Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3824

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3823 and Psyr_3824 are separated by 186 nucleotidesPsyr_3824 and Psyr_3825 are separated by 67 nucleotides Psyr_3823: Psyr_3823 - Hemolysin-type calcium-binding region:Putative Ig, at 4,547,783 to 4,552,615 _3823 Psyr_3824: Psyr_3824 - conserved hypothetical protein, at 4,552,802 to 4,553,116 _3824 Psyr_3825: Psyr_3825 - transcriptional regulator, LysR family, at 4,553,184 to 4,554,107 _3825 Position (kb) 4552 4553 4554Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4551.821 kb on + strand, within Psyr_3823at 4551.821 kb on + strand, within Psyr_3823at 4551.821 kb on + strand, within Psyr_3823at 4551.821 kb on + strand, within Psyr_3823at 4551.822 kb on - strand, within Psyr_3823at 4551.822 kb on - strand, within Psyr_3823at 4551.822 kb on - strand, within Psyr_3823at 4551.824 kb on + strand, within Psyr_3823at 4551.824 kb on + strand, within Psyr_3823at 4551.824 kb on + strand, within Psyr_3823at 4551.824 kb on + strand, within Psyr_3823at 4551.824 kb on + strand, within Psyr_3823at 4551.825 kb on - strand, within Psyr_3823at 4551.889 kb on + strand, within Psyr_3823at 4551.896 kb on + strand, within Psyr_3823at 4551.896 kb on + strand, within Psyr_3823at 4551.896 kb on + strand, within Psyr_3823at 4551.897 kb on - strand, within Psyr_3823at 4551.897 kb on - strand, within Psyr_3823at 4551.897 kb on - strand, within Psyr_3823at 4551.914 kb on + strand, within Psyr_3823at 4551.915 kb on - strand, within Psyr_3823at 4551.915 kb on - strand, within Psyr_3823at 4552.001 kb on + strand, within Psyr_3823at 4552.058 kb on + strand, within Psyr_3823at 4552.059 kb on - strand, within Psyr_3823at 4552.319 kb on + strandat 4552.319 kb on + strandat 4552.319 kb on + strandat 4552.319 kb on + strandat 4552.319 kb on + strandat 4552.320 kb on - strandat 4552.320 kb on - strandat 4552.320 kb on - strandat 4552.524 kb on + strandat 4552.524 kb on + strandat 4552.524 kb on + strandat 4552.525 kb on - strandat 4552.525 kb on - strandat 4552.638 kb on + strandat 4552.693 kb on + strandat 4552.693 kb on + strandat 4552.694 kb on - strandat 4552.786 kb on + strandat 4552.787 kb on - strandat 4552.787 kb on - strandat 4552.798 kb on - strandat 4552.839 kb on - strand, within Psyr_3824at 4552.955 kb on + strand, within Psyr_3824at 4552.956 kb on - strand, within Psyr_3824at 4552.956 kb on - strand, within Psyr_3824at 4552.956 kb on - strand, within Psyr_3824at 4552.965 kb on + strand, within Psyr_3824at 4552.966 kb on - strand, within Psyr_3824at 4552.998 kb on + strand, within Psyr_3824at 4553.016 kb on + strand, within Psyr_3824at 4553.016 kb on + strand, within Psyr_3824at 4553.016 kb on + strand, within Psyr_3824at 4553.017 kb on - strand, within Psyr_3824at 4553.017 kb on - strand, within Psyr_3824at 4553.062 kb on - strand, within Psyr_3824at 4553.147 kb on + strandat 4553.148 kb on - strandat 4553.148 kb on - strandat 4553.167 kb on + strandat 4553.168 kb on - strandat 4553.168 kb on - strandat 4553.168 kb on - strandat 4553.178 kb on + strandat 4553.178 kb on + strandat 4553.178 kb on + strandat 4553.179 kb on - strandat 4553.179 kb on - strandat 4553.179 kb on - strandat 4553.179 kb on - strandat 4553.179 kb on - strandat 4553.298 kb on + strand, within Psyr_3825at 4553.298 kb on + strand, within Psyr_3825at 4553.298 kb on + strand, within Psyr_3825at 4553.299 kb on - strand, within Psyr_3825at 4553.299 kb on - strand, within Psyr_3825at 4553.386 kb on + strand, within Psyr_3825at 4553.500 kb on - strand, within Psyr_3825at 4553.988 kb on + strand, within Psyr_3825at 4553.988 kb on + strand, within Psyr_3825at 4553.988 kb on + strand, within Psyr_3825at 4553.988 kb on + strand, within Psyr_3825at 4553.988 kb on + strand, within Psyr_3825at 4553.989 kb on - strand, within Psyr_3825at 4553.989 kb on - strand, within Psyr_3825at 4553.989 kb on - strand, within Psyr_3825at 4553.989 kb on - strand, within Psyr_3825at 4553.989 kb on - strand, within Psyr_3825

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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4,551,821 + Psyr_3823 0.84 -3.6
4,551,821 + Psyr_3823 0.84 +1.6
4,551,821 + Psyr_3823 0.84 +2.6
4,551,821 + Psyr_3823 0.84 -1.1
4,551,822 - Psyr_3823 0.84 +1.0
4,551,822 - Psyr_3823 0.84 +2.9
4,551,822 - Psyr_3823 0.84 -0.2
4,551,824 + Psyr_3823 0.84 +3.0
4,551,824 + Psyr_3823 0.84 +4.0
4,551,824 + Psyr_3823 0.84 -3.2
4,551,824 + Psyr_3823 0.84 +4.3
4,551,824 + Psyr_3823 0.84 +2.8
4,551,825 - Psyr_3823 0.84 -0.3
4,551,889 + Psyr_3823 0.85 -1.7
4,551,896 + Psyr_3823 0.85 +0.8
4,551,896 + Psyr_3823 0.85 -0.8
4,551,896 + Psyr_3823 0.85 +3.1
4,551,897 - Psyr_3823 0.85 +3.0
4,551,897 - Psyr_3823 0.85 -0.1
4,551,897 - Psyr_3823 0.85 +1.0
4,551,914 + Psyr_3823 0.85 -0.8
4,551,915 - Psyr_3823 0.85 -0.6
4,551,915 - Psyr_3823 0.85 +3.4
4,552,001 + Psyr_3823 0.87 -1.6
4,552,058 + Psyr_3823 0.88 +2.8
4,552,059 - Psyr_3823 0.88 +0.6
4,552,319 + -1.1
4,552,319 + -0.0
4,552,319 + -2.7
4,552,319 + +3.1
4,552,319 + +2.8
4,552,320 - -1.3
4,552,320 - -0.4
4,552,320 - +2.8
4,552,524 + -0.8
4,552,524 + -0.2
4,552,524 + +3.0
4,552,525 - -1.8
4,552,525 - +3.3
4,552,638 + -0.0
4,552,693 + +3.9
4,552,693 + +4.3
4,552,694 - -0.5
4,552,786 + -1.4
4,552,787 - -0.2
4,552,787 - -1.6
4,552,798 - +1.1
4,552,839 - Psyr_3824 0.12 +1.0
4,552,955 + Psyr_3824 0.49 +3.1
4,552,956 - Psyr_3824 0.49 +0.1
4,552,956 - Psyr_3824 0.49 +3.1
4,552,956 - Psyr_3824 0.49 +1.4
4,552,965 + Psyr_3824 0.52 +3.6
4,552,966 - Psyr_3824 0.52 -0.4
4,552,998 + Psyr_3824 0.62 -0.4
4,553,016 + Psyr_3824 0.68 -1.2
4,553,016 + Psyr_3824 0.68 -2.1
4,553,016 + Psyr_3824 0.68 +3.1
4,553,017 - Psyr_3824 0.68 +0.3
4,553,017 - Psyr_3824 0.68 +1.0
4,553,062 - Psyr_3824 0.83 -0.0
4,553,147 + -0.0
4,553,148 - +2.3
4,553,148 - +4.3
4,553,167 + +1.6
4,553,168 - -1.4
4,553,168 - -2.4
4,553,168 - +2.8
4,553,178 + +1.6
4,553,178 + +1.0
4,553,178 + -1.0
4,553,179 - +0.8
4,553,179 - -2.3
4,553,179 - -1.8
4,553,179 - -0.6
4,553,179 - +2.0
4,553,298 + Psyr_3825 0.12 +3.4
4,553,298 + Psyr_3825 0.12 +1.6
4,553,298 + Psyr_3825 0.12 -1.3
4,553,299 - Psyr_3825 0.12 -0.8
4,553,299 - Psyr_3825 0.12 -2.6
4,553,386 + Psyr_3825 0.22 -0.1
4,553,500 - Psyr_3825 0.34 +3.8
4,553,988 + Psyr_3825 0.87 -1.6
4,553,988 + Psyr_3825 0.87 -0.0
4,553,988 + Psyr_3825 0.87 +2.8
4,553,988 + Psyr_3825 0.87 -1.1
4,553,988 + Psyr_3825 0.87 -1.6
4,553,989 - Psyr_3825 0.87 +2.3
4,553,989 - Psyr_3825 0.87 +1.0
4,553,989 - Psyr_3825 0.87 +1.6
4,553,989 - Psyr_3825 0.87 +3.9
4,553,989 - Psyr_3825 0.87 +0.6

Or see this region's nucleotide sequence