Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3683

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3682 and Psyr_3683 are separated by 328 nucleotidesPsyr_3683 and Psyr_3684 are separated by 89 nucleotidesPsyr_3684 and Psyr_3685 are separated by 75 nucleotides Psyr_3682: Psyr_3682 - L-sorbosone dehydrogenase, at 4,368,342 to 4,369,670 _3682 Psyr_3683: Psyr_3683 - NLP/P60, at 4,369,999 to 4,370,544 _3683 Psyr_3684: Psyr_3684 - NLP/P60, at 4,370,634 to 4,371,362 _3684 Psyr_3685: Psyr_3685 - Silent information regulator protein Sir2, at 4,371,438 to 4,372,181 _3685 Position (kb) 4369 4370 4371Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4368.999 kb on + strand, within Psyr_3682at 4368.999 kb on + strand, within Psyr_3682at 4369.000 kb on - strand, within Psyr_3682at 4369.000 kb on - strand, within Psyr_3682at 4369.000 kb on - strand, within Psyr_3682at 4369.000 kb on - strand, within Psyr_3682at 4369.218 kb on + strand, within Psyr_3682at 4369.218 kb on + strand, within Psyr_3682at 4369.219 kb on - strand, within Psyr_3682at 4369.248 kb on + strand, within Psyr_3682at 4369.248 kb on + strand, within Psyr_3682at 4369.249 kb on - strand, within Psyr_3682at 4369.260 kb on + strand, within Psyr_3682at 4369.260 kb on + strand, within Psyr_3682at 4369.261 kb on - strand, within Psyr_3682at 4369.266 kb on + strand, within Psyr_3682at 4369.266 kb on + strand, within Psyr_3682at 4369.266 kb on + strand, within Psyr_3682at 4369.266 kb on + strand, within Psyr_3682at 4369.266 kb on + strand, within Psyr_3682at 4369.267 kb on - strand, within Psyr_3682at 4369.267 kb on - strand, within Psyr_3682at 4369.267 kb on - strand, within Psyr_3682at 4369.270 kb on - strand, within Psyr_3682at 4369.470 kb on + strand, within Psyr_3682at 4369.708 kb on + strandat 4369.709 kb on - strandat 4369.709 kb on - strandat 4369.709 kb on - strandat 4369.863 kb on + strandat 4369.864 kb on - strandat 4369.893 kb on + strandat 4369.918 kb on + strandat 4369.919 kb on - strandat 4369.919 kb on - strandat 4369.919 kb on - strandat 4370.054 kb on + strand, within Psyr_3683at 4370.055 kb on - strand, within Psyr_3683at 4370.055 kb on - strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.226 kb on + strand, within Psyr_3683at 4370.300 kb on + strand, within Psyr_3683at 4370.300 kb on + strand, within Psyr_3683at 4370.300 kb on + strand, within Psyr_3683at 4370.301 kb on - strand, within Psyr_3683at 4370.305 kb on + strand, within Psyr_3683at 4370.305 kb on + strand, within Psyr_3683at 4370.306 kb on - strand, within Psyr_3683at 4370.306 kb on - strand, within Psyr_3683at 4370.307 kb on + strand, within Psyr_3683at 4370.544 kb on + strandat 4370.558 kb on + strandat 4370.573 kb on + strandat 4370.574 kb on - strandat 4370.574 kb on - strandat 4370.631 kb on + strandat 4370.632 kb on - strandat 4370.635 kb on + strandat 4370.635 kb on + strandat 4370.635 kb on + strandat 4370.636 kb on - strandat 4370.667 kb on - strandat 4370.713 kb on - strand, within Psyr_3684at 4370.855 kb on - strand, within Psyr_3684at 4371.130 kb on + strand, within Psyr_3684at 4371.290 kb on + strandat 4371.290 kb on + strandat 4371.291 kb on - strandat 4371.382 kb on + strandat 4371.386 kb on + strandat 4371.386 kb on + strandat 4371.386 kb on + strandat 4371.386 kb on + strandat 4371.400 kb on + strandat 4371.401 kb on - strandat 4371.410 kb on - strandat 4371.450 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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4,368,999 + Psyr_3682 0.49 -2.3
4,368,999 + Psyr_3682 0.49 -1.3
4,369,000 - Psyr_3682 0.50 +0.1
4,369,000 - Psyr_3682 0.50 +3.9
4,369,000 - Psyr_3682 0.50 +1.5
4,369,000 - Psyr_3682 0.50 -1.6
4,369,218 + Psyr_3682 0.66 -0.1
4,369,218 + Psyr_3682 0.66 +1.5
4,369,219 - Psyr_3682 0.66 -3.1
4,369,248 + Psyr_3682 0.68 +2.3
4,369,248 + Psyr_3682 0.68 +1.9
4,369,249 - Psyr_3682 0.68 +2.9
4,369,260 + Psyr_3682 0.69 -1.4
4,369,260 + Psyr_3682 0.69 +4.3
4,369,261 - Psyr_3682 0.69 +2.9
4,369,266 + Psyr_3682 0.70 +4.2
4,369,266 + Psyr_3682 0.70 +1.9
4,369,266 + Psyr_3682 0.70 +2.8
4,369,266 + Psyr_3682 0.70 +1.5
4,369,266 + Psyr_3682 0.70 -2.3
4,369,267 - Psyr_3682 0.70 -0.1
4,369,267 - Psyr_3682 0.70 -1.6
4,369,267 - Psyr_3682 0.70 -1.2
4,369,270 - Psyr_3682 0.70 -0.5
4,369,470 + Psyr_3682 0.85 -0.9
4,369,708 + -0.1
4,369,709 - +0.9
4,369,709 - +1.9
4,369,709 - -4.4
4,369,863 + -1.6
4,369,864 - +2.3
4,369,893 + -1.3
4,369,918 + +1.5
4,369,919 - -1.3
4,369,919 - +0.7
4,369,919 - +0.6
4,370,054 + Psyr_3683 0.10 +0.5
4,370,055 - Psyr_3683 0.10 +0.9
4,370,055 - Psyr_3683 0.10 -3.1
4,370,144 + Psyr_3683 0.27 +1.5
4,370,144 + Psyr_3683 0.27 +0.9
4,370,144 + Psyr_3683 0.27 -3.3
4,370,144 + Psyr_3683 0.27 +1.5
4,370,144 + Psyr_3683 0.27 +0.9
4,370,144 + Psyr_3683 0.27 +0.1
4,370,144 + Psyr_3683 0.27 +0.9
4,370,144 + Psyr_3683 0.27 -0.1
4,370,144 + Psyr_3683 0.27 -0.9
4,370,144 + Psyr_3683 0.27 +3.5
4,370,144 + Psyr_3683 0.27 -1.7
4,370,144 + Psyr_3683 0.27 -1.8
4,370,144 + Psyr_3683 0.27 +0.3
4,370,144 + Psyr_3683 0.27 +3.4
4,370,145 - Psyr_3683 0.27 +3.1
4,370,145 - Psyr_3683 0.27 +3.6
4,370,145 - Psyr_3683 0.27 -1.8
4,370,145 - Psyr_3683 0.27 +2.5
4,370,145 - Psyr_3683 0.27 +2.7
4,370,145 - Psyr_3683 0.27 -0.8
4,370,145 - Psyr_3683 0.27 +1.5
4,370,145 - Psyr_3683 0.27 +0.3
4,370,145 - Psyr_3683 0.27 -2.5
4,370,226 + Psyr_3683 0.42 +2.5
4,370,300 + Psyr_3683 0.55 +0.8
4,370,300 + Psyr_3683 0.55 +3.9
4,370,300 + Psyr_3683 0.55 +3.5
4,370,301 - Psyr_3683 0.55 +2.7
4,370,305 + Psyr_3683 0.56 -1.5
4,370,305 + Psyr_3683 0.56 +1.9
4,370,306 - Psyr_3683 0.56 +1.4
4,370,306 - Psyr_3683 0.56 +3.3
4,370,307 + Psyr_3683 0.56 +0.3
4,370,544 + +0.9
4,370,558 + -1.3
4,370,573 + -1.3
4,370,574 - +4.4
4,370,574 - +2.3
4,370,631 + +4.2
4,370,632 - +2.7
4,370,635 + +1.5
4,370,635 + +1.5
4,370,635 + +1.9
4,370,636 - -0.9
4,370,667 - -1.1
4,370,713 - Psyr_3684 0.11 +2.3
4,370,855 - Psyr_3684 0.30 +0.9
4,371,130 + Psyr_3684 0.68 +1.9
4,371,290 + -0.8
4,371,290 + +2.5
4,371,291 - -1.2
4,371,382 + +0.9
4,371,386 + -1.7
4,371,386 + -1.5
4,371,386 + +0.8
4,371,386 + +1.9
4,371,400 + -0.2
4,371,401 - +0.9
4,371,410 - +1.9
4,371,450 + -1.4

Or see this region's nucleotide sequence