Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3747 and Psyr_3748 are separated by 3 nucleotides Psyr_3748 and Psyr_3749 are separated by 79 nucleotides
Psyr_3747: Psyr_3747 - asparagine synthase (glutamine-hydrolysing), at 4,464,461 to 4,466,233
_3747
Psyr_3748: Psyr_3748 - GCN5-related N-acetyltransferase, at 4,466,237 to 4,467,985
_3748
Psyr_3749: Psyr_3749 - Peptidase M42, at 4,468,065 to 4,469,261
_3749
Position (kb) 4466
4467
4468 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4465.520 kb on + strand, within Psyr_3747 at 4465.520 kb on + strand, within Psyr_3747 at 4465.521 kb on - strand, within Psyr_3747 at 4465.560 kb on + strand, within Psyr_3747 at 4465.599 kb on - strand, within Psyr_3747 at 4465.682 kb on + strand, within Psyr_3747 at 4465.682 kb on + strand, within Psyr_3747 at 4465.682 kb on + strand, within Psyr_3747 at 4466.019 kb on - strand, within Psyr_3747 at 4466.062 kb on + strand at 4466.063 kb on - strand at 4466.258 kb on + strand at 4466.258 kb on + strand at 4466.258 kb on + strand at 4466.258 kb on + strand at 4466.259 kb on - strand at 4466.259 kb on - strand at 4466.260 kb on + strand at 4466.260 kb on + strand at 4466.294 kb on + strand at 4466.295 kb on - strand at 4466.295 kb on - strand at 4466.337 kb on + strand at 4466.337 kb on + strand at 4466.337 kb on + strand at 4466.337 kb on + strand at 4466.337 kb on + strand at 4466.338 kb on - strand at 4466.338 kb on - strand at 4466.465 kb on + strand, within Psyr_3748 at 4466.465 kb on + strand, within Psyr_3748 at 4466.465 kb on + strand, within Psyr_3748 at 4466.465 kb on + strand, within Psyr_3748 at 4466.465 kb on + strand, within Psyr_3748 at 4466.466 kb on - strand, within Psyr_3748 at 4466.466 kb on - strand, within Psyr_3748 at 4466.466 kb on - strand, within Psyr_3748 at 4466.708 kb on + strand, within Psyr_3748 at 4466.708 kb on + strand, within Psyr_3748 at 4466.906 kb on + strand, within Psyr_3748 at 4466.907 kb on - strand, within Psyr_3748 at 4466.907 kb on - strand, within Psyr_3748 at 4466.907 kb on - strand, within Psyr_3748 at 4466.907 kb on - strand, within Psyr_3748 at 4466.955 kb on - strand, within Psyr_3748 at 4467.149 kb on + strand, within Psyr_3748 at 4467.149 kb on + strand, within Psyr_3748 at 4467.150 kb on - strand, within Psyr_3748 at 4467.678 kb on - strand, within Psyr_3748 at 4467.737 kb on - strand, within Psyr_3748 at 4467.831 kb on + strand at 4467.872 kb on + strand at 4467.872 kb on + strand at 4467.901 kb on - strand at 4467.979 kb on + strand at 4467.979 kb on + strand at 4467.979 kb on + strand at 4467.979 kb on + strand at 4467.980 kb on - strand at 4467.980 kb on - strand at 4468.053 kb on + strand at 4468.053 kb on + strand at 4468.054 kb on - strand at 4468.079 kb on + strand at 4468.079 kb on + strand at 4468.101 kb on + strand at 4468.101 kb on + strand at 4468.102 kb on - strand at 4468.102 kb on - strand at 4468.163 kb on + strand at 4468.163 kb on + strand at 4468.163 kb on + strand at 4468.164 kb on - strand at 4468.164 kb on - strand at 4468.164 kb on - strand at 4468.164 kb on - strand at 4468.323 kb on - strand, within Psyr_3749 at 4468.524 kb on + strand, within Psyr_3749 at 4468.524 kb on + strand, within Psyr_3749 at 4468.881 kb on + strand, within Psyr_3749 at 4468.962 kb on + strand, within Psyr_3749 at 4468.962 kb on + strand, within Psyr_3749 at 4468.962 kb on + strand, within Psyr_3749 at 4468.965 kb on + strand, within Psyr_3749 at 4468.965 kb on + strand, within Psyr_3749 at 4468.965 kb on + strand, within Psyr_3749 at 4468.966 kb on - strand, within Psyr_3749 at 4468.966 kb on - strand, within Psyr_3749 at 4468.966 kb on - strand, within Psyr_3749 at 4468.966 kb on - strand, within Psyr_3749 at 4468.966 kb on - strand, within Psyr_3749 at 4468.966 kb on - strand, within Psyr_3749 at 4468.966 kb on - strand, within Psyr_3749
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 4,465,520 + Psyr_3747 0.60 +2.3 4,465,520 + Psyr_3747 0.60 -0.6 4,465,521 - Psyr_3747 0.60 -0.8 4,465,560 + Psyr_3747 0.62 -0.4 4,465,599 - Psyr_3747 0.64 -1.6 4,465,682 + Psyr_3747 0.69 -0.8 4,465,682 + Psyr_3747 0.69 +3.8 4,465,682 + Psyr_3747 0.69 -3.1 4,466,019 - Psyr_3747 0.88 +0.9 4,466,062 + -1.4 4,466,063 - +2.9 4,466,258 + +1.5 4,466,258 + +1.5 4,466,258 + -1.2 4,466,258 + +3.1 4,466,259 - -2.6 4,466,259 - +2.0 4,466,260 + +1.1 4,466,260 + +2.0 4,466,294 + +1.5 4,466,295 - +3.7 4,466,295 - +2.5 4,466,337 + +4.4 4,466,337 + +1.0 4,466,337 + +3.7 4,466,337 + +0.3 4,466,337 + +4.1 4,466,338 - -0.9 4,466,338 - +2.8 4,466,465 + Psyr_3748 0.13 +2.5 4,466,465 + Psyr_3748 0.13 -1.3 4,466,465 + Psyr_3748 0.13 -0.8 4,466,465 + Psyr_3748 0.13 -0.0 4,466,465 + Psyr_3748 0.13 -0.0 4,466,466 - Psyr_3748 0.13 +1.5 4,466,466 - Psyr_3748 0.13 -0.6 4,466,466 - Psyr_3748 0.13 +4.3 4,466,708 + Psyr_3748 0.27 +3.0 4,466,708 + Psyr_3748 0.27 -0.6 4,466,906 + Psyr_3748 0.38 +0.9 4,466,907 - Psyr_3748 0.38 +4.0 4,466,907 - Psyr_3748 0.38 +4.6 4,466,907 - Psyr_3748 0.38 +0.1 4,466,907 - Psyr_3748 0.38 -0.8 4,466,955 - Psyr_3748 0.41 -3.0 4,467,149 + Psyr_3748 0.52 +0.5 4,467,149 + Psyr_3748 0.52 -0.7 4,467,150 - Psyr_3748 0.52 +3.0 4,467,678 - Psyr_3748 0.82 +3.4 4,467,737 - Psyr_3748 0.86 +0.9 4,467,831 + +2.3 4,467,872 + +1.5 4,467,872 + +1.5 4,467,901 - -0.1 4,467,979 + +1.5 4,467,979 + +0.9 4,467,979 + +2.6 4,467,979 + -0.9 4,467,980 - +4.2 4,467,980 - -1.6 4,468,053 + +1.1 4,468,053 + -1.3 4,468,054 - +1.4 4,468,079 + +3.4 4,468,079 + -1.1 4,468,101 + -0.1 4,468,101 + -1.6 4,468,102 - -1.2 4,468,102 - +0.2 4,468,163 + +3.5 4,468,163 + +4.6 4,468,163 + -1.0 4,468,164 - +3.9 4,468,164 - -2.9 4,468,164 - -1.1 4,468,164 - +3.6 4,468,323 - Psyr_3749 0.22 -0.8 4,468,524 + Psyr_3749 0.38 +3.3 4,468,524 + Psyr_3749 0.38 +3.6 4,468,881 + Psyr_3749 0.68 -2.0 4,468,962 + Psyr_3749 0.75 -0.1 4,468,962 + Psyr_3749 0.75 -0.3 4,468,962 + Psyr_3749 0.75 +2.5 4,468,965 + Psyr_3749 0.75 -0.5 4,468,965 + Psyr_3749 0.75 +2.3 4,468,965 + Psyr_3749 0.75 -0.9 4,468,966 - Psyr_3749 0.75 +3.4 4,468,966 - Psyr_3749 0.75 -2.9 4,468,966 - Psyr_3749 0.75 -1.3 4,468,966 - Psyr_3749 0.75 +2.8 4,468,966 - Psyr_3749 0.75 +3.4 4,468,966 - Psyr_3749 0.75 +1.9 4,468,966 - Psyr_3749 0.75 +2.3
Or see this region's nucleotide sequence