Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3852 and Psyr_3853 are separated by 147 nucleotides Psyr_3853 and Psyr_3854 are separated by 74 nucleotides Psyr_3854 and Psyr_3855 are separated by 153 nucleotides
Psyr_3852: Psyr_3852 - lipoprotein SlyB, putative, at 4,591,592 to 4,592,056
_3852
Psyr_3853: Psyr_3853 - Pyridoxamine 5'-phosphate oxidase, at 4,592,204 to 4,592,851
_3853
Psyr_3854: Psyr_3854 - OmpA/MotB, at 4,592,926 to 4,594,086
_3854
Psyr_3855: Psyr_3855 - Beta-lactamase, at 4,594,240 to 4,595,388
_3855
Position (kb) 4592
4593
4594
4595 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 4591.968 kb on + strand, within Psyr_3852 at 4591.993 kb on + strand, within Psyr_3852 at 4591.993 kb on + strand, within Psyr_3852 at 4591.993 kb on + strand, within Psyr_3852 at 4591.994 kb on - strand, within Psyr_3852 at 4591.994 kb on - strand, within Psyr_3852 at 4592.056 kb on + strand at 4592.056 kb on + strand at 4592.088 kb on + strand at 4592.089 kb on - strand at 4592.089 kb on - strand at 4592.133 kb on + strand at 4592.134 kb on - strand at 4592.152 kb on + strand at 4592.153 kb on - strand at 4592.153 kb on - strand at 4592.153 kb on - strand at 4592.153 kb on - strand at 4592.153 kb on - strand at 4592.167 kb on + strand at 4592.167 kb on + strand at 4592.167 kb on + strand at 4592.167 kb on + strand at 4592.168 kb on - strand at 4592.196 kb on + strand at 4592.927 kb on + strand at 4592.927 kb on + strand at 4592.927 kb on + strand at 4592.927 kb on + strand at 4592.927 kb on + strand at 4592.927 kb on + strand at 4592.927 kb on + strand at 4592.928 kb on - strand at 4592.928 kb on - strand at 4592.928 kb on - strand at 4592.928 kb on - strand at 4592.928 kb on - strand at 4592.928 kb on - strand at 4592.931 kb on + strand at 4593.636 kb on - strand, within Psyr_3854 at 4594.075 kb on - strand at 4594.075 kb on - strand at 4594.075 kb on - strand at 4594.125 kb on - strand at 4594.125 kb on - strand at 4594.125 kb on - strand at 4594.125 kb on - strand at 4594.129 kb on - strand at 4594.137 kb on - strand at 4594.137 kb on - strand at 4594.139 kb on - strand at 4594.139 kb on - strand at 4594.139 kb on - strand at 4594.148 kb on - strand at 4594.199 kb on + strand at 4594.229 kb on - strand at 4594.229 kb on - strand at 4594.229 kb on - strand at 4594.229 kb on - strand at 4594.241 kb on + strand at 4594.241 kb on + strand at 4594.241 kb on + strand at 4594.242 kb on - strand at 4594.242 kb on - strand at 4594.301 kb on + strand at 4594.301 kb on + strand at 4594.302 kb on - strand at 4594.302 kb on - strand at 4594.314 kb on + strand at 4594.314 kb on + strand at 4594.314 kb on + strand at 4594.314 kb on + strand at 4594.315 kb on - strand at 4594.315 kb on - strand at 4594.315 kb on - strand at 4594.315 kb on - strand at 4594.315 kb on - strand at 4594.364 kb on - strand, within Psyr_3855 at 4594.413 kb on - strand, within Psyr_3855 at 4594.565 kb on + strand, within Psyr_3855 at 4594.565 kb on + strand, within Psyr_3855 at 4594.566 kb on - strand, within Psyr_3855 at 4594.566 kb on - strand, within Psyr_3855 at 4594.907 kb on + strand, within Psyr_3855 at 4594.907 kb on + strand, within Psyr_3855 at 4594.907 kb on + strand, within Psyr_3855 at 4594.907 kb on + strand, within Psyr_3855 at 4594.908 kb on - strand, within Psyr_3855 at 4594.908 kb on - strand, within Psyr_3855 at 4594.908 kb on - strand, within Psyr_3855 at 4595.070 kb on + strand, within Psyr_3855
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 4,591,968 + Psyr_3852 0.81 +4.2 4,591,993 + Psyr_3852 0.86 -1.9 4,591,993 + Psyr_3852 0.86 -2.7 4,591,993 + Psyr_3852 0.86 -0.9 4,591,994 - Psyr_3852 0.86 -1.1 4,591,994 - Psyr_3852 0.86 +1.5 4,592,056 + +3.8 4,592,056 + -0.4 4,592,088 + -1.9 4,592,089 - -2.4 4,592,089 - -2.0 4,592,133 + +2.0 4,592,134 - +4.2 4,592,152 + -0.2 4,592,153 - +4.3 4,592,153 - -0.5 4,592,153 - -0.8 4,592,153 - +1.0 4,592,153 - +1.0 4,592,167 + +3.5 4,592,167 + +3.4 4,592,167 + -0.6 4,592,167 + +1.5 4,592,168 - +3.4 4,592,196 + -1.4 4,592,927 + +0.4 4,592,927 + +3.7 4,592,927 + +2.0 4,592,927 + +2.0 4,592,927 + -0.0 4,592,927 + -0.0 4,592,927 + -3.1 4,592,928 - +2.8 4,592,928 - -0.0 4,592,928 - -0.5 4,592,928 - +3.0 4,592,928 - -2.0 4,592,928 - +0.7 4,592,931 + +1.6 4,593,636 - Psyr_3854 0.61 -2.6 4,594,075 - -0.9 4,594,075 - +1.0 4,594,075 - +2.3 4,594,125 - +3.6 4,594,125 - -0.3 4,594,125 - -0.3 4,594,125 - -2.1 4,594,129 - +2.6 4,594,137 - +0.7 4,594,137 - +1.6 4,594,139 - -1.6 4,594,139 - -0.0 4,594,139 - -4.8 4,594,148 - -3.1 4,594,199 + -2.4 4,594,229 - -0.7 4,594,229 - -4.3 4,594,229 - +2.0 4,594,229 - -2.1 4,594,241 + -2.0 4,594,241 + -0.6 4,594,241 + -0.0 4,594,242 - -0.4 4,594,242 - +3.4 4,594,301 + -0.0 4,594,301 + +0.6 4,594,302 - -0.5 4,594,302 - +3.0 4,594,314 + +2.6 4,594,314 + +3.7 4,594,314 + +1.0 4,594,314 + +3.3 4,594,315 - -1.3 4,594,315 - +2.8 4,594,315 - -1.0 4,594,315 - -1.4 4,594,315 - +3.6 4,594,364 - Psyr_3855 0.11 -1.9 4,594,413 - Psyr_3855 0.15 +0.6 4,594,565 + Psyr_3855 0.28 -0.9 4,594,565 + Psyr_3855 0.28 -2.6 4,594,566 - Psyr_3855 0.28 +0.6 4,594,566 - Psyr_3855 0.28 -1.8 4,594,907 + Psyr_3855 0.58 +3.3 4,594,907 + Psyr_3855 0.58 -2.5 4,594,907 + Psyr_3855 0.58 +2.6 4,594,907 + Psyr_3855 0.58 -0.1 4,594,908 - Psyr_3855 0.58 -1.9 4,594,908 - Psyr_3855 0.58 +0.6 4,594,908 - Psyr_3855 0.58 +1.0 4,595,070 + Psyr_3855 0.72 +2.3
Or see this region's nucleotide sequence