Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3731 and Psyr_3732 are separated by 279 nucleotides Psyr_3732 and Psyr_3733 are separated by 180 nucleotides Psyr_3733 and Psyr_3734 are separated by 91 nucleotides
Psyr_3731: Psyr_3731 - conserved hypothetical protein, at 4,438,234 to 4,439,577
_3731
Psyr_3732: Psyr_3732 - hypothetical protein, at 4,439,857 to 4,440,036
_3732
Psyr_3733: Psyr_3733 - Outer membrane autotransporter barrel, at 4,440,217 to 4,443,333
_3733
Psyr_3734: Psyr_3734 - Outer membrane autotransporter barrel, at 4,443,425 to 4,446,430
_3734
Position (kb) 4440
4441
4442
4443
4444 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 4439.326 kb on + strand, within Psyr_3731 at 4439.326 kb on + strand, within Psyr_3731 at 4439.326 kb on + strand, within Psyr_3731 at 4439.327 kb on - strand, within Psyr_3731 at 4439.327 kb on - strand, within Psyr_3731 at 4439.327 kb on - strand, within Psyr_3731 at 4439.352 kb on + strand, within Psyr_3731 at 4439.352 kb on + strand, within Psyr_3731 at 4439.352 kb on + strand, within Psyr_3731 at 4439.352 kb on + strand, within Psyr_3731 at 4439.352 kb on + strand, within Psyr_3731 at 4439.353 kb on - strand, within Psyr_3731 at 4439.353 kb on - strand, within Psyr_3731 at 4439.387 kb on - strand, within Psyr_3731 at 4439.539 kb on + strand at 4439.540 kb on - strand at 4439.603 kb on + strand at 4439.625 kb on - strand at 4439.797 kb on + strand at 4439.797 kb on + strand at 4439.797 kb on + strand at 4439.797 kb on + strand at 4439.797 kb on + strand at 4439.797 kb on + strand at 4439.797 kb on + strand at 4439.797 kb on + strand at 4439.797 kb on + strand at 4439.797 kb on + strand at 4439.797 kb on + strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.798 kb on - strand at 4439.799 kb on + strand at 4439.799 kb on + strand at 4439.800 kb on - strand at 4439.801 kb on + strand at 4439.801 kb on + strand at 4439.801 kb on + strand at 4439.801 kb on + strand at 4439.801 kb on + strand at 4439.801 kb on + strand at 4439.802 kb on - strand at 4439.802 kb on - strand at 4439.802 kb on - strand at 4439.802 kb on - strand at 4439.802 kb on - strand at 4439.802 kb on - strand at 4439.837 kb on - strand at 4439.837 kb on - strand at 4439.861 kb on + strand at 4440.169 kb on + strand at 4440.169 kb on + strand at 4440.170 kb on - strand at 4440.170 kb on - strand at 4440.170 kb on - strand at 4440.178 kb on - strand at 4440.178 kb on - strand at 4440.192 kb on + strand at 4440.192 kb on + strand at 4440.284 kb on + strand at 4440.285 kb on - strand at 4440.285 kb on - strand at 4440.373 kb on + strand at 4440.373 kb on + strand at 4440.373 kb on + strand at 4440.373 kb on + strand at 4440.374 kb on - strand at 4440.374 kb on - strand at 4440.374 kb on - strand at 4440.374 kb on - strand at 4440.374 kb on - strand at 4440.374 kb on - strand at 4440.374 kb on - strand at 4440.374 kb on - strand at 4440.374 kb on - strand at 4440.611 kb on + strand, within Psyr_3733 at 4440.611 kb on + strand, within Psyr_3733 at 4440.611 kb on + strand, within Psyr_3733 at 4440.612 kb on - strand, within Psyr_3733 at 4440.612 kb on - strand, within Psyr_3733 at 4440.821 kb on + strand, within Psyr_3733 at 4440.836 kb on + strand, within Psyr_3733 at 4440.836 kb on + strand, within Psyr_3733 at 4440.837 kb on - strand, within Psyr_3733 at 4441.073 kb on + strand, within Psyr_3733 at 4441.074 kb on - strand, within Psyr_3733 at 4441.320 kb on + strand, within Psyr_3733 at 4441.320 kb on + strand, within Psyr_3733 at 4441.321 kb on - strand, within Psyr_3733 at 4441.355 kb on + strand, within Psyr_3733 at 4441.355 kb on + strand, within Psyr_3733 at 4441.355 kb on + strand, within Psyr_3733 at 4441.355 kb on + strand, within Psyr_3733 at 4441.355 kb on + strand, within Psyr_3733 at 4441.356 kb on - strand, within Psyr_3733 at 4441.356 kb on - strand, within Psyr_3733 at 4441.356 kb on - strand, within Psyr_3733 at 4441.356 kb on - strand, within Psyr_3733 at 4441.382 kb on + strand, within Psyr_3733 at 4441.382 kb on + strand, within Psyr_3733 at 4441.382 kb on + strand, within Psyr_3733 at 4441.383 kb on - strand, within Psyr_3733 at 4441.383 kb on - strand, within Psyr_3733 at 4441.383 kb on - strand, within Psyr_3733 at 4441.383 kb on - strand, within Psyr_3733 at 4441.476 kb on + strand, within Psyr_3733 at 4441.558 kb on - strand, within Psyr_3733 at 4441.592 kb on + strand, within Psyr_3733 at 4441.593 kb on - strand, within Psyr_3733 at 4441.799 kb on + strand, within Psyr_3733 at 4441.799 kb on + strand, within Psyr_3733 at 4441.799 kb on + strand, within Psyr_3733 at 4441.800 kb on - strand, within Psyr_3733 at 4441.800 kb on - strand, within Psyr_3733 at 4442.085 kb on - strand, within Psyr_3733 at 4442.162 kb on + strand, within Psyr_3733 at 4442.163 kb on - strand, within Psyr_3733 at 4442.163 kb on - strand, within Psyr_3733 at 4442.288 kb on + strand, within Psyr_3733 at 4442.288 kb on + strand, within Psyr_3733 at 4442.288 kb on + strand, within Psyr_3733 at 4442.288 kb on + strand, within Psyr_3733 at 4442.288 kb on + strand, within Psyr_3733 at 4442.289 kb on - strand, within Psyr_3733 at 4442.331 kb on - strand, within Psyr_3733 at 4442.364 kb on - strand, within Psyr_3733 at 4442.364 kb on - strand, within Psyr_3733 at 4442.489 kb on + strand, within Psyr_3733 at 4442.489 kb on + strand, within Psyr_3733 at 4442.489 kb on + strand, within Psyr_3733 at 4442.552 kb on + strand, within Psyr_3733 at 4442.741 kb on + strand, within Psyr_3733 at 4442.741 kb on + strand, within Psyr_3733 at 4442.741 kb on + strand, within Psyr_3733 at 4442.822 kb on + strand, within Psyr_3733 at 4442.822 kb on + strand, within Psyr_3733 at 4442.823 kb on - strand, within Psyr_3733 at 4442.966 kb on + strand, within Psyr_3733 at 4442.966 kb on + strand, within Psyr_3733 at 4442.978 kb on + strand, within Psyr_3733 at 4443.010 kb on + strand, within Psyr_3733 at 4443.011 kb on - strand, within Psyr_3733 at 4443.047 kb on + strand at 4443.093 kb on - strand at 4443.104 kb on + strand at 4443.104 kb on + strand at 4443.105 kb on - strand at 4443.105 kb on - strand at 4443.200 kb on + strand at 4443.200 kb on + strand at 4443.200 kb on + strand at 4443.200 kb on + strand at 4443.200 kb on + strand at 4443.200 kb on + strand at 4443.200 kb on + strand at 4443.201 kb on - strand at 4443.201 kb on - strand at 4443.201 kb on - strand at 4443.236 kb on + strand at 4443.349 kb on + strand at 4443.349 kb on + strand at 4443.350 kb on - strand at 4443.350 kb on - strand at 4443.409 kb on + strand at 4443.409 kb on + strand at 4443.409 kb on + strand at 4443.410 kb on - strand at 4443.419 kb on + strand at 4443.426 kb on + strand at 4443.426 kb on + strand at 4443.426 kb on + strand at 4443.426 kb on + strand at 4443.427 kb on - strand at 4443.427 kb on - strand at 4443.439 kb on + strand at 4443.439 kb on + strand at 4443.440 kb on - strand at 4443.440 kb on - strand at 4443.492 kb on + strand at 4443.820 kb on - strand, within Psyr_3734 at 4443.820 kb on - strand, within Psyr_3734 at 4443.820 kb on - strand, within Psyr_3734 at 4444.030 kb on - strand, within Psyr_3734 at 4444.044 kb on + strand, within Psyr_3734 at 4444.044 kb on + strand, within Psyr_3734 at 4444.045 kb on - strand, within Psyr_3734 at 4444.186 kb on - strand, within Psyr_3734
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 4,439,326 + Psyr_3731 0.81 -1.1 4,439,326 + Psyr_3731 0.81 -1.4 4,439,326 + Psyr_3731 0.81 -0.8 4,439,327 - Psyr_3731 0.81 -0.5 4,439,327 - Psyr_3731 0.81 +3.5 4,439,327 - Psyr_3731 0.81 -4.5 4,439,352 + Psyr_3731 0.83 -1.2 4,439,352 + Psyr_3731 0.83 +3.5 4,439,352 + Psyr_3731 0.83 -1.7 4,439,352 + Psyr_3731 0.83 +0.2 4,439,352 + Psyr_3731 0.83 +1.5 4,439,353 - Psyr_3731 0.83 -0.7 4,439,353 - Psyr_3731 0.83 -1.7 4,439,387 - Psyr_3731 0.86 -1.5 4,439,539 + -1.2 4,439,540 - +1.9 4,439,603 + +3.5 4,439,625 - -0.8 4,439,797 + -0.9 4,439,797 + +2.5 4,439,797 + +0.1 4,439,797 + +3.1 4,439,797 + -0.2 4,439,797 + +2.9 4,439,797 + +0.2 4,439,797 + +3.1 4,439,797 + -0.5 4,439,797 + -0.3 4,439,797 + -0.3 4,439,798 - +0.1 4,439,798 - -0.1 4,439,798 - +3.6 4,439,798 - -3.8 4,439,798 - -1.8 4,439,798 - +3.8 4,439,798 - +0.4 4,439,798 - +2.5 4,439,798 - -4.3 4,439,798 - +3.8 4,439,798 - -2.0 4,439,798 - +1.5 4,439,798 - -4.1 4,439,798 - -1.5 4,439,798 - -2.4 4,439,799 + -0.2 4,439,799 + +0.9 4,439,800 - +2.5 4,439,801 + +0.1 4,439,801 + +3.6 4,439,801 + -1.6 4,439,801 + +0.9 4,439,801 + +0.9 4,439,801 + -0.4 4,439,802 - -3.9 4,439,802 - +2.3 4,439,802 - -3.8 4,439,802 - +4.3 4,439,802 - -1.6 4,439,802 - +0.9 4,439,837 - -2.4 4,439,837 - +3.1 4,439,861 + +4.5 4,440,169 + +4.0 4,440,169 + +1.5 4,440,170 - +0.1 4,440,170 - +1.4 4,440,170 - +0.3 4,440,178 - -1.6 4,440,178 - -0.2 4,440,192 + +0.4 4,440,192 + -0.8 4,440,284 + +0.5 4,440,285 - +0.0 4,440,285 - +0.0 4,440,373 + +0.5 4,440,373 + +2.3 4,440,373 + -0.1 4,440,373 + -1.8 4,440,374 - -1.1 4,440,374 - -0.5 4,440,374 - +3.3 4,440,374 - -1.1 4,440,374 - +1.4 4,440,374 - -0.1 4,440,374 - +0.5 4,440,374 - +3.3 4,440,374 - +3.4 4,440,611 + Psyr_3733 0.13 -0.2 4,440,611 + Psyr_3733 0.13 +0.7 4,440,611 + Psyr_3733 0.13 -0.2 4,440,612 - Psyr_3733 0.13 -1.3 4,440,612 - Psyr_3733 0.13 +0.5 4,440,821 + Psyr_3733 0.19 -1.4 4,440,836 + Psyr_3733 0.20 +0.1 4,440,836 + Psyr_3733 0.20 +1.8 4,440,837 - Psyr_3733 0.20 -0.5 4,441,073 + Psyr_3733 0.27 -0.1 4,441,074 - Psyr_3733 0.27 -2.1 4,441,320 + Psyr_3733 0.35 -0.8 4,441,320 + Psyr_3733 0.35 -0.9 4,441,321 - Psyr_3733 0.35 -0.3 4,441,355 + Psyr_3733 0.37 -1.1 4,441,355 + Psyr_3733 0.37 +1.5 4,441,355 + Psyr_3733 0.37 +4.1 4,441,355 + Psyr_3733 0.37 +2.3 4,441,355 + Psyr_3733 0.37 -0.5 4,441,356 - Psyr_3733 0.37 -3.1 4,441,356 - Psyr_3733 0.37 -4.0 4,441,356 - Psyr_3733 0.37 +2.8 4,441,356 - Psyr_3733 0.37 -3.5 4,441,382 + Psyr_3733 0.37 -0.6 4,441,382 + Psyr_3733 0.37 +2.8 4,441,382 + Psyr_3733 0.37 -1.5 4,441,383 - Psyr_3733 0.37 +0.9 4,441,383 - Psyr_3733 0.37 -3.1 4,441,383 - Psyr_3733 0.37 -2.6 4,441,383 - Psyr_3733 0.37 +0.9 4,441,476 + Psyr_3733 0.40 +1.9 4,441,558 - Psyr_3733 0.43 -2.1 4,441,592 + Psyr_3733 0.44 +0.2 4,441,593 - Psyr_3733 0.44 +4.3 4,441,799 + Psyr_3733 0.51 -3.2 4,441,799 + Psyr_3733 0.51 -2.0 4,441,799 + Psyr_3733 0.51 +0.6 4,441,800 - Psyr_3733 0.51 +2.3 4,441,800 - Psyr_3733 0.51 -3.1 4,442,085 - Psyr_3733 0.60 +0.2 4,442,162 + Psyr_3733 0.62 -0.9 4,442,163 - Psyr_3733 0.62 +0.9 4,442,163 - Psyr_3733 0.62 +3.8 4,442,288 + Psyr_3733 0.66 -1.5 4,442,288 + Psyr_3733 0.66 +2.3 4,442,288 + Psyr_3733 0.66 -2.3 4,442,288 + Psyr_3733 0.66 -1.5 4,442,288 + Psyr_3733 0.66 +0.6 4,442,289 - Psyr_3733 0.66 -1.3 4,442,331 - Psyr_3733 0.68 -1.0 4,442,364 - Psyr_3733 0.69 +3.9 4,442,364 - Psyr_3733 0.69 -0.7 4,442,489 + Psyr_3733 0.73 -0.8 4,442,489 + Psyr_3733 0.73 -2.6 4,442,489 + Psyr_3733 0.73 -0.4 4,442,552 + Psyr_3733 0.75 +2.8 4,442,741 + Psyr_3733 0.81 +4.9 4,442,741 + Psyr_3733 0.81 +3.4 4,442,741 + Psyr_3733 0.81 -3.0 4,442,822 + Psyr_3733 0.84 +2.3 4,442,822 + Psyr_3733 0.84 +2.8 4,442,823 - Psyr_3733 0.84 +3.5 4,442,966 + Psyr_3733 0.88 -4.0 4,442,966 + Psyr_3733 0.88 -0.7 4,442,978 + Psyr_3733 0.89 +3.9 4,443,010 + Psyr_3733 0.90 +1.9 4,443,011 - Psyr_3733 0.90 -0.4 4,443,047 + -2.1 4,443,093 - -1.8 4,443,104 + -0.9 4,443,104 + +2.3 4,443,105 - +0.9 4,443,105 - -0.3 4,443,200 + +3.4 4,443,200 + +4.3 4,443,200 + -1.2 4,443,200 + +1.5 4,443,200 + +0.1 4,443,200 + +1.2 4,443,200 + -0.1 4,443,201 - +0.4 4,443,201 - +2.5 4,443,201 - -1.8 4,443,236 + +2.3 4,443,349 + -0.9 4,443,349 + -0.7 4,443,350 - -1.6 4,443,350 - -0.8 4,443,409 + +3.4 4,443,409 + +2.3 4,443,409 + -1.4 4,443,410 - -1.3 4,443,419 + -2.2 4,443,426 + +3.5 4,443,426 + +3.9 4,443,426 + +2.5 4,443,426 + -0.5 4,443,427 - -0.6 4,443,427 - +2.9 4,443,439 + -1.5 4,443,439 + +4.8 4,443,440 - -0.2 4,443,440 - +0.9 4,443,492 + +1.9 4,443,820 - Psyr_3734 0.13 +2.3 4,443,820 - Psyr_3734 0.13 +3.6 4,443,820 - Psyr_3734 0.13 +3.9 4,444,030 - Psyr_3734 0.20 +1.9 4,444,044 + Psyr_3734 0.21 -0.4 4,444,044 + Psyr_3734 0.21 -1.9 4,444,045 - Psyr_3734 0.21 -2.6 4,444,186 - Psyr_3734 0.25 -1.3
Or see this region's nucleotide sequence