Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3498

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3497 and Psyr_3498 are separated by 263 nucleotidesPsyr_3498 and Psyr_3499 are separated by 51 nucleotides Psyr_3497: Psyr_3497 - SH3-like region, at 4,167,018 to 4,167,848 _3497 Psyr_3498: Psyr_3498 - Conserved hypothetical protein 730, at 4,168,112 to 4,169,518 _3498 Psyr_3499: Psyr_3499 - transcriptional regulator, AraC family, at 4,169,570 to 4,170,439 _3499 Position (kb) 4168 4169 4170Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4167.118 kb on + strand, within Psyr_3497at 4167.118 kb on + strand, within Psyr_3497at 4167.119 kb on - strand, within Psyr_3497at 4167.119 kb on - strand, within Psyr_3497at 4167.119 kb on - strand, within Psyr_3497at 4167.522 kb on + strand, within Psyr_3497at 4167.523 kb on - strand, within Psyr_3497at 4167.523 kb on - strand, within Psyr_3497at 4167.523 kb on - strand, within Psyr_3497at 4167.523 kb on - strand, within Psyr_3497at 4167.526 kb on + strand, within Psyr_3497at 4167.526 kb on + strand, within Psyr_3497at 4167.526 kb on + strand, within Psyr_3497at 4167.526 kb on + strand, within Psyr_3497at 4167.526 kb on + strand, within Psyr_3497at 4167.526 kb on + strand, within Psyr_3497at 4167.526 kb on + strand, within Psyr_3497at 4167.526 kb on + strand, within Psyr_3497at 4167.527 kb on - strand, within Psyr_3497at 4167.527 kb on - strand, within Psyr_3497at 4167.527 kb on - strand, within Psyr_3497at 4167.527 kb on - strand, within Psyr_3497at 4167.527 kb on - strand, within Psyr_3497at 4167.527 kb on - strand, within Psyr_3497at 4167.527 kb on - strand, within Psyr_3497at 4167.527 kb on - strand, within Psyr_3497at 4167.527 kb on - strand, within Psyr_3497at 4167.527 kb on - strand, within Psyr_3497at 4167.527 kb on - strand, within Psyr_3497at 4167.530 kb on + strand, within Psyr_3497at 4167.531 kb on - strand, within Psyr_3497at 4167.702 kb on + strand, within Psyr_3497at 4167.703 kb on - strand, within Psyr_3497at 4167.703 kb on - strand, within Psyr_3497at 4167.709 kb on - strand, within Psyr_3497at 4167.723 kb on + strand, within Psyr_3497at 4167.809 kb on + strandat 4167.875 kb on + strandat 4168.065 kb on + strandat 4168.141 kb on + strandat 4168.141 kb on + strandat 4168.141 kb on + strandat 4168.142 kb on - strandat 4168.142 kb on - strandat 4168.142 kb on - strandat 4168.142 kb on - strandat 4168.176 kb on + strandat 4168.177 kb on - strandat 4168.253 kb on + strand, within Psyr_3498at 4168.253 kb on + strand, within Psyr_3498at 4168.253 kb on + strand, within Psyr_3498at 4168.253 kb on + strand, within Psyr_3498at 4168.253 kb on + strand, within Psyr_3498at 4168.253 kb on + strand, within Psyr_3498at 4168.253 kb on + strand, within Psyr_3498at 4168.253 kb on + strand, within Psyr_3498at 4168.253 kb on + strand, within Psyr_3498at 4168.254 kb on - strand, within Psyr_3498at 4168.254 kb on - strand, within Psyr_3498at 4168.254 kb on - strandat 4168.254 kb on - strand, within Psyr_3498at 4168.254 kb on - strand, within Psyr_3498at 4168.254 kb on - strand, within Psyr_3498at 4168.254 kb on - strand, within Psyr_3498at 4168.254 kb on - strand, within Psyr_3498at 4168.254 kb on - strand, within Psyr_3498at 4168.254 kb on - strand, within Psyr_3498at 4168.254 kb on - strand, within Psyr_3498at 4168.254 kb on - strand, within Psyr_3498at 4168.334 kb on + strand, within Psyr_3498at 4168.478 kb on + strand, within Psyr_3498at 4168.478 kb on + strand, within Psyr_3498at 4168.478 kb on + strand, within Psyr_3498at 4168.478 kb on + strand, within Psyr_3498at 4168.478 kb on + strand, within Psyr_3498at 4168.479 kb on - strand, within Psyr_3498at 4168.481 kb on - strand, within Psyr_3498at 4168.541 kb on + strand, within Psyr_3498at 4168.541 kb on + strand, within Psyr_3498at 4168.541 kb on + strand, within Psyr_3498at 4168.542 kb on - strand, within Psyr_3498at 4168.542 kb on - strand, within Psyr_3498at 4168.542 kb on - strand, within Psyr_3498at 4168.631 kb on - strand, within Psyr_3498at 4168.641 kb on - strand, within Psyr_3498at 4168.641 kb on - strand, within Psyr_3498at 4168.646 kb on + strand, within Psyr_3498at 4168.646 kb on + strand, within Psyr_3498at 4168.646 kb on + strand, within Psyr_3498at 4168.646 kb on + strand, within Psyr_3498at 4168.646 kb on + strand, within Psyr_3498at 4168.646 kb on + strand, within Psyr_3498at 4168.646 kb on + strand, within Psyr_3498at 4168.646 kb on + strand, within Psyr_3498at 4168.647 kb on - strand, within Psyr_3498at 4168.647 kb on - strand, within Psyr_3498at 4168.647 kb on - strand, within Psyr_3498at 4168.647 kb on - strand, within Psyr_3498at 4168.647 kb on - strand, within Psyr_3498at 4168.950 kb on - strand, within Psyr_3498at 4169.033 kb on + strand, within Psyr_3498at 4169.033 kb on + strand, within Psyr_3498at 4169.033 kb on + strand, within Psyr_3498at 4169.094 kb on - strand, within Psyr_3498at 4169.490 kb on - strandat 4169.490 kb on - strandat 4169.532 kb on + strandat 4169.572 kb on - strandat 4169.691 kb on + strand, within Psyr_3499at 4169.691 kb on + strand, within Psyr_3499at 4169.691 kb on + strand, within Psyr_3499at 4169.691 kb on + strand, within Psyr_3499at 4169.692 kb on - strand, within Psyr_3499at 4169.692 kb on - strand, within Psyr_3499at 4169.692 kb on - strand, within Psyr_3499at 4169.692 kb on - strand, within Psyr_3499at 4169.692 kb on - strand, within Psyr_3499at 4170.042 kb on + strand, within Psyr_3499at 4170.043 kb on - strand, within Psyr_3499at 4170.066 kb on + strand, within Psyr_3499at 4170.067 kb on - strand, within Psyr_3499at 4170.157 kb on + strand, within Psyr_3499at 4170.158 kb on - strand, within Psyr_3499at 4170.273 kb on + strand, within Psyr_3499at 4170.274 kb on - strand, within Psyr_3499at 4170.477 kb on + strandat 4170.477 kb on + strandat 4170.500 kb on + strandat 4170.500 kb on + strandat 4170.500 kb on + strandat 4170.500 kb on + strandat 4170.500 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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4,167,118 + Psyr_3497 0.12 +2.5
4,167,118 + Psyr_3497 0.12 +1.0
4,167,119 - Psyr_3497 0.12 +0.6
4,167,119 - Psyr_3497 0.12 +2.2
4,167,119 - Psyr_3497 0.12 +4.0
4,167,522 + Psyr_3497 0.61 +2.7
4,167,523 - Psyr_3497 0.61 -3.0
4,167,523 - Psyr_3497 0.61 +4.1
4,167,523 - Psyr_3497 0.61 -1.5
4,167,523 - Psyr_3497 0.61 +3.8
4,167,526 + Psyr_3497 0.61 +2.9
4,167,526 + Psyr_3497 0.61 +0.9
4,167,526 + Psyr_3497 0.61 +0.9
4,167,526 + Psyr_3497 0.61 +0.6
4,167,526 + Psyr_3497 0.61 -1.8
4,167,526 + Psyr_3497 0.61 +2.7
4,167,526 + Psyr_3497 0.61 -1.1
4,167,526 + Psyr_3497 0.61 -2.2
4,167,527 - Psyr_3497 0.61 +2.9
4,167,527 - Psyr_3497 0.61 +0.9
4,167,527 - Psyr_3497 0.61 -0.6
4,167,527 - Psyr_3497 0.61 +1.0
4,167,527 - Psyr_3497 0.61 -0.1
4,167,527 - Psyr_3497 0.61 +2.9
4,167,527 - Psyr_3497 0.61 -0.3
4,167,527 - Psyr_3497 0.61 +2.7
4,167,527 - Psyr_3497 0.61 +0.8
4,167,527 - Psyr_3497 0.61 -1.2
4,167,527 - Psyr_3497 0.61 +3.5
4,167,530 + Psyr_3497 0.62 +3.5
4,167,531 - Psyr_3497 0.62 -2.0
4,167,702 + Psyr_3497 0.82 -1.0
4,167,703 - Psyr_3497 0.82 -0.1
4,167,703 - Psyr_3497 0.82 -0.8
4,167,709 - Psyr_3497 0.83 +1.3
4,167,723 + Psyr_3497 0.85 +0.3
4,167,809 + +2.2
4,167,875 + -0.7
4,168,065 + +0.2
4,168,141 + -2.1
4,168,141 + -0.5
4,168,141 + +3.6
4,168,142 - -3.4
4,168,142 - +3.8
4,168,142 - -1.4
4,168,142 - +3.7
4,168,176 + -1.9
4,168,177 - +3.0
4,168,253 + Psyr_3498 0.10 +2.7
4,168,253 + Psyr_3498 0.10 +0.9
4,168,253 + Psyr_3498 0.10 -1.9
4,168,253 + Psyr_3498 0.10 -0.4
4,168,253 + Psyr_3498 0.10 +2.7
4,168,253 + Psyr_3498 0.10 -2.8
4,168,253 + Psyr_3498 0.10 -2.2
4,168,253 + Psyr_3498 0.10 -0.1
4,168,253 + Psyr_3498 0.10 -0.5
4,168,254 - Psyr_3498 0.10 -2.0
4,168,254 - Psyr_3498 0.10 +0.5
4,168,254 - -1.1
4,168,254 - Psyr_3498 0.10 +0.9
4,168,254 - Psyr_3498 0.10 -0.5
4,168,254 - Psyr_3498 0.10 +1.9
4,168,254 - Psyr_3498 0.10 +2.7
4,168,254 - Psyr_3498 0.10 -1.9
4,168,254 - Psyr_3498 0.10 +0.8
4,168,254 - Psyr_3498 0.10 +1.0
4,168,254 - Psyr_3498 0.10 -1.7
4,168,254 - Psyr_3498 0.10 +1.9
4,168,334 + Psyr_3498 0.16 +0.8
4,168,478 + Psyr_3498 0.26 -0.3
4,168,478 + Psyr_3498 0.26 +2.2
4,168,478 + Psyr_3498 0.26 -0.6
4,168,478 + Psyr_3498 0.26 -0.9
4,168,478 + Psyr_3498 0.26 -2.7
4,168,479 - Psyr_3498 0.26 -2.2
4,168,481 - Psyr_3498 0.26 -0.9
4,168,541 + Psyr_3498 0.30 -2.1
4,168,541 + Psyr_3498 0.30 -0.5
4,168,541 + Psyr_3498 0.30 -3.1
4,168,542 - Psyr_3498 0.31 +2.5
4,168,542 - Psyr_3498 0.31 +2.2
4,168,542 - Psyr_3498 0.31 +1.9
4,168,631 - Psyr_3498 0.37 -0.5
4,168,641 - Psyr_3498 0.38 +1.0
4,168,641 - Psyr_3498 0.38 +2.7
4,168,646 + Psyr_3498 0.38 -2.3
4,168,646 + Psyr_3498 0.38 +0.5
4,168,646 + Psyr_3498 0.38 +1.9
4,168,646 + Psyr_3498 0.38 -0.1
4,168,646 + Psyr_3498 0.38 -2.4
4,168,646 + Psyr_3498 0.38 -1.1
4,168,646 + Psyr_3498 0.38 +0.9
4,168,646 + Psyr_3498 0.38 +3.7
4,168,647 - Psyr_3498 0.38 -2.4
4,168,647 - Psyr_3498 0.38 -0.4
4,168,647 - Psyr_3498 0.38 -0.1
4,168,647 - Psyr_3498 0.38 -1.6
4,168,647 - Psyr_3498 0.38 -4.0
4,168,950 - Psyr_3498 0.60 +0.3
4,169,033 + Psyr_3498 0.65 -1.2
4,169,033 + Psyr_3498 0.65 -3.7
4,169,033 + Psyr_3498 0.65 +2.2
4,169,094 - Psyr_3498 0.70 -0.1
4,169,490 - -0.1
4,169,490 - +1.5
4,169,532 + +3.2
4,169,572 - +0.8
4,169,691 + Psyr_3499 0.14 +1.2
4,169,691 + Psyr_3499 0.14 -1.1
4,169,691 + Psyr_3499 0.14 +1.9
4,169,691 + Psyr_3499 0.14 +0.7
4,169,692 - Psyr_3499 0.14 -1.8
4,169,692 - Psyr_3499 0.14 +3.8
4,169,692 - Psyr_3499 0.14 -1.3
4,169,692 - Psyr_3499 0.14 -1.4
4,169,692 - Psyr_3499 0.14 +2.2
4,170,042 + Psyr_3499 0.54 -0.1
4,170,043 - Psyr_3499 0.54 +0.9
4,170,066 + Psyr_3499 0.57 +3.5
4,170,067 - Psyr_3499 0.57 +3.7
4,170,157 + Psyr_3499 0.67 -0.3
4,170,158 - Psyr_3499 0.68 -0.1
4,170,273 + Psyr_3499 0.81 -2.1
4,170,274 - Psyr_3499 0.81 -0.7
4,170,477 + -3.0
4,170,477 + -3.0
4,170,500 + +2.2
4,170,500 + -2.1
4,170,500 + -1.2
4,170,500 + -0.8
4,170,500 + -2.8

Or see this region's nucleotide sequence