661,382 + +0.7 4,661,382 + -0.7 4,661,382 + +2.6 4,661,382 + -0.5 4,661,382 + +3.5 4,661,382 + +0.3 4,661,382 + +1.3 4,661,383 - -1.8 4,661,383 - -2.0 4,661,383 - -1.0 4,661,383 - -1.5 4,661,383 - -0.7 4,661,383 - +3.0 4,661,440 + -0.6 4,661,440 + +1.6 4,661,441 - -1.4 4,661,441 - +1.7 4,661,502 + -0.6 4,661,503 - +3.9 4,661,525 + +1.6 4,661,526 - -0.6 4,661,526 - +1.0 4,661,651 + Psyr_3918 0.37 +1.0 4,661,651 + Psyr_3918 0.37 -2.5 4,661,651 + Psyr_3918 0.37 -0.8 4,661,652 - Psyr_3918 0.38 -1.1 4,661,652 - Psyr_3918 0.38 +4.2 4,661,652 - Psyr_3918 0.38 -1.7 4,661,652 - Psyr_3918 0.38 -0.1 4,661,652 - Psyr_3918 0.38 +2.6 4,661,652 - Psyr_3918 0.38 -1.0 4,661,652 - Psyr_3918 0.38 +4.2 4,661,652 - Psyr_3918 0.38 -0.5 4,661,989 + -0.0 4,661,990 - +4.7 4,661,990 - -1.2 4,662,022 + Psyr_3919 0.11 -0.7 4,662,022 + Psyr_3919 0.11 -2.6 4,662,023 - Psyr_3919 0.11 +2.3 4,662,136 + Psyr_3919 0.21 +0.4 4,662,136 + Psyr_3919 0.21 -0.5 4,662,136 + Psyr_3919 0.21 -1.7 4,662,136 + Psyr_3919 0.21 -2.2 4,662,137 - Psyr_3919 0.21 +0.1 4,662,137 - Psyr_3919 0.21 -2.2 4,662,226 + Psyr_3919 0.29 +3.6 4,662,227 - Psyr_3919 0.30 +3.7 4,662,227 - Psyr_3919 0.30 -0.0 4,662,244 + Psyr_3919 0.31 -0.6 4,662,244 + Psyr_3919 0.31 -2.1 4,662,244 + Psyr_3919 0.31 -0.8 4,662,245 - Psyr_3919 0.31 +1.6 4,662,245 - Psyr_3919 0.31 +1.0 4,662,693 + Psyr_3919 0.72 +2.6 4,662,694 - Psyr_3919 0.72 +0.8 4,662,792 + Psyr_3919 0.81 +1.0 4,662,792 + Psyr_3919 0.81 +3.2 4,662,792 + Psyr_3919 0.81 +0.2 4,662,793 - Psyr_3919 0.81 +2.3 4,662,793 - Psyr_3919 0.81 +2.6 4,662,793 - Psyr_3919 0.81 +1.0 4,662,829 + Psyr_3919 0.85 +2.0 4,662,830 - Psyr_3919 0.85 -0.0 4,662,893 - +2.0 4,663,003 - -1.4 4,663,028 + +4.2 4,663,047 + -2.2 4,663,047 + +2.8 4,663,048 - -2.0 4,663,055 + -1.1 4,663,056 - -0.6 4,663,056 - -0.9 4,663,256 + Psyr_3920 0.39 -1.8 4,663,256 + Psyr_3920 0.39 +0.3 4,663,256 + Psyr_3920 0.39 -2.2 4,663,256 + Psyr_3920 0.39 +3.6 4,663,256 + Psyr_3920 0.39 -0.1 4,663,257 - Psyr_3920 0.39 -1.1 4,663,257 - Psyr_3920 0.39 +3.2 4,663,257 - Psyr_3920 0.39 +2.6 4,663,295 + Psyr_3920 0.52 -1.9 4,663,295 + Psyr_3920 0.52 +4.5 4,663,295 + Psyr_3920 0.52 -0.2 4,663,296 - Psyr_3920 0.53 +0.1 4,663,296 - Psyr_3920 0.53 -1.1 4,663,296 - Psyr_3920 0.53 -1.2 4,663,301 + Psyr_3920 0.55 +0.2 4,663,301 + Psyr_3920 0.55 -1.2 4,663,301 + Psyr_3920 0.55 -0.7 4,663,301 + Psyr_3920 0.55 -0.0 4,663,301 + Psyr_3920 0.55 -0.7 4,663,301 + Psyr_3920 0.55 -1.6 4,663,301 + Psyr_3920 0.55 -3.7 4,663,302 - Psyr_3920 0.55 +3.0 4,663,302 - Psyr_3920 0.55 -0.4 4,663,305 + Psyr_3920 0.56 +1.0 4,663,305 + Psyr_3920 0.56 -0.0 4,663,342 + Psyr_3920 0.69 -1.7 4,663,457 + +2.3 4,663,458 - +1.6 4,663,461 + -0.0 4,663,462 - +0.6 4,663,463 + +3.2 4,663,555 - -1.1 4,663,590 + +2.8 4,663,591 - +0.1 4,663,591 - +0.9 4,663,593 + -2.3 4,663,594 - -1.9 4,663,594 - +1.4 4,663,686 + -4.8 4,663,687 - -1.8 4,663,693 - -0.8 4,663,693 - +1.1 4,663,693 - -2.5 4,663,728 + +2.0 4,663,969 + Psyr_3921 0.22 +1.6 4,663,969 + Psyr_3921 0.22 -1.0 4,663,969 + Psyr_3921 0.22 +2.0 4,663,969 + Psyr_3921 0.22 +4.1 4,663,969 + Psyr_3921 0.22 +3.8 4,663,969 + Psyr_3921 0.22 -0.5 4,663,969 + Psyr_3921 0.22 -1.0 4,663,969 + Psyr_3921 0.22 +2.8 4,663,969 + Psyr_3921 0.22 -2.2 4,663,969 + Psyr_3921 0.22 -1.3 4,663,969 + Psyr_3921 0.22 +2.8 4,663,969 + Psyr_3921 0.22 -0.0 4,663,969 + Psyr_3921 0.22 -4.7 4,663,969 + Psyr_3921 0.22 +3.0 4,663,969 + Psyr_3921 0.22 -0.5 4,663,969 + Psyr_3921 0.22 -0.9 4,663,970 - Psyr_3921 0.22 +2.0 4,663,970 - Psyr_3921 0.22 -0.5 4,663,970 - Psyr_3921 0.22 -2.1 4,663,970 - Psyr_3921 0.22 +2.6 4,663,970 - Psyr_3921 0.22 -0.2 4,663,970 - Psyr_3921 0.22 +0.4 4,663,970 - Psyr_3921 0.22 +2.0 4,663,970 - Psyr_3921 0.22 -0.2 4,663,970 - Psyr_3921 0.22 +0.6 4,663,970 - Psyr_3921 0.22 -0.6 4,663,970 - Psyr_3921 0.22 -0.7 4,663,970 - Psyr_3921 0.22 -0.1 4,663,970 - Psyr_3921 0.22 -0.9 4,663,970 - Psyr_3921 0.22 +0.1 4,663,980 + Psyr_3921 0.23 +1.0 4,663,980 + Psyr_3921 0.23 +4.0 4,663,980 + Psyr_3921 0.23 -2.5 4,663,981 - Psyr_3921 0.23 -1.8 4,663,981 - Psyr_3921 0.23 +1.6 4,663,981 - Psyr_3921 0.23 +2.0 4,663,981 - Psyr_3921 0.23 +1.6 4,663,981 - Psyr_3921 0.23 +1.1 4,663,981 - Psyr_3921 0.23 -0.3
Or see this region's nucleotide sequence