Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3860 and Psyr_3861 overlap by 8 nucleotides Psyr_3861 and Psyr_3862 are separated by 220 nucleotides Psyr_3862 and Psyr_3863 are separated by 3 nucleotides
Psyr_3860: Psyr_3860 - conserved hypothetical protein, at 4,600,478 to 4,601,236
_3860
Psyr_3861: Psyr_3861 - Protein of unknown function DUF1145, at 4,601,229 to 4,601,504
_3861
Psyr_3862: Psyr_3862 - conserved hypothetical protein, at 4,601,725 to 4,602,222
_3862
Psyr_3863: Psyr_3863 - SEC-C motif protein, at 4,602,226 to 4,602,699
_3863
Position (kb) 4601
4602
4603 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 4600.750 kb on + strand, within Psyr_3860 at 4600.752 kb on + strand, within Psyr_3860 at 4600.752 kb on + strand, within Psyr_3860 at 4600.753 kb on - strand, within Psyr_3860 at 4600.819 kb on - strand, within Psyr_3860 at 4600.990 kb on + strand, within Psyr_3860 at 4600.990 kb on + strand, within Psyr_3860 at 4600.991 kb on - strand, within Psyr_3860 at 4600.991 kb on - strand, within Psyr_3860 at 4600.991 kb on - strand, within Psyr_3860 at 4600.991 kb on - strand, within Psyr_3860 at 4600.991 kb on - strand, within Psyr_3860 at 4601.176 kb on + strand at 4601.176 kb on + strand at 4601.177 kb on - strand at 4601.177 kb on - strand at 4601.230 kb on + strand at 4601.231 kb on - strand at 4601.231 kb on - strand at 4601.475 kb on + strand, within Psyr_3861 at 4601.575 kb on - strand at 4601.586 kb on - strand at 4601.626 kb on + strand at 4601.626 kb on + strand at 4601.626 kb on + strand at 4601.626 kb on + strand at 4601.626 kb on + strand at 4601.626 kb on + strand at 4601.626 kb on + strand at 4601.626 kb on + strand at 4601.626 kb on + strand at 4601.626 kb on + strand at 4601.627 kb on - strand at 4601.627 kb on - strand at 4601.627 kb on - strand at 4601.627 kb on - strand at 4601.627 kb on - strand at 4601.627 kb on - strand at 4601.627 kb on - strand at 4601.627 kb on - strand at 4601.627 kb on - strand at 4601.627 kb on - strand at 4601.627 kb on - strand at 4601.627 kb on - strand at 4601.696 kb on - strand at 4601.749 kb on - strand at 4601.749 kb on - strand at 4602.129 kb on + strand, within Psyr_3862 at 4602.129 kb on + strand, within Psyr_3862 at 4602.133 kb on + strand, within Psyr_3862 at 4602.134 kb on - strand, within Psyr_3862 at 4602.134 kb on - strand, within Psyr_3862 at 4602.148 kb on + strand, within Psyr_3862 at 4602.181 kb on + strand at 4602.182 kb on - strand at 4602.182 kb on - strand at 4602.212 kb on - strand at 4602.212 kb on - strand at 4602.212 kb on - strand at 4602.212 kb on - strand at 4602.225 kb on + strand at 4602.225 kb on + strand at 4602.225 kb on + strand at 4602.225 kb on + strand at 4602.225 kb on + strand at 4602.225 kb on + strand at 4602.225 kb on + strand at 4602.225 kb on + strand at 4602.226 kb on - strand at 4602.226 kb on - strand at 4602.226 kb on - strand at 4602.226 kb on - strand at 4602.231 kb on + strand at 4602.338 kb on - strand, within Psyr_3863 at 4602.346 kb on + strand, within Psyr_3863 at 4602.346 kb on + strand, within Psyr_3863 at 4602.347 kb on - strand, within Psyr_3863 at 4602.347 kb on - strand, within Psyr_3863 at 4602.347 kb on - strand, within Psyr_3863 at 4602.381 kb on + strand, within Psyr_3863 at 4602.381 kb on + strand, within Psyr_3863 at 4602.381 kb on + strand, within Psyr_3863 at 4602.382 kb on - strand, within Psyr_3863 at 4602.464 kb on + strand, within Psyr_3863 at 4602.465 kb on - strand, within Psyr_3863 at 4602.465 kb on - strand, within Psyr_3863 at 4602.555 kb on + strand, within Psyr_3863 at 4602.596 kb on - strand, within Psyr_3863 at 4602.596 kb on - strand, within Psyr_3863 at 4602.600 kb on + strand, within Psyr_3863 at 4602.601 kb on - strand, within Psyr_3863 at 4602.634 kb on - strand, within Psyr_3863 at 4602.688 kb on + strand at 4602.689 kb on - strand at 4602.689 kb on - strand at 4602.689 kb on - strand at 4602.689 kb on - strand at 4602.689 kb on - strand at 4602.689 kb on - strand at 4602.689 kb on - strand at 4602.689 kb on - strand at 4602.856 kb on - strand at 4603.155 kb on + strand at 4603.155 kb on + strand at 4603.155 kb on + strand at 4603.155 kb on + strand at 4603.155 kb on + strand at 4603.155 kb on + strand at 4603.155 kb on + strand at 4603.155 kb on + strand at 4603.155 kb on + strand at 4603.155 kb on + strand at 4603.155 kb on + strand at 4603.155 kb on + strand at 4603.155 kb on + strand at 4603.155 kb on + strand at 4603.155 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 4,600,750 + Psyr_3860 0.36 +0.2 4,600,752 + Psyr_3860 0.36 +3.8 4,600,752 + Psyr_3860 0.36 -1.8 4,600,753 - Psyr_3860 0.36 +1.0 4,600,819 - Psyr_3860 0.45 -0.6 4,600,990 + Psyr_3860 0.67 -0.8 4,600,990 + Psyr_3860 0.67 +0.3 4,600,991 - Psyr_3860 0.68 +1.7 4,600,991 - Psyr_3860 0.68 +1.2 4,600,991 - Psyr_3860 0.68 +3.8 4,600,991 - Psyr_3860 0.68 +2.6 4,600,991 - Psyr_3860 0.68 -0.0 4,601,176 + +4.8 4,601,176 + +4.2 4,601,177 - +4.1 4,601,177 - -1.1 4,601,230 + -0.3 4,601,231 - -0.3 4,601,231 - +0.8 4,601,475 + Psyr_3861 0.89 -0.8 4,601,575 - -0.5 4,601,586 - -1.8 4,601,626 + +0.6 4,601,626 + +0.2 4,601,626 + +1.4 4,601,626 + +1.6 4,601,626 + +3.7 4,601,626 + +3.7 4,601,626 + +0.1 4,601,626 + -0.9 4,601,626 + +3.8 4,601,626 + -1.8 4,601,627 - +3.1 4,601,627 - +2.8 4,601,627 - +2.0 4,601,627 - -0.0 4,601,627 - -3.3 4,601,627 - -0.0 4,601,627 - +2.6 4,601,627 - +3.9 4,601,627 - +3.4 4,601,627 - -2.2 4,601,627 - +2.3 4,601,627 - +3.4 4,601,696 - +2.0 4,601,749 - +1.1 4,601,749 - +2.6 4,602,129 + Psyr_3862 0.81 -1.9 4,602,129 + Psyr_3862 0.81 -2.0 4,602,133 + Psyr_3862 0.82 -0.4 4,602,134 - Psyr_3862 0.82 +3.3 4,602,134 - Psyr_3862 0.82 -2.2 4,602,148 + Psyr_3862 0.85 -0.5 4,602,181 + +0.1 4,602,182 - +4.0 4,602,182 - +0.6 4,602,212 - +3.6 4,602,212 - +3.7 4,602,212 - +1.0 4,602,212 - -0.8 4,602,225 + -1.6 4,602,225 + +3.2 4,602,225 + +2.6 4,602,225 + -1.1 4,602,225 + -0.3 4,602,225 + -0.0 4,602,225 + +3.6 4,602,225 + +3.4 4,602,226 - -3.1 4,602,226 - +3.4 4,602,226 - +3.4 4,602,226 - +1.0 4,602,231 + -1.5 4,602,338 - Psyr_3863 0.24 +0.4 4,602,346 + Psyr_3863 0.25 +2.0 4,602,346 + Psyr_3863 0.25 +2.8 4,602,347 - Psyr_3863 0.26 +0.3 4,602,347 - Psyr_3863 0.26 -0.0 4,602,347 - Psyr_3863 0.26 +3.2 4,602,381 + Psyr_3863 0.33 +1.6 4,602,381 + Psyr_3863 0.33 +0.9 4,602,381 + Psyr_3863 0.33 +3.0 4,602,382 - Psyr_3863 0.33 -1.2 4,602,464 + Psyr_3863 0.50 -0.9 4,602,465 - Psyr_3863 0.50 -0.0 4,602,465 - Psyr_3863 0.50 +2.8 4,602,555 + Psyr_3863 0.69 +1.5 4,602,596 - Psyr_3863 0.78 +1.6 4,602,596 - Psyr_3863 0.78 +0.7 4,602,600 + Psyr_3863 0.79 +1.0 4,602,601 - Psyr_3863 0.79 +1.0 4,602,634 - Psyr_3863 0.86 -2.1 4,602,688 + -2.0 4,602,689 - +3.4 4,602,689 - -4.8 4,602,689 - -0.6 4,602,689 - +3.6 4,602,689 - -1.0 4,602,689 - -3.6 4,602,689 - -1.6 4,602,689 - -1.9 4,602,856 - +3.9 4,603,155 + +2.3 4,603,155 + +0.8 4,603,155 + +3.0 4,603,155 + -2.5 4,603,155 + -1.0 4,603,155 + -1.1 4,603,155 + +5.2 4,603,155 + -1.6 4,603,155 + +3.8 4,603,155 + -0.6 4,603,155 + -0.9 4,603,155 + -2.5 4,603,155 + -0.9 4,603,155 + -0.0 4,603,155 + +1.4
Or see this region's nucleotide sequence