Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3877 and Psyr_3878 are separated by 9 nucleotides Psyr_3878 and Psyr_3879 are separated by 6 nucleotides Psyr_3879 and Psyr_3880 are separated by 293 nucleotides
Psyr_3877: Psyr_3877 - Succinylglutamate desuccinylase/aspartoacylase, at 4,617,719 to 4,618,837
_3877
Psyr_3878: Psyr_3878 - amino acid ABC transporter ATP-binding protein, PAAT family, at 4,618,847 to 4,619,611
_3878
Psyr_3879: Psyr_3879 - hypothetical protein, at 4,619,618 to 4,620,172
_3879
Psyr_3880: Psyr_3880 - Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, at 4,620,466 to 4,622,958
_3880
Position (kb) 4619
4620
4621 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4618.739 kb on + strand at 4618.824 kb on + strand at 4618.824 kb on + strand at 4618.824 kb on + strand at 4618.824 kb on + strand at 4618.824 kb on + strand at 4618.824 kb on + strand at 4618.825 kb on - strand at 4618.825 kb on - strand at 4618.825 kb on - strand at 4618.825 kb on - strand at 4618.825 kb on - strand at 4618.825 kb on - strand at 4618.825 kb on - strand at 4618.825 kb on - strand at 4618.825 kb on - strand at 4618.825 kb on - strand at 4618.825 kb on - strand at 4618.825 kb on - strand at 4618.850 kb on + strand at 4618.850 kb on + strand at 4618.851 kb on - strand at 4618.851 kb on - strand at 4618.851 kb on - strand at 4618.851 kb on - strand at 4618.851 kb on - strand at 4618.851 kb on - strand at 4618.884 kb on - strand at 4619.240 kb on + strand, within Psyr_3878 at 4619.240 kb on + strand, within Psyr_3878 at 4619.241 kb on - strand, within Psyr_3878 at 4619.374 kb on + strand, within Psyr_3878 at 4619.374 kb on + strand, within Psyr_3878 at 4619.374 kb on + strand, within Psyr_3878 at 4619.374 kb on + strand, within Psyr_3878 at 4619.374 kb on + strand, within Psyr_3878 at 4619.374 kb on + strand, within Psyr_3878 at 4619.374 kb on + strand, within Psyr_3878 at 4619.375 kb on - strand, within Psyr_3878 at 4619.375 kb on - strand, within Psyr_3878 at 4619.375 kb on - strand, within Psyr_3878 at 4619.375 kb on - strand, within Psyr_3878 at 4619.505 kb on + strand, within Psyr_3878 at 4619.506 kb on - strand, within Psyr_3878 at 4619.609 kb on + strand at 4619.610 kb on - strand at 4619.610 kb on - strand at 4619.626 kb on + strand at 4619.685 kb on + strand, within Psyr_3879 at 4619.685 kb on + strand, within Psyr_3879 at 4619.685 kb on + strand, within Psyr_3879 at 4619.685 kb on + strand, within Psyr_3879 at 4619.685 kb on + strand, within Psyr_3879 at 4619.685 kb on + strand, within Psyr_3879 at 4619.686 kb on - strand, within Psyr_3879 at 4619.686 kb on - strand, within Psyr_3879 at 4620.120 kb on + strand at 4620.397 kb on + strand at 4620.397 kb on + strand at 4620.398 kb on - strand at 4620.405 kb on + strand at 4620.405 kb on + strand at 4620.405 kb on + strand at 4620.406 kb on - strand at 4620.406 kb on - strand at 4620.410 kb on + strand at 4620.410 kb on + strand at 4620.410 kb on + strand at 4620.411 kb on - strand at 4620.413 kb on + strand at 4620.439 kb on - strand at 4620.607 kb on + strand at 4620.607 kb on + strand at 4620.651 kb on + strand at 4621.071 kb on + strand, within Psyr_3880
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 4,618,739 + -2.6 4,618,824 + +2.0 4,618,824 + +4.1 4,618,824 + -0.0 4,618,824 + -1.1 4,618,824 + -1.6 4,618,824 + +0.4 4,618,825 - -0.0 4,618,825 - -2.0 4,618,825 - -0.8 4,618,825 - +2.3 4,618,825 - +1.5 4,618,825 - +0.2 4,618,825 - +1.4 4,618,825 - +2.6 4,618,825 - +4.4 4,618,825 - +4.5 4,618,825 - +2.6 4,618,825 - +0.1 4,618,850 + -0.2 4,618,850 + +2.0 4,618,851 - +3.2 4,618,851 - +2.0 4,618,851 - +1.2 4,618,851 - -0.8 4,618,851 - -4.1 4,618,851 - -0.5 4,618,884 - -0.4 4,619,240 + Psyr_3878 0.51 -0.2 4,619,240 + Psyr_3878 0.51 +3.3 4,619,241 - Psyr_3878 0.52 +1.0 4,619,374 + Psyr_3878 0.69 -0.0 4,619,374 + Psyr_3878 0.69 +3.0 4,619,374 + Psyr_3878 0.69 -0.0 4,619,374 + Psyr_3878 0.69 -1.3 4,619,374 + Psyr_3878 0.69 +3.4 4,619,374 + Psyr_3878 0.69 +0.2 4,619,374 + Psyr_3878 0.69 -1.0 4,619,375 - Psyr_3878 0.69 -0.8 4,619,375 - Psyr_3878 0.69 +2.2 4,619,375 - Psyr_3878 0.69 +2.8 4,619,375 - Psyr_3878 0.69 -3.4 4,619,505 + Psyr_3878 0.86 -0.0 4,619,506 - Psyr_3878 0.86 -0.8 4,619,609 + -0.5 4,619,610 - -0.0 4,619,610 - -1.3 4,619,626 + +0.0 4,619,685 + Psyr_3879 0.12 -2.0 4,619,685 + Psyr_3879 0.12 +3.4 4,619,685 + Psyr_3879 0.12 +3.6 4,619,685 + Psyr_3879 0.12 -0.3 4,619,685 + Psyr_3879 0.12 -0.6 4,619,685 + Psyr_3879 0.12 +3.4 4,619,686 - Psyr_3879 0.12 -0.8 4,619,686 - Psyr_3879 0.12 +4.2 4,620,120 + +1.6 4,620,397 + -2.3 4,620,397 + +2.8 4,620,398 - -0.8 4,620,405 + -0.7 4,620,405 + -0.5 4,620,405 + +2.6 4,620,406 - -0.0 4,620,406 - -0.2 4,620,410 + +3.6 4,620,410 + +2.6 4,620,410 + -0.6 4,620,411 - +2.6 4,620,413 + +3.9 4,620,439 - -0.5 4,620,607 + -2.0 4,620,607 + -0.0 4,620,651 + +3.3 4,621,071 + Psyr_3880 0.24 -1.3
Or see this region's nucleotide sequence