Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3614

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3612 and Psyr_3613 are separated by 4 nucleotidesPsyr_3613 and Psyr_3614 are separated by 57 nucleotidesPsyr_3614 and Psyr_3615 are separated by 188 nucleotides Psyr_3612: Psyr_3612 - Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal, at 4,295,384 to 4,297,774 _3612 Psyr_3613: Psyr_3613 - Glutathione peroxidase, at 4,297,779 to 4,298,264 _3613 Psyr_3614: Psyr_3614 - Protein of unknown function DUF25, at 4,298,322 to 4,298,717 _3614 Psyr_3615: Psyr_3615 - Aminotransferase, class I and II, at 4,298,906 to 4,300,117 _3615 Position (kb) 4298 4299Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4297.335 kb on + strand, within Psyr_3612at 4297.384 kb on + strand, within Psyr_3612at 4297.385 kb on - strand, within Psyr_3612at 4298.070 kb on - strand, within Psyr_3613at 4298.105 kb on + strand, within Psyr_3613at 4298.107 kb on + strand, within Psyr_3613at 4298.108 kb on - strand, within Psyr_3613at 4298.137 kb on + strand, within Psyr_3613at 4298.137 kb on + strand, within Psyr_3613at 4298.137 kb on + strand, within Psyr_3613at 4298.137 kb on + strand, within Psyr_3613at 4298.137 kb on + strand, within Psyr_3613at 4298.137 kb on + strand, within Psyr_3613at 4298.137 kb on + strand, within Psyr_3613at 4298.137 kb on + strand, within Psyr_3613at 4298.137 kb on + strand, within Psyr_3613at 4298.137 kb on + strand, within Psyr_3613at 4298.137 kb on + strand, within Psyr_3613at 4298.138 kb on - strand, within Psyr_3613at 4298.138 kb on - strand, within Psyr_3613at 4298.138 kb on - strand, within Psyr_3613at 4298.138 kb on - strand, within Psyr_3613at 4298.138 kb on - strand, within Psyr_3613at 4298.323 kb on + strandat 4298.324 kb on - strandat 4298.324 kb on - strandat 4298.466 kb on - strand, within Psyr_3614at 4298.506 kb on + strand, within Psyr_3614at 4298.507 kb on - strand, within Psyr_3614at 4298.507 kb on - strand, within Psyr_3614at 4298.507 kb on - strand, within Psyr_3614at 4298.584 kb on + strand, within Psyr_3614at 4298.584 kb on + strand, within Psyr_3614at 4298.585 kb on - strand, within Psyr_3614at 4298.585 kb on - strand, within Psyr_3614at 4298.585 kb on - strand, within Psyr_3614at 4298.612 kb on - strand, within Psyr_3614at 4298.612 kb on - strand, within Psyr_3614at 4298.612 kb on - strand, within Psyr_3614at 4298.612 kb on - strand, within Psyr_3614at 4298.659 kb on + strand, within Psyr_3614at 4298.659 kb on + strand, within Psyr_3614at 4298.659 kb on + strand, within Psyr_3614at 4298.660 kb on - strand, within Psyr_3614at 4298.721 kb on + strandat 4298.721 kb on + strandat 4298.721 kb on + strandat 4298.721 kb on + strandat 4298.721 kb on + strandat 4298.721 kb on + strandat 4298.721 kb on + strandat 4298.721 kb on + strandat 4298.722 kb on - strandat 4298.722 kb on - strandat 4298.752 kb on + strandat 4298.752 kb on + strandat 4298.752 kb on + strandat 4298.753 kb on - strandat 4298.753 kb on - strandat 4298.779 kb on + strandat 4298.779 kb on + strandat 4298.779 kb on + strandat 4298.780 kb on - strandat 4298.780 kb on - strandat 4298.780 kb on - strandat 4298.825 kb on + strandat 4298.852 kb on + strandat 4298.852 kb on + strandat 4298.945 kb on + strandat 4298.945 kb on + strandat 4298.945 kb on + strandat 4298.946 kb on - strandat 4298.946 kb on - strandat 4299.104 kb on + strand, within Psyr_3615at 4299.104 kb on + strand, within Psyr_3615at 4299.152 kb on + strand, within Psyr_3615at 4299.152 kb on + strand, within Psyr_3615at 4299.153 kb on - strand, within Psyr_3615at 4299.153 kb on - strand, within Psyr_3615at 4299.153 kb on - strand, within Psyr_3615at 4299.155 kb on + strand, within Psyr_3615at 4299.155 kb on + strand, within Psyr_3615at 4299.156 kb on - strand, within Psyr_3615at 4299.197 kb on + strand, within Psyr_3615at 4299.197 kb on + strand, within Psyr_3615at 4299.197 kb on + strand, within Psyr_3615at 4299.197 kb on + strand, within Psyr_3615at 4299.198 kb on - strand, within Psyr_3615at 4299.198 kb on - strand, within Psyr_3615at 4299.198 kb on - strand, within Psyr_3615at 4299.198 kb on - strand, within Psyr_3615at 4299.339 kb on - strand, within Psyr_3615at 4299.339 kb on - strand, within Psyr_3615at 4299.455 kb on + strand, within Psyr_3615at 4299.456 kb on - strand, within Psyr_3615at 4299.469 kb on - strand, within Psyr_3615at 4299.469 kb on - strand, within Psyr_3615at 4299.503 kb on - strand, within Psyr_3615at 4299.503 kb on - strand, within Psyr_3615at 4299.503 kb on - strand, within Psyr_3615at 4299.545 kb on + strand, within Psyr_3615at 4299.546 kb on - strand, within Psyr_3615at 4299.546 kb on - strand, within Psyr_3615at 4299.546 kb on - strand, within Psyr_3615at 4299.626 kb on + strand, within Psyr_3615at 4299.692 kb on + strand, within Psyr_3615at 4299.692 kb on + strand, within Psyr_3615at 4299.692 kb on + strand, within Psyr_3615at 4299.692 kb on + strand, within Psyr_3615at 4299.693 kb on - strand, within Psyr_3615at 4299.693 kb on - strand, within Psyr_3615at 4299.693 kb on - strand, within Psyr_3615at 4299.693 kb on - strand, within Psyr_3615at 4299.693 kb on - strand, within Psyr_3615at 4299.693 kb on - strand, within Psyr_3615at 4299.693 kb on - strand, within Psyr_3615

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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4,297,335 + Psyr_3612 0.82 -2.3
4,297,384 + Psyr_3612 0.84 +1.3
4,297,385 - Psyr_3612 0.84 -1.5
4,298,070 - Psyr_3613 0.60 -0.1
4,298,105 + Psyr_3613 0.67 -0.9
4,298,107 + Psyr_3613 0.67 -2.5
4,298,108 - Psyr_3613 0.68 +2.5
4,298,137 + Psyr_3613 0.74 -1.3
4,298,137 + Psyr_3613 0.74 -0.5
4,298,137 + Psyr_3613 0.74 +2.2
4,298,137 + Psyr_3613 0.74 -0.1
4,298,137 + Psyr_3613 0.74 -1.1
4,298,137 + Psyr_3613 0.74 +2.5
4,298,137 + Psyr_3613 0.74 -3.2
4,298,137 + Psyr_3613 0.74 -0.7
4,298,137 + Psyr_3613 0.74 -1.9
4,298,137 + Psyr_3613 0.74 -3.5
4,298,137 + Psyr_3613 0.74 -0.9
4,298,138 - Psyr_3613 0.74 -1.3
4,298,138 - Psyr_3613 0.74 -0.7
4,298,138 - Psyr_3613 0.74 +0.9
4,298,138 - Psyr_3613 0.74 -1.5
4,298,138 - Psyr_3613 0.74 +0.3
4,298,323 + +0.7
4,298,324 - +2.3
4,298,324 - -1.2
4,298,466 - Psyr_3614 0.36 -0.4
4,298,506 + Psyr_3614 0.46 -0.7
4,298,507 - Psyr_3614 0.47 -0.7
4,298,507 - Psyr_3614 0.47 +0.9
4,298,507 - Psyr_3614 0.47 +1.9
4,298,584 + Psyr_3614 0.66 -3.9
4,298,584 + Psyr_3614 0.66 +2.7
4,298,585 - Psyr_3614 0.66 +3.4
4,298,585 - Psyr_3614 0.66 +2.3
4,298,585 - Psyr_3614 0.66 +2.3
4,298,612 - Psyr_3614 0.73 -2.4
4,298,612 - Psyr_3614 0.73 +0.2
4,298,612 - Psyr_3614 0.73 -2.6
4,298,612 - Psyr_3614 0.73 +1.5
4,298,659 + Psyr_3614 0.85 -3.4
4,298,659 + Psyr_3614 0.85 +2.7
4,298,659 + Psyr_3614 0.85 +4.0
4,298,660 - Psyr_3614 0.85 -2.7
4,298,721 + -1.1
4,298,721 + -0.7
4,298,721 + -1.1
4,298,721 + -3.1
4,298,721 + +0.0
4,298,721 + -1.1
4,298,721 + -2.6
4,298,721 + +2.7
4,298,722 - +2.3
4,298,722 - +4.3
4,298,752 + +4.0
4,298,752 + -0.1
4,298,752 + -1.7
4,298,753 - -0.1
4,298,753 - +3.7
4,298,779 + +2.3
4,298,779 + +2.3
4,298,779 + -1.4
4,298,780 - -1.5
4,298,780 - +4.3
4,298,780 - -3.4
4,298,825 + -3.1
4,298,852 + +2.7
4,298,852 + +2.5
4,298,945 + +4.4
4,298,945 + +4.1
4,298,945 + +2.5
4,298,946 - +1.9
4,298,946 - +3.5
4,299,104 + Psyr_3615 0.16 -0.5
4,299,104 + Psyr_3615 0.16 -2.2
4,299,152 + Psyr_3615 0.20 +0.9
4,299,152 + Psyr_3615 0.20 -0.2
4,299,153 - Psyr_3615 0.20 -0.5
4,299,153 - Psyr_3615 0.20 -1.8
4,299,153 - Psyr_3615 0.20 -3.2
4,299,155 + Psyr_3615 0.21 -0.0
4,299,155 + Psyr_3615 0.21 -2.3
4,299,156 - Psyr_3615 0.21 -1.0
4,299,197 + Psyr_3615 0.24 +0.2
4,299,197 + Psyr_3615 0.24 +0.9
4,299,197 + Psyr_3615 0.24 -2.2
4,299,197 + Psyr_3615 0.24 +1.9
4,299,198 - Psyr_3615 0.24 -0.6
4,299,198 - Psyr_3615 0.24 -1.0
4,299,198 - Psyr_3615 0.24 +0.9
4,299,198 - Psyr_3615 0.24 +3.1
4,299,339 - Psyr_3615 0.36 +2.9
4,299,339 - Psyr_3615 0.36 -2.9
4,299,455 + Psyr_3615 0.45 +2.9
4,299,456 - Psyr_3615 0.45 +0.6
4,299,469 - Psyr_3615 0.46 +0.9
4,299,469 - Psyr_3615 0.46 -0.3
4,299,503 - Psyr_3615 0.49 -1.9
4,299,503 - Psyr_3615 0.49 +3.4
4,299,503 - Psyr_3615 0.49 -0.4
4,299,545 + Psyr_3615 0.53 -1.4
4,299,546 - Psyr_3615 0.53 -2.3
4,299,546 - Psyr_3615 0.53 +0.9
4,299,546 - Psyr_3615 0.53 +3.5
4,299,626 + Psyr_3615 0.59 -0.3
4,299,692 + Psyr_3615 0.65 +3.1
4,299,692 + Psyr_3615 0.65 -2.2
4,299,692 + Psyr_3615 0.65 -0.3
4,299,692 + Psyr_3615 0.65 +1.0
4,299,693 - Psyr_3615 0.65 +1.9
4,299,693 - Psyr_3615 0.65 -0.3
4,299,693 - Psyr_3615 0.65 +2.3
4,299,693 - Psyr_3615 0.65 -0.2
4,299,693 - Psyr_3615 0.65 -0.5
4,299,693 - Psyr_3615 0.65 -1.3
4,299,693 - Psyr_3615 0.65 +3.9

Or see this region's nucleotide sequence