Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3825 and Psyr_3826 are separated by 233 nucleotides Psyr_3826 and Psyr_3827 are separated by 101 nucleotides
Psyr_3825: Psyr_3825 - transcriptional regulator, LysR family, at 4,553,184 to 4,554,107
_3825
Psyr_3826: Psyr_3826 - Peptidyl-prolyl cis-trans isomerase, cyclophilin type, at 4,554,341 to 4,554,904
_3826
Psyr_3827: Psyr_3827 - ABC transporter, transmembrane region:ABC transporter, at 4,555,006 to 4,556,838
_3827
Position (kb) 4554
4555 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 4553.386 kb on + strand, within Psyr_3825 at 4553.500 kb on - strand, within Psyr_3825 at 4553.988 kb on + strand, within Psyr_3825 at 4553.988 kb on + strand, within Psyr_3825 at 4553.988 kb on + strand, within Psyr_3825 at 4553.988 kb on + strand, within Psyr_3825 at 4553.988 kb on + strand, within Psyr_3825 at 4553.989 kb on - strand, within Psyr_3825 at 4553.989 kb on - strand, within Psyr_3825 at 4553.989 kb on - strand, within Psyr_3825 at 4553.989 kb on - strand, within Psyr_3825 at 4553.989 kb on - strand, within Psyr_3825 at 4554.264 kb on - strand at 4554.264 kb on - strand at 4554.293 kb on - strand at 4554.314 kb on - strand at 4554.320 kb on + strand at 4554.320 kb on + strand at 4554.321 kb on - strand at 4554.321 kb on - strand at 4554.506 kb on + strand, within Psyr_3826 at 4554.506 kb on + strand, within Psyr_3826 at 4554.507 kb on - strand, within Psyr_3826 at 4554.524 kb on + strand, within Psyr_3826 at 4554.524 kb on + strand, within Psyr_3826 at 4554.525 kb on - strand, within Psyr_3826 at 4554.679 kb on + strand, within Psyr_3826 at 4554.679 kb on + strand, within Psyr_3826 at 4554.680 kb on - strand, within Psyr_3826 at 4554.835 kb on + strand, within Psyr_3826 at 4554.968 kb on + strand at 4554.968 kb on + strand at 4554.968 kb on + strand at 4554.968 kb on + strand at 4554.969 kb on - strand at 4555.039 kb on - strand at 4555.090 kb on + strand at 4555.090 kb on + strand at 4555.091 kb on - strand at 4555.091 kb on - strand at 4555.091 kb on - strand at 4555.096 kb on + strand at 4555.097 kb on - strand at 4555.097 kb on - strand at 4555.099 kb on + strand at 4555.099 kb on + strand at 4555.100 kb on - strand at 4555.112 kb on + strand at 4555.183 kb on + strand at 4555.184 kb on - strand at 4555.239 kb on + strand, within Psyr_3827 at 4555.322 kb on + strand, within Psyr_3827 at 4555.322 kb on + strand, within Psyr_3827 at 4555.323 kb on - strand, within Psyr_3827 at 4555.382 kb on + strand, within Psyr_3827 at 4555.383 kb on - strand, within Psyr_3827 at 4555.464 kb on - strand, within Psyr_3827 at 4555.609 kb on + strand, within Psyr_3827 at 4555.609 kb on + strand, within Psyr_3827 at 4555.609 kb on + strand, within Psyr_3827 at 4555.610 kb on - strand, within Psyr_3827 at 4555.691 kb on - strand, within Psyr_3827 at 4555.841 kb on + strand, within Psyr_3827 at 4555.841 kb on + strand, within Psyr_3827 at 4555.893 kb on + strand, within Psyr_3827 at 4555.893 kb on + strand, within Psyr_3827
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 4,553,386 + Psyr_3825 0.22 -0.1 4,553,500 - Psyr_3825 0.34 +3.8 4,553,988 + Psyr_3825 0.87 -1.6 4,553,988 + Psyr_3825 0.87 -0.0 4,553,988 + Psyr_3825 0.87 +2.8 4,553,988 + Psyr_3825 0.87 -1.1 4,553,988 + Psyr_3825 0.87 -1.6 4,553,989 - Psyr_3825 0.87 +2.3 4,553,989 - Psyr_3825 0.87 +1.0 4,553,989 - Psyr_3825 0.87 +1.6 4,553,989 - Psyr_3825 0.87 +3.9 4,553,989 - Psyr_3825 0.87 +0.6 4,554,264 - -3.0 4,554,264 - -1.2 4,554,293 - +3.1 4,554,314 - +2.0 4,554,320 + +3.4 4,554,320 + +2.6 4,554,321 - +0.6 4,554,321 - +5.0 4,554,506 + Psyr_3826 0.29 +3.7 4,554,506 + Psyr_3826 0.29 -1.4 4,554,507 - Psyr_3826 0.29 +2.0 4,554,524 + Psyr_3826 0.32 +2.3 4,554,524 + Psyr_3826 0.32 -1.8 4,554,525 - Psyr_3826 0.33 -2.6 4,554,679 + Psyr_3826 0.60 -1.3 4,554,679 + Psyr_3826 0.60 -1.7 4,554,680 - Psyr_3826 0.60 -0.0 4,554,835 + Psyr_3826 0.88 +1.6 4,554,968 + +3.1 4,554,968 + -0.0 4,554,968 + -0.3 4,554,968 + +2.3 4,554,969 - -2.2 4,555,039 - -0.8 4,555,090 + -1.7 4,555,090 + +1.1 4,555,091 - +2.0 4,555,091 - +3.0 4,555,091 - -0.4 4,555,096 + +2.6 4,555,097 - +2.0 4,555,097 - +2.6 4,555,099 + +2.0 4,555,099 + +2.6 4,555,100 - -0.0 4,555,112 + -3.2 4,555,183 + +3.1 4,555,184 - +1.6 4,555,239 + Psyr_3827 0.13 +3.1 4,555,322 + Psyr_3827 0.17 -0.8 4,555,322 + Psyr_3827 0.17 -0.8 4,555,323 - Psyr_3827 0.17 -2.1 4,555,382 + Psyr_3827 0.21 -1.8 4,555,383 - Psyr_3827 0.21 -0.9 4,555,464 - Psyr_3827 0.25 +1.0 4,555,609 + Psyr_3827 0.33 -1.0 4,555,609 + Psyr_3827 0.33 -1.2 4,555,609 + Psyr_3827 0.33 -1.4 4,555,610 - Psyr_3827 0.33 -1.5 4,555,691 - Psyr_3827 0.37 +1.0 4,555,841 + Psyr_3827 0.46 -1.2 4,555,841 + Psyr_3827 0.46 -1.6 4,555,893 + Psyr_3827 0.48 +1.5 4,555,893 + Psyr_3827 0.48 +0.3
Or see this region's nucleotide sequence