Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3657

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3656 and Psyr_3657 overlap by 8 nucleotidesPsyr_3657 and Psyr_3658 are separated by 3 nucleotides Psyr_3656: Psyr_3656 - ABC transporter, transmembrane region:ABC transporter, at 4,342,921 to 4,344,747 _3656 Psyr_3657: Psyr_3657 - DSBA oxidoreductase, at 4,344,740 to 4,345,372 _3657 Psyr_3658: Psyr_3658 - Rhodanese-like protein, at 4,345,376 to 4,346,329 _3658 Position (kb) 4344 4345 4346Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 4343.741 kb on + strand, within Psyr_3656at 4343.741 kb on + strand, within Psyr_3656at 4343.741 kb on + strand, within Psyr_3656at 4343.742 kb on - strand, within Psyr_3656at 4343.742 kb on - strand, within Psyr_3656at 4343.744 kb on + strand, within Psyr_3656at 4343.744 kb on + strand, within Psyr_3656at 4343.745 kb on - strand, within Psyr_3656at 4343.750 kb on + strand, within Psyr_3656at 4343.751 kb on - strand, within Psyr_3656at 4343.751 kb on - strand, within Psyr_3656at 4343.798 kb on + strand, within Psyr_3656at 4343.851 kb on - strand, within Psyr_3656at 4343.948 kb on + strand, within Psyr_3656at 4343.949 kb on - strand, within Psyr_3656at 4343.949 kb on - strand, within Psyr_3656at 4344.069 kb on + strand, within Psyr_3656at 4344.069 kb on + strand, within Psyr_3656at 4344.069 kb on + strand, within Psyr_3656at 4344.069 kb on + strand, within Psyr_3656at 4344.069 kb on + strand, within Psyr_3656at 4344.069 kb on + strand, within Psyr_3656at 4344.070 kb on - strand, within Psyr_3656at 4344.070 kb on - strand, within Psyr_3656at 4344.070 kb on - strand, within Psyr_3656at 4344.070 kb on - strand, within Psyr_3656at 4344.070 kb on - strand, within Psyr_3656at 4344.321 kb on - strand, within Psyr_3656at 4344.369 kb on + strand, within Psyr_3656at 4344.374 kb on + strand, within Psyr_3656at 4344.375 kb on - strand, within Psyr_3656at 4344.480 kb on - strand, within Psyr_3656at 4344.509 kb on - strand, within Psyr_3656at 4344.509 kb on - strand, within Psyr_3656at 4345.020 kb on + strand, within Psyr_3657at 4345.020 kb on + strand, within Psyr_3657at 4345.020 kb on + strand, within Psyr_3657at 4345.021 kb on - strand, within Psyr_3657at 4345.021 kb on - strand, within Psyr_3657at 4345.108 kb on + strand, within Psyr_3657at 4345.109 kb on - strand, within Psyr_3657at 4345.117 kb on - strand, within Psyr_3657at 4345.200 kb on + strand, within Psyr_3657at 4345.201 kb on - strand, within Psyr_3657at 4345.353 kb on + strandat 4345.353 kb on + strandat 4345.353 kb on + strandat 4345.353 kb on + strandat 4345.353 kb on + strandat 4345.354 kb on - strandat 4345.354 kb on - strandat 4345.354 kb on - strandat 4345.354 kb on - strandat 4345.354 kb on - strandat 4345.354 kb on - strandat 4345.398 kb on + strandat 4345.399 kb on - strandat 4345.399 kb on - strandat 4345.399 kb on - strandat 4345.530 kb on + strand, within Psyr_3658at 4345.530 kb on + strand, within Psyr_3658at 4345.530 kb on + strand, within Psyr_3658at 4345.530 kb on + strand, within Psyr_3658at 4345.590 kb on + strand, within Psyr_3658at 4345.591 kb on - strand, within Psyr_3658at 4345.591 kb on - strand, within Psyr_3658at 4345.689 kb on + strand, within Psyr_3658at 4345.689 kb on + strand, within Psyr_3658at 4345.716 kb on + strand, within Psyr_3658at 4345.716 kb on + strand, within Psyr_3658at 4345.716 kb on + strand, within Psyr_3658at 4345.717 kb on - strand, within Psyr_3658at 4345.717 kb on - strand, within Psyr_3658at 4345.717 kb on - strand, within Psyr_3658at 4345.717 kb on - strand, within Psyr_3658at 4345.717 kb on - strand, within Psyr_3658at 4345.717 kb on - strand, within Psyr_3658at 4345.746 kb on + strand, within Psyr_3658at 4345.746 kb on + strand, within Psyr_3658at 4345.746 kb on + strand, within Psyr_3658at 4345.747 kb on - strand, within Psyr_3658at 4345.747 kb on - strand, within Psyr_3658at 4345.747 kb on - strand, within Psyr_3658at 4345.747 kb on - strand, within Psyr_3658at 4345.833 kb on + strand, within Psyr_3658at 4345.833 kb on + strand, within Psyr_3658at 4345.833 kb on + strand, within Psyr_3658at 4345.833 kb on + strand, within Psyr_3658at 4345.834 kb on - strand, within Psyr_3658at 4345.906 kb on - strand, within Psyr_3658at 4345.906 kb on - strand, within Psyr_3658at 4345.977 kb on + strand, within Psyr_3658at 4345.977 kb on + strand, within Psyr_3658at 4345.977 kb on + strand, within Psyr_3658at 4345.977 kb on + strand, within Psyr_3658at 4345.978 kb on - strand, within Psyr_3658at 4345.978 kb on - strand, within Psyr_3658at 4345.978 kb on - strand, within Psyr_3658at 4345.978 kb on - strand, within Psyr_3658at 4345.978 kb on - strand, within Psyr_3658at 4345.981 kb on + strand, within Psyr_3658at 4345.981 kb on + strand, within Psyr_3658at 4346.059 kb on - strand, within Psyr_3658at 4346.283 kb on + strandat 4346.283 kb on + strandat 4346.284 kb on - strandat 4346.284 kb on - strandat 4346.284 kb on - strandat 4346.284 kb on - strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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4,343,741 + Psyr_3656 0.45 +2.9
4,343,741 + Psyr_3656 0.45 +0.8
4,343,741 + Psyr_3656 0.45 -2.5
4,343,742 - Psyr_3656 0.45 -1.4
4,343,742 - Psyr_3656 0.45 +2.7
4,343,744 + Psyr_3656 0.45 +1.5
4,343,744 + Psyr_3656 0.45 +1.5
4,343,745 - Psyr_3656 0.45 +0.8
4,343,750 + Psyr_3656 0.45 -1.1
4,343,751 - Psyr_3656 0.45 +0.7
4,343,751 - Psyr_3656 0.45 -2.7
4,343,798 + Psyr_3656 0.48 -1.5
4,343,851 - Psyr_3656 0.51 +3.1
4,343,948 + Psyr_3656 0.56 -1.0
4,343,949 - Psyr_3656 0.56 -0.1
4,343,949 - Psyr_3656 0.56 -0.1
4,344,069 + Psyr_3656 0.63 -0.5
4,344,069 + Psyr_3656 0.63 +2.2
4,344,069 + Psyr_3656 0.63 -4.2
4,344,069 + Psyr_3656 0.63 -3.8
4,344,069 + Psyr_3656 0.63 +3.1
4,344,069 + Psyr_3656 0.63 -0.1
4,344,070 - Psyr_3656 0.63 +4.3
4,344,070 - Psyr_3656 0.63 -1.3
4,344,070 - Psyr_3656 0.63 +2.2
4,344,070 - Psyr_3656 0.63 +4.0
4,344,070 - Psyr_3656 0.63 -3.0
4,344,321 - Psyr_3656 0.77 +3.8
4,344,369 + Psyr_3656 0.79 -0.1
4,344,374 + Psyr_3656 0.80 -2.0
4,344,375 - Psyr_3656 0.80 +2.7
4,344,480 - Psyr_3656 0.85 -0.2
4,344,509 - Psyr_3656 0.87 -2.5
4,344,509 - Psyr_3656 0.87 +1.9
4,345,020 + Psyr_3657 0.44 +4.1
4,345,020 + Psyr_3657 0.44 -0.7
4,345,020 + Psyr_3657 0.44 +3.9
4,345,021 - Psyr_3657 0.44 +4.4
4,345,021 - Psyr_3657 0.44 -0.3
4,345,108 + Psyr_3657 0.58 -1.1
4,345,109 - Psyr_3657 0.58 +2.5
4,345,117 - Psyr_3657 0.60 +3.8
4,345,200 + Psyr_3657 0.73 -0.7
4,345,201 - Psyr_3657 0.73 +3.2
4,345,353 + +1.7
4,345,353 + -0.7
4,345,353 + +0.7
4,345,353 + +0.9
4,345,353 + +2.2
4,345,354 - +1.5
4,345,354 - -1.5
4,345,354 - -0.7
4,345,354 - -2.1
4,345,354 - +1.5
4,345,354 - +1.5
4,345,398 + +4.3
4,345,399 - -0.6
4,345,399 - -0.3
4,345,399 - -0.8
4,345,530 + Psyr_3658 0.16 -1.0
4,345,530 + Psyr_3658 0.16 +4.6
4,345,530 + Psyr_3658 0.16 +3.5
4,345,530 + Psyr_3658 0.16 +1.5
4,345,590 + Psyr_3658 0.22 -1.0
4,345,591 - Psyr_3658 0.23 -0.2
4,345,591 - Psyr_3658 0.23 +0.9
4,345,689 + Psyr_3658 0.33 +1.9
4,345,689 + Psyr_3658 0.33 -2.6
4,345,716 + Psyr_3658 0.36 -4.8
4,345,716 + Psyr_3658 0.36 -2.0
4,345,716 + Psyr_3658 0.36 -1.4
4,345,717 - Psyr_3658 0.36 +0.7
4,345,717 - Psyr_3658 0.36 -0.3
4,345,717 - Psyr_3658 0.36 -0.7
4,345,717 - Psyr_3658 0.36 -5.2
4,345,717 - Psyr_3658 0.36 -1.7
4,345,717 - Psyr_3658 0.36 -1.4
4,345,746 + Psyr_3658 0.39 -3.0
4,345,746 + Psyr_3658 0.39 +1.9
4,345,746 + Psyr_3658 0.39 -1.5
4,345,747 - Psyr_3658 0.39 +2.2
4,345,747 - Psyr_3658 0.39 +1.9
4,345,747 - Psyr_3658 0.39 +2.5
4,345,747 - Psyr_3658 0.39 -1.3
4,345,833 + Psyr_3658 0.48 -0.4
4,345,833 + Psyr_3658 0.48 +4.0
4,345,833 + Psyr_3658 0.48 +2.5
4,345,833 + Psyr_3658 0.48 +0.9
4,345,834 - Psyr_3658 0.48 +3.1
4,345,906 - Psyr_3658 0.56 -3.4
4,345,906 - Psyr_3658 0.56 +0.5
4,345,977 + Psyr_3658 0.63 +2.2
4,345,977 + Psyr_3658 0.63 -1.5
4,345,977 + Psyr_3658 0.63 +2.2
4,345,977 + Psyr_3658 0.63 +1.9
4,345,978 - Psyr_3658 0.63 +3.9
4,345,978 - Psyr_3658 0.63 +1.5
4,345,978 - Psyr_3658 0.63 +3.2
4,345,978 - Psyr_3658 0.63 +3.5
4,345,978 - Psyr_3658 0.63 -1.1
4,345,981 + Psyr_3658 0.63 -1.1
4,345,981 + Psyr_3658 0.63 +3.4
4,346,059 - Psyr_3658 0.72 +1.9
4,346,283 + +2.7
4,346,283 + +3.1
4,346,284 - -4.1
4,346,284 - +1.5
4,346,284 - -2.3
4,346,284 - -1.7
4,346,331 + -3.8
4,346,331 + -1.7
4,346,331 + -2.1
4,346,331 + -2.7
4,346,331 + +4.7
4,346,331 + +2.5
4,346,331 + +0.3
4,346,331 + -0.6
4,346,331 + -0.4
4,346,331 + -0.8
4,346,331 + +4.0
4,346,331 + +3.6
4,346,331 + -1.2
4,346,331 + -2.5
4,346,331 + +0.2
4,346,331 + +1.9
4,346,331 + -3.1
4,346,331 + -1.5
4,346,331 + +1.2
4,346,331 + +1.9
4,346,332 - +1.5
4,346,332 - -0.7
4,346,332 - +0.5
4,346,332 - -1.1
4,346,332 - -0.4
4,346,332 - +2.2
4,346,332 - +2.7
4,346,332 - -2.8
4,346,332 - -3.8
4,346,332 - -4.5
4,346,332 - +2.9
4,346,332 - +3.2
4,346,332 - +2.5
4,346,332 - +1.9
4,346,332 - +2.2
4,346,332 - +3.7
4,346,332 - +1.1
4,346,332 - +3.1

Or see this region's nucleotide sequence