Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3487

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3486 and Psyr_3487 are separated by 77 nucleotidesPsyr_3487 and Psyr_3488 are separated by 161 nucleotidesPsyr_3488 and Psyr_3489 are separated by 49 nucleotides Psyr_3486: Psyr_3486 - Response regulator receiver:CheW-like protein, at 4,155,735 to 4,156,661 _3486 Psyr_3487: Psyr_3487 - flagellar protein FlgA, at 4,156,739 to 4,157,497 _3487 Psyr_3488: Psyr_3488 - anti-sigma-28 factor, FlgM, at 4,157,659 to 4,157,973 _3488 Psyr_3489: Psyr_3489 - FlgN, at 4,158,023 to 4,158,490 _3489 Position (kb) 4156 4157 4158Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4155.860 kb on + strand, within Psyr_3486at 4155.903 kb on + strand, within Psyr_3486at 4155.920 kb on + strandat 4155.922 kb on + strand, within Psyr_3486at 4155.922 kb on + strand, within Psyr_3486at 4155.923 kb on - strand, within Psyr_3486at 4155.923 kb on - strand, within Psyr_3486at 4156.012 kb on + strand, within Psyr_3486at 4156.012 kb on + strand, within Psyr_3486at 4156.013 kb on - strand, within Psyr_3486at 4156.268 kb on - strand, within Psyr_3486at 4156.372 kb on + strand, within Psyr_3486at 4156.469 kb on + strand, within Psyr_3486at 4156.533 kb on + strand, within Psyr_3486at 4156.533 kb on + strand, within Psyr_3486at 4156.533 kb on + strand, within Psyr_3486at 4156.533 kb on + strand, within Psyr_3486at 4156.533 kb on + strand, within Psyr_3486at 4156.533 kb on + strand, within Psyr_3486at 4156.534 kb on - strand, within Psyr_3486at 4156.534 kb on - strand, within Psyr_3486at 4156.542 kb on + strand, within Psyr_3486at 4156.726 kb on + strandat 4156.731 kb on - strandat 4156.908 kb on + strand, within Psyr_3487at 4156.908 kb on + strand, within Psyr_3487at 4156.909 kb on - strand, within Psyr_3487at 4156.909 kb on - strand, within Psyr_3487at 4156.909 kb on - strand, within Psyr_3487at 4156.909 kb on - strand, within Psyr_3487at 4156.909 kb on - strand, within Psyr_3487at 4156.916 kb on + strand, within Psyr_3487at 4156.916 kb on + strand, within Psyr_3487at 4156.916 kb on + strand, within Psyr_3487at 4156.916 kb on + strand, within Psyr_3487at 4156.916 kb on + strand, within Psyr_3487at 4156.916 kb on + strand, within Psyr_3487at 4156.917 kb on - strand, within Psyr_3487at 4156.917 kb on - strand, within Psyr_3487at 4156.917 kb on - strand, within Psyr_3487at 4156.953 kb on + strand, within Psyr_3487at 4156.954 kb on - strand, within Psyr_3487at 4156.954 kb on - strand, within Psyr_3487at 4156.954 kb on - strand, within Psyr_3487at 4157.114 kb on + strand, within Psyr_3487at 4157.419 kb on - strand, within Psyr_3487at 4157.492 kb on - strandat 4157.492 kb on - strandat 4157.495 kb on + strandat 4157.495 kb on + strandat 4157.495 kb on + strandat 4157.495 kb on + strandat 4157.495 kb on + strandat 4157.495 kb on + strandat 4157.496 kb on - strandat 4157.496 kb on - strandat 4157.496 kb on - strandat 4157.496 kb on - strandat 4157.496 kb on - strandat 4157.496 kb on - strandat 4157.496 kb on - strandat 4157.971 kb on + strandat 4157.972 kb on - strandat 4158.034 kb on + strandat 4158.034 kb on + strandat 4158.035 kb on - strandat 4158.035 kb on - strandat 4158.035 kb on - strandat 4158.203 kb on - strand, within Psyr_3489at 4158.276 kb on + strand, within Psyr_3489at 4158.424 kb on + strand, within Psyr_3489at 4158.424 kb on + strand, within Psyr_3489at 4158.424 kb on + strand, within Psyr_3489at 4158.424 kb on + strand, within Psyr_3489at 4158.425 kb on - strand, within Psyr_3489at 4158.432 kb on - strand, within Psyr_3489at 4158.432 kb on - strand, within Psyr_3489at 4158.432 kb on - strand, within Psyr_3489at 4158.457 kb on + strandat 4158.489 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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4,155,860 + Psyr_3486 0.13 +1.1
4,155,903 + Psyr_3486 0.18 +3.0
4,155,920 + -0.1
4,155,922 + Psyr_3486 0.20 -2.4
4,155,922 + Psyr_3486 0.20 +0.4
4,155,923 - Psyr_3486 0.20 -0.1
4,155,923 - Psyr_3486 0.20 +0.8
4,156,012 + Psyr_3486 0.30 +3.0
4,156,012 + Psyr_3486 0.30 +0.9
4,156,013 - Psyr_3486 0.30 -0.7
4,156,268 - Psyr_3486 0.57 -1.3
4,156,372 + Psyr_3486 0.69 +1.9
4,156,469 + Psyr_3486 0.79 +0.4
4,156,533 + Psyr_3486 0.86 -2.0
4,156,533 + Psyr_3486 0.86 -1.6
4,156,533 + Psyr_3486 0.86 -3.7
4,156,533 + Psyr_3486 0.86 -3.6
4,156,533 + Psyr_3486 0.86 +2.9
4,156,533 + Psyr_3486 0.86 -0.4
4,156,534 - Psyr_3486 0.86 -0.1
4,156,534 - Psyr_3486 0.86 +1.9
4,156,542 + Psyr_3486 0.87 +2.9
4,156,726 + -3.8
4,156,731 - +3.0
4,156,908 + Psyr_3487 0.22 -0.6
4,156,908 + Psyr_3487 0.22 -0.9
4,156,909 - Psyr_3487 0.22 +1.5
4,156,909 - Psyr_3487 0.22 +1.6
4,156,909 - Psyr_3487 0.22 -0.1
4,156,909 - Psyr_3487 0.22 -1.8
4,156,909 - Psyr_3487 0.22 +0.7
4,156,916 + Psyr_3487 0.23 -0.6
4,156,916 + Psyr_3487 0.23 -1.0
4,156,916 + Psyr_3487 0.23 +4.2
4,156,916 + Psyr_3487 0.23 +0.4
4,156,916 + Psyr_3487 0.23 -2.0
4,156,916 + Psyr_3487 0.23 -3.3
4,156,917 - Psyr_3487 0.23 +1.4
4,156,917 - Psyr_3487 0.23 +0.4
4,156,917 - Psyr_3487 0.23 +0.3
4,156,953 + Psyr_3487 0.28 +1.9
4,156,954 - Psyr_3487 0.28 -2.1
4,156,954 - Psyr_3487 0.28 -0.8
4,156,954 - Psyr_3487 0.28 +0.6
4,157,114 + Psyr_3487 0.49 -1.2
4,157,419 - Psyr_3487 0.90 +0.3
4,157,492 - -1.1
4,157,492 - +1.9
4,157,495 + +1.9
4,157,495 + +0.9
4,157,495 + -0.7
4,157,495 + -1.0
4,157,495 + -2.7
4,157,495 + +1.9
4,157,496 - -0.8
4,157,496 - +3.3
4,157,496 - -1.7
4,157,496 - +0.2
4,157,496 - -1.0
4,157,496 - -2.1
4,157,496 - +4.3
4,157,971 + +0.5
4,157,972 - +3.7
4,158,034 + +1.4
4,158,034 + +3.6
4,158,035 - -0.6
4,158,035 - +3.9
4,158,035 - -0.1
4,158,203 - Psyr_3489 0.38 -0.7
4,158,276 + Psyr_3489 0.54 +1.9
4,158,424 + Psyr_3489 0.86 +1.4
4,158,424 + Psyr_3489 0.86 +1.4
4,158,424 + Psyr_3489 0.86 -0.2
4,158,424 + Psyr_3489 0.86 +2.7
4,158,425 - Psyr_3489 0.86 +0.9
4,158,432 - Psyr_3489 0.87 -1.9
4,158,432 - Psyr_3489 0.87 +1.9
4,158,432 - Psyr_3489 0.87 +3.6
4,158,457 + +0.9
4,158,489 - -0.5

Or see this region's nucleotide sequence