Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3459 and Psyr_3460 overlap by 1 nucleotides Psyr_3460 and Psyr_3461 are separated by 122 nucleotides
Psyr_3459: Psyr_3459 - Helix-turn-helix, Fis-type, at 4,122,450 to 4,123,865
_3459
Psyr_3460: Psyr_3460 - PAS/PAC sensor signal transduction histidine kinase, at 4,123,865 to 4,125,079
_3460
Psyr_3461: Psyr_3461 - Helix-turn-helix, Fis-type, at 4,125,202 to 4,126,677
_3461
Position (kb) 4123
4124
4125
4126 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 4122.902 kb on + strand, within Psyr_3459 at 4122.903 kb on - strand, within Psyr_3459 at 4122.903 kb on - strand, within Psyr_3459 at 4122.903 kb on - strand, within Psyr_3459 at 4123.319 kb on + strand, within Psyr_3459 at 4123.778 kb on + strand at 4123.778 kb on + strand at 4123.779 kb on - strand at 4123.779 kb on - strand at 4123.779 kb on - strand at 4123.780 kb on + strand at 4123.780 kb on + strand at 4123.780 kb on + strand at 4123.780 kb on + strand at 4123.780 kb on + strand at 4123.781 kb on - strand at 4123.781 kb on - strand at 4123.781 kb on - strand at 4123.781 kb on - strand at 4123.781 kb on - strand at 4123.781 kb on - strand at 4123.781 kb on - strand at 4123.781 kb on - strand at 4123.781 kb on - strand at 4123.870 kb on + strand at 4123.870 kb on + strand at 4123.870 kb on + strand at 4123.870 kb on + strand at 4123.871 kb on - strand at 4123.871 kb on - strand at 4123.874 kb on - strand at 4123.874 kb on - strand at 4123.874 kb on - strand at 4123.947 kb on + strand at 4123.947 kb on + strand at 4123.947 kb on + strand at 4123.947 kb on + strand at 4123.948 kb on - strand at 4123.948 kb on - strand at 4123.948 kb on - strand at 4124.118 kb on + strand, within Psyr_3460 at 4124.119 kb on - strand, within Psyr_3460 at 4124.463 kb on + strand, within Psyr_3460 at 4124.463 kb on + strand, within Psyr_3460 at 4124.488 kb on + strand, within Psyr_3460 at 4124.518 kb on + strand, within Psyr_3460 at 4124.597 kb on + strand, within Psyr_3460 at 4124.598 kb on - strand, within Psyr_3460 at 4124.759 kb on - strand, within Psyr_3460 at 4125.047 kb on + strand at 4125.132 kb on + strand at 4125.133 kb on - strand at 4125.245 kb on + strand at 4125.245 kb on + strand at 4125.245 kb on + strand at 4125.246 kb on - strand at 4125.274 kb on - strand at 4125.282 kb on + strand at 4125.283 kb on - strand at 4125.368 kb on + strand, within Psyr_3461 at 4125.369 kb on - strand, within Psyr_3461 at 4125.369 kb on - strand, within Psyr_3461 at 4125.427 kb on - strand, within Psyr_3461 at 4125.427 kb on - strand, within Psyr_3461 at 4125.503 kb on + strand, within Psyr_3461 at 4125.503 kb on + strand, within Psyr_3461 at 4125.504 kb on - strand, within Psyr_3461 at 4125.767 kb on + strand, within Psyr_3461 at 4125.767 kb on + strand, within Psyr_3461 at 4125.767 kb on + strand, within Psyr_3461 at 4125.767 kb on + strand, within Psyr_3461 at 4125.767 kb on + strand, within Psyr_3461
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 4,122,902 + Psyr_3459 0.32 -1.4 4,122,903 - Psyr_3459 0.32 -2.2 4,122,903 - Psyr_3459 0.32 +2.8 4,122,903 - Psyr_3459 0.32 -1.6 4,123,319 + Psyr_3459 0.61 -1.3 4,123,778 + -2.3 4,123,778 + -0.2 4,123,779 - +2.1 4,123,779 - -0.4 4,123,779 - -0.3 4,123,780 + +1.4 4,123,780 + +3.8 4,123,780 + -1.5 4,123,780 + -0.6 4,123,780 + +3.8 4,123,781 - -0.6 4,123,781 - +1.6 4,123,781 - +0.7 4,123,781 - +0.8 4,123,781 - -0.6 4,123,781 - +0.1 4,123,781 - +0.0 4,123,781 - -1.4 4,123,781 - +2.6 4,123,870 + -4.1 4,123,870 + +0.8 4,123,870 + +4.0 4,123,870 + -0.4 4,123,871 - +1.4 4,123,871 - -1.3 4,123,874 - +2.6 4,123,874 - +3.4 4,123,874 - +4.3 4,123,947 + +3.3 4,123,947 + -4.8 4,123,947 + -0.7 4,123,947 + +1.4 4,123,948 - -0.4 4,123,948 - -1.9 4,123,948 - -1.3 4,124,118 + Psyr_3460 0.21 -1.9 4,124,119 - Psyr_3460 0.21 +2.8 4,124,463 + Psyr_3460 0.49 +3.0 4,124,463 + Psyr_3460 0.49 -1.4 4,124,488 + Psyr_3460 0.51 -1.4 4,124,518 + Psyr_3460 0.54 -0.9 4,124,597 + Psyr_3460 0.60 -0.5 4,124,598 - Psyr_3460 0.60 -2.6 4,124,759 - Psyr_3460 0.74 +2.8 4,125,047 + +0.3 4,125,132 + +1.8 4,125,133 - -0.9 4,125,245 + +0.5 4,125,245 + -1.4 4,125,245 + -1.0 4,125,246 - +1.2 4,125,274 - +1.7 4,125,282 + -1.0 4,125,283 - -0.5 4,125,368 + Psyr_3461 0.11 +1.4 4,125,369 - Psyr_3461 0.11 -0.6 4,125,369 - Psyr_3461 0.11 -0.2 4,125,427 - Psyr_3461 0.15 +1.0 4,125,427 - Psyr_3461 0.15 +5.0 4,125,503 + Psyr_3461 0.20 +1.4 4,125,503 + Psyr_3461 0.20 -1.0 4,125,504 - Psyr_3461 0.20 +1.8 4,125,767 + Psyr_3461 0.38 +1.7 4,125,767 + Psyr_3461 0.38 +0.8 4,125,767 + Psyr_3461 0.38 -0.7 4,125,767 + Psyr_3461 0.38 -0.7 4,125,767 + Psyr_3461 0.38 -1.2
Or see this region's nucleotide sequence