Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3509 and Psyr_3510 overlap by 1 nucleotides Psyr_3510 and Psyr_3511 are separated by 167 nucleotides Psyr_3511 and Psyr_3512 overlap by 4 nucleotides
Psyr_3509: Psyr_3509 - Cytochrome B561, bacterial, at 4,184,948 to 4,185,493
_3509
Psyr_3510: Psyr_3510 - conserved hypothetical protein, at 4,185,493 to 4,185,756
_3510
Psyr_3511: Psyr_3511 - Response regulator receiver:Transcriptional regulatory protein, C-terminal, at 4,185,924 to 4,186,586
_3511
Psyr_3512: Psyr_3512 - ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal, at 4,186,583 to 4,187,956
_3512
Position (kb) 4185
4186
4187 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4184.925 kb on + strand at 4184.926 kb on - strand at 4185.017 kb on + strand, within Psyr_3509 at 4185.017 kb on + strand, within Psyr_3509 at 4185.017 kb on + strand, within Psyr_3509 at 4185.018 kb on - strand, within Psyr_3509 at 4185.188 kb on + strand, within Psyr_3509 at 4185.188 kb on + strand, within Psyr_3509 at 4185.188 kb on + strand, within Psyr_3509 at 4185.189 kb on - strand, within Psyr_3509 at 4185.189 kb on - strand, within Psyr_3509 at 4185.266 kb on - strand, within Psyr_3509 at 4185.363 kb on + strand, within Psyr_3509 at 4185.366 kb on + strand, within Psyr_3509 at 4185.367 kb on - strand, within Psyr_3509 at 4185.380 kb on - strand, within Psyr_3509 at 4185.380 kb on - strand, within Psyr_3509 at 4185.380 kb on - strand, within Psyr_3509 at 4185.411 kb on + strand, within Psyr_3509 at 4185.411 kb on + strand, within Psyr_3509 at 4185.412 kb on - strand, within Psyr_3509 at 4185.494 kb on + strand at 4185.494 kb on + strand at 4185.494 kb on + strand at 4185.494 kb on + strand at 4185.540 kb on - strand, within Psyr_3510 at 4185.777 kb on + strand at 4185.788 kb on + strand at 4185.807 kb on + strand at 4185.818 kb on + strand at 4185.819 kb on - strand at 4185.821 kb on + strand at 4185.821 kb on + strand at 4185.821 kb on + strand at 4185.822 kb on - strand at 4185.822 kb on - strand at 4185.822 kb on - strand at 4185.996 kb on + strand, within Psyr_3511 at 4185.996 kb on + strand, within Psyr_3511 at 4185.997 kb on - strand, within Psyr_3511 at 4185.997 kb on - strand, within Psyr_3511 at 4185.997 kb on - strand, within Psyr_3511 at 4185.998 kb on + strand, within Psyr_3511 at 4186.184 kb on + strand, within Psyr_3511 at 4186.215 kb on + strand, within Psyr_3511 at 4186.366 kb on + strand, within Psyr_3511 at 4186.387 kb on - strand, within Psyr_3511 at 4186.458 kb on + strand, within Psyr_3511 at 4186.459 kb on - strand, within Psyr_3511 at 4186.459 kb on - strand, within Psyr_3511 at 4186.563 kb on + strand at 4186.593 kb on + strand at 4186.698 kb on - strand at 4186.785 kb on - strand, within Psyr_3512 at 4187.040 kb on + strand, within Psyr_3512 at 4187.041 kb on - strand, within Psyr_3512 at 4187.041 kb on - strand, within Psyr_3512 at 4187.041 kb on - strand, within Psyr_3512 at 4187.041 kb on - strand, within Psyr_3512 at 4187.215 kb on - strand, within Psyr_3512
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 4,184,925 + -1.2 4,184,926 - -0.4 4,185,017 + Psyr_3509 0.13 -2.6 4,185,017 + Psyr_3509 0.13 +1.9 4,185,017 + Psyr_3509 0.13 -3.3 4,185,018 - Psyr_3509 0.13 +1.5 4,185,188 + Psyr_3509 0.44 -0.1 4,185,188 + Psyr_3509 0.44 -0.6 4,185,188 + Psyr_3509 0.44 -0.4 4,185,189 - Psyr_3509 0.44 +0.3 4,185,189 - Psyr_3509 0.44 +0.1 4,185,266 - Psyr_3509 0.58 -1.7 4,185,363 + Psyr_3509 0.76 -0.1 4,185,366 + Psyr_3509 0.77 -2.3 4,185,367 - Psyr_3509 0.77 -0.9 4,185,380 - Psyr_3509 0.79 -2.5 4,185,380 - Psyr_3509 0.79 -0.0 4,185,380 - Psyr_3509 0.79 +0.9 4,185,411 + Psyr_3509 0.85 -1.7 4,185,411 + Psyr_3509 0.85 +2.7 4,185,412 - Psyr_3509 0.85 +3.5 4,185,494 + -0.6 4,185,494 + -2.4 4,185,494 + -1.3 4,185,494 + +3.6 4,185,540 - Psyr_3510 0.18 +3.7 4,185,777 + -1.1 4,185,788 + -0.1 4,185,807 + -1.8 4,185,818 + -2.9 4,185,819 - +2.9 4,185,821 + +3.6 4,185,821 + -0.4 4,185,821 + +0.7 4,185,822 - +0.9 4,185,822 - -1.9 4,185,822 - -0.5 4,185,996 + Psyr_3511 0.11 +2.5 4,185,996 + Psyr_3511 0.11 +4.4 4,185,997 - Psyr_3511 0.11 +2.2 4,185,997 - Psyr_3511 0.11 -0.2 4,185,997 - Psyr_3511 0.11 -2.7 4,185,998 + Psyr_3511 0.11 +3.1 4,186,184 + Psyr_3511 0.39 -2.0 4,186,215 + Psyr_3511 0.44 -0.7 4,186,366 + Psyr_3511 0.67 +0.1 4,186,387 - Psyr_3511 0.70 +4.1 4,186,458 + Psyr_3511 0.81 +3.2 4,186,459 - Psyr_3511 0.81 +1.4 4,186,459 - Psyr_3511 0.81 +3.9 4,186,563 + +0.4 4,186,593 + +4.6 4,186,698 - +1.5 4,186,785 - Psyr_3512 0.15 +3.6 4,187,040 + Psyr_3512 0.33 -0.1 4,187,041 - Psyr_3512 0.33 +4.0 4,187,041 - Psyr_3512 0.33 -1.7 4,187,041 - Psyr_3512 0.33 -1.6 4,187,041 - Psyr_3512 0.33 +1.9 4,187,215 - Psyr_3512 0.46 -1.6
Or see this region's nucleotide sequence