Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3899 and Psyr_3900 are separated by 132 nucleotides Psyr_3900 and Psyr_3901 are separated by 453 nucleotides
Psyr_3899: Psyr_3899 - Molybdopterin oxidoreductase:molybdopterin dinucleotide-binding region, at 4,639,221 to 4,641,329
_3899
Psyr_3900: Psyr_3900 - conserved hypothetical protein, at 4,641,462 to 4,641,755
_3900
Psyr_3901: Psyr_3901 - ornithine carbamoyltransferase, at 4,642,209 to 4,643,129
_3901
Position (kb) 4641
4642 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4640.613 kb on - strand, within Psyr_3899 at 4640.655 kb on + strand, within Psyr_3899 at 4640.655 kb on + strand, within Psyr_3899 at 4640.655 kb on + strand, within Psyr_3899 at 4640.655 kb on + strand, within Psyr_3899 at 4640.656 kb on - strand, within Psyr_3899 at 4640.656 kb on - strand, within Psyr_3899 at 4640.869 kb on + strand, within Psyr_3899 at 4640.869 kb on + strand, within Psyr_3899 at 4640.869 kb on + strand, within Psyr_3899 at 4640.869 kb on + strand, within Psyr_3899 at 4640.869 kb on + strand, within Psyr_3899 at 4640.869 kb on + strand, within Psyr_3899 at 4640.869 kb on + strand, within Psyr_3899 at 4640.870 kb on - strand, within Psyr_3899 at 4640.870 kb on - strand, within Psyr_3899 at 4640.870 kb on - strand, within Psyr_3899 at 4640.870 kb on - strand, within Psyr_3899 at 4640.870 kb on - strand, within Psyr_3899 at 4640.870 kb on - strand, within Psyr_3899 at 4640.870 kb on - strand, within Psyr_3899 at 4640.870 kb on - strand, within Psyr_3899 at 4640.870 kb on - strand, within Psyr_3899 at 4640.870 kb on - strand, within Psyr_3899 at 4640.870 kb on - strand, within Psyr_3899 at 4640.956 kb on + strand, within Psyr_3899 at 4640.956 kb on + strand, within Psyr_3899 at 4640.956 kb on + strand, within Psyr_3899 at 4640.956 kb on + strand, within Psyr_3899 at 4640.956 kb on + strand, within Psyr_3899 at 4640.956 kb on + strand, within Psyr_3899 at 4640.956 kb on + strand, within Psyr_3899 at 4640.957 kb on - strand, within Psyr_3899 at 4640.957 kb on - strand, within Psyr_3899 at 4640.980 kb on + strand, within Psyr_3899 at 4640.980 kb on + strand, within Psyr_3899 at 4640.981 kb on - strand, within Psyr_3899 at 4640.984 kb on + strand, within Psyr_3899 at 4640.984 kb on + strand, within Psyr_3899 at 4640.984 kb on + strand, within Psyr_3899 at 4640.984 kb on + strand, within Psyr_3899 at 4640.984 kb on + strand, within Psyr_3899 at 4640.984 kb on + strand, within Psyr_3899 at 4640.984 kb on + strand, within Psyr_3899 at 4640.985 kb on - strand, within Psyr_3899 at 4640.985 kb on - strand, within Psyr_3899 at 4640.985 kb on - strand, within Psyr_3899 at 4640.985 kb on - strand, within Psyr_3899 at 4640.985 kb on - strand, within Psyr_3899 at 4641.008 kb on - strand, within Psyr_3899 at 4641.185 kb on + strand at 4641.185 kb on + strand at 4641.186 kb on - strand at 4641.186 kb on - strand at 4641.186 kb on - strand at 4641.380 kb on + strand at 4641.380 kb on + strand at 4641.380 kb on + strand at 4641.380 kb on + strand at 4641.381 kb on - strand at 4641.381 kb on - strand at 4641.381 kb on - strand at 4641.381 kb on - strand at 4641.381 kb on - strand at 4641.698 kb on + strand, within Psyr_3900 at 4641.698 kb on + strand, within Psyr_3900 at 4641.699 kb on - strand, within Psyr_3900 at 4641.775 kb on + strand at 4641.776 kb on - strand at 4641.780 kb on + strand at 4641.781 kb on - strand at 4641.781 kb on - strand at 4641.794 kb on + strand at 4641.794 kb on + strand at 4641.794 kb on + strand at 4641.795 kb on - strand at 4641.795 kb on - strand at 4641.795 kb on - strand at 4641.796 kb on + strand at 4641.796 kb on + strand at 4641.796 kb on + strand at 4641.897 kb on - strand at 4641.897 kb on - strand at 4641.899 kb on + strand at 4641.899 kb on + strand at 4641.899 kb on + strand at 4641.913 kb on + strand at 4641.914 kb on - strand at 4641.926 kb on + strand at 4641.927 kb on - strand at 4641.927 kb on - strand at 4641.927 kb on - strand at 4641.927 kb on - strand at 4641.927 kb on - strand at 4642.007 kb on - strand at 4642.022 kb on - strand at 4642.036 kb on + strand at 4642.036 kb on + strand at 4642.037 kb on - strand at 4642.037 kb on - strand at 4642.039 kb on + strand at 4642.039 kb on + strand at 4642.066 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 4,640,613 - Psyr_3899 0.66 +4.0 4,640,655 + Psyr_3899 0.68 +3.9 4,640,655 + Psyr_3899 0.68 -1.0 4,640,655 + Psyr_3899 0.68 -2.5 4,640,655 + Psyr_3899 0.68 +3.8 4,640,656 - Psyr_3899 0.68 -1.5 4,640,656 - Psyr_3899 0.68 -1.0 4,640,869 + Psyr_3899 0.78 -1.9 4,640,869 + Psyr_3899 0.78 +1.5 4,640,869 + Psyr_3899 0.78 -3.4 4,640,869 + Psyr_3899 0.78 -1.1 4,640,869 + Psyr_3899 0.78 +1.0 4,640,869 + Psyr_3899 0.78 +3.0 4,640,869 + Psyr_3899 0.78 -3.0 4,640,870 - Psyr_3899 0.78 +2.3 4,640,870 - Psyr_3899 0.78 -1.3 4,640,870 - Psyr_3899 0.78 -1.5 4,640,870 - Psyr_3899 0.78 -1.3 4,640,870 - Psyr_3899 0.78 +1.5 4,640,870 - Psyr_3899 0.78 -0.9 4,640,870 - Psyr_3899 0.78 -1.3 4,640,870 - Psyr_3899 0.78 -2.1 4,640,870 - Psyr_3899 0.78 -0.2 4,640,870 - Psyr_3899 0.78 +3.3 4,640,870 - Psyr_3899 0.78 -2.0 4,640,956 + Psyr_3899 0.82 +4.6 4,640,956 + Psyr_3899 0.82 -4.0 4,640,956 + Psyr_3899 0.82 -0.9 4,640,956 + Psyr_3899 0.82 +3.6 4,640,956 + Psyr_3899 0.82 -1.9 4,640,956 + Psyr_3899 0.82 +0.8 4,640,956 + Psyr_3899 0.82 -1.4 4,640,957 - Psyr_3899 0.82 +3.4 4,640,957 - Psyr_3899 0.82 +2.0 4,640,980 + Psyr_3899 0.83 -0.0 4,640,980 + Psyr_3899 0.83 +2.8 4,640,981 - Psyr_3899 0.83 -0.0 4,640,984 + Psyr_3899 0.84 +3.1 4,640,984 + Psyr_3899 0.84 +3.1 4,640,984 + Psyr_3899 0.84 +2.8 4,640,984 + Psyr_3899 0.84 -0.0 4,640,984 + Psyr_3899 0.84 -0.0 4,640,984 + Psyr_3899 0.84 -0.0 4,640,984 + Psyr_3899 0.84 -0.4 4,640,985 - Psyr_3899 0.84 +0.2 4,640,985 - Psyr_3899 0.84 -1.8 4,640,985 - Psyr_3899 0.84 -1.1 4,640,985 - Psyr_3899 0.84 +1.0 4,640,985 - Psyr_3899 0.84 -3.4 4,641,008 - Psyr_3899 0.85 -1.2 4,641,185 + -1.3 4,641,185 + -2.0 4,641,186 - -2.6 4,641,186 - +3.0 4,641,186 - -1.4 4,641,380 + +3.6 4,641,380 + +3.3 4,641,380 + -0.5 4,641,380 + +3.4 4,641,381 - -0.6 4,641,381 - -0.0 4,641,381 - -0.4 4,641,381 - -0.5 4,641,381 - +1.6 4,641,698 + Psyr_3900 0.80 +1.1 4,641,698 + Psyr_3900 0.80 -1.0 4,641,699 - Psyr_3900 0.81 +2.0 4,641,775 + -1.2 4,641,776 - -1.8 4,641,780 + -0.5 4,641,781 - +2.8 4,641,781 - +3.1 4,641,794 + -0.0 4,641,794 + +3.7 4,641,794 + +1.6 4,641,795 - +1.6 4,641,795 - +3.4 4,641,795 - -0.7 4,641,796 + -1.1 4,641,796 + -0.2 4,641,796 + -0.2 4,641,897 - -1.3 4,641,897 - -2.1 4,641,899 + -2.8 4,641,899 + -0.7 4,641,899 + +1.5 4,641,913 + -0.9 4,641,914 - -2.4 4,641,926 + +3.1 4,641,927 - +0.9 4,641,927 - -0.5 4,641,927 - -0.8 4,641,927 - -2.7 4,641,927 - +0.7 4,642,007 - -0.4 4,642,022 - +0.6 4,642,036 + -1.9 4,642,036 + -3.4 4,642,037 - +0.0 4,642,037 - +2.3 4,642,039 + -1.1 4,642,039 + -1.2 4,642,066 - +4.1
Or see this region's nucleotide sequence