Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3441

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3440 and Psyr_3441 are separated by 330 nucleotidesPsyr_3441 and Psyr_3442 are separated by 0 nucleotidesPsyr_3442 and Psyr_3443 are separated by 6 nucleotides Psyr_3440: Psyr_3440 - Flagellar biosynthesis protein FlhA, at 4,103,602 to 4,105,731 _3440 Psyr_3441: Psyr_3441 - Flagellar biosynthetic protein FlhB, at 4,106,062 to 4,107,198 _3441 Psyr_3442: Psyr_3442 - Flagellar biosynthesis protein FliR, at 4,107,199 to 4,107,984 _3442 Psyr_3443: Psyr_3443 - Flagellar biosynthesis protein FliQ, at 4,107,991 to 4,108,260 _3443 Position (kb) 4106 4107 4108Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 4105.125 kb on + strand, within Psyr_3440at 4105.126 kb on - strand, within Psyr_3440at 4105.148 kb on + strand, within Psyr_3440at 4105.148 kb on + strand, within Psyr_3440at 4105.290 kb on + strand, within Psyr_3440at 4105.291 kb on - strand, within Psyr_3440at 4105.291 kb on - strand, within Psyr_3440at 4105.364 kb on + strand, within Psyr_3440at 4105.364 kb on + strand, within Psyr_3440at 4105.364 kb on + strand, within Psyr_3440at 4105.364 kb on + strand, within Psyr_3440at 4105.365 kb on - strand, within Psyr_3440at 4105.365 kb on - strand, within Psyr_3440at 4105.365 kb on - strand, within Psyr_3440at 4105.365 kb on - strand, within Psyr_3440at 4105.365 kb on - strand, within Psyr_3440at 4105.365 kb on - strand, within Psyr_3440at 4105.365 kb on - strand, within Psyr_3440at 4105.365 kb on - strand, within Psyr_3440at 4105.542 kb on - strandat 4105.714 kb on + strandat 4105.714 kb on + strandat 4105.751 kb on + strandat 4105.751 kb on + strandat 4105.752 kb on - strandat 4105.752 kb on - strandat 4105.752 kb on - strandat 4105.752 kb on - strandat 4105.816 kb on + strandat 4105.858 kb on + strandat 4105.859 kb on - strandat 4105.900 kb on - strandat 4106.063 kb on + strandat 4106.063 kb on + strandat 4106.063 kb on + strandat 4106.063 kb on + strandat 4106.154 kb on - strandat 4106.159 kb on + strandat 4106.160 kb on - strandat 4106.160 kb on - strandat 4106.186 kb on + strand, within Psyr_3441at 4106.187 kb on - strand, within Psyr_3441at 4106.187 kb on - strand, within Psyr_3441at 4106.225 kb on + strand, within Psyr_3441at 4106.225 kb on + strand, within Psyr_3441at 4106.225 kb on + strand, within Psyr_3441at 4106.225 kb on + strand, within Psyr_3441at 4106.226 kb on - strand, within Psyr_3441at 4106.226 kb on - strand, within Psyr_3441at 4106.228 kb on + strand, within Psyr_3441at 4106.228 kb on + strand, within Psyr_3441at 4106.228 kb on + strand, within Psyr_3441at 4106.228 kb on + strand, within Psyr_3441at 4106.228 kb on + strand, within Psyr_3441at 4106.228 kb on + strand, within Psyr_3441at 4106.228 kb on + strand, within Psyr_3441at 4106.229 kb on - strand, within Psyr_3441at 4106.229 kb on - strand, within Psyr_3441at 4106.229 kb on - strand, within Psyr_3441at 4106.229 kb on - strand, within Psyr_3441at 4106.229 kb on - strand, within Psyr_3441at 4106.232 kb on + strand, within Psyr_3441at 4106.232 kb on + strand, within Psyr_3441at 4106.233 kb on - strand, within Psyr_3441at 4106.233 kb on - strand, within Psyr_3441at 4106.233 kb on - strand, within Psyr_3441at 4106.233 kb on - strand, within Psyr_3441at 4106.360 kb on + strand, within Psyr_3441at 4106.361 kb on - strand, within Psyr_3441at 4106.361 kb on - strand, within Psyr_3441at 4106.466 kb on + strand, within Psyr_3441at 4106.466 kb on + strand, within Psyr_3441at 4106.466 kb on + strand, within Psyr_3441at 4106.467 kb on - strand, within Psyr_3441at 4106.467 kb on - strand, within Psyr_3441at 4106.467 kb on - strand, within Psyr_3441at 4106.467 kb on - strand, within Psyr_3441at 4106.467 kb on - strand, within Psyr_3441at 4106.467 kb on - strand, within Psyr_3441at 4106.467 kb on - strand, within Psyr_3441at 4106.555 kb on + strand, within Psyr_3441at 4106.555 kb on + strand, within Psyr_3441at 4106.555 kb on + strand, within Psyr_3441at 4106.555 kb on + strand, within Psyr_3441at 4106.555 kb on + strand, within Psyr_3441at 4106.555 kb on + strand, within Psyr_3441at 4106.556 kb on - strand, within Psyr_3441at 4106.556 kb on - strand, within Psyr_3441at 4106.556 kb on - strand, within Psyr_3441at 4106.556 kb on - strand, within Psyr_3441at 4106.556 kb on - strand, within Psyr_3441at 4106.556 kb on - strand, within Psyr_3441at 4106.591 kb on - strand, within Psyr_3441at 4106.591 kb on - strand, within Psyr_3441at 4106.966 kb on + strand, within Psyr_3441at 4106.966 kb on + strand, within Psyr_3441at 4106.966 kb on + strand, within Psyr_3441at 4106.966 kb on + strand, within Psyr_3441at 4106.966 kb on + strand, within Psyr_3441at 4106.966 kb on + strand, within Psyr_3441at 4106.966 kb on + strand, within Psyr_3441at 4106.966 kb on + strand, within Psyr_3441at 4106.967 kb on - strand, within Psyr_3441at 4106.967 kb on - strand, within Psyr_3441at 4106.967 kb on - strand, within Psyr_3441at 4107.258 kb on - strandat 4107.316 kb on - strand, within Psyr_3442at 4107.316 kb on - strand, within Psyr_3442at 4107.316 kb on - strand, within Psyr_3442at 4107.415 kb on + strand, within Psyr_3442at 4107.474 kb on + strand, within Psyr_3442at 4107.624 kb on + strand, within Psyr_3442at 4107.693 kb on + strand, within Psyr_3442at 4107.842 kb on + strand, within Psyr_3442at 4107.842 kb on + strand, within Psyr_3442at 4107.842 kb on + strand, within Psyr_3442at 4107.843 kb on - strand, within Psyr_3442at 4107.843 kb on - strand, within Psyr_3442at 4107.843 kb on - strand, within Psyr_3442at 4107.843 kb on - strand, within Psyr_3442at 4108.012 kb on - strandat 4108.012 kb on - strandat 4108.019 kb on + strand, within Psyr_3443at 4108.020 kb on - strand, within Psyr_3443at 4108.034 kb on + strand, within Psyr_3443at 4108.034 kb on + strand, within Psyr_3443at 4108.034 kb on + strand, within Psyr_3443at 4108.034 kb on + strand, within Psyr_3443at 4108.034 kb on + strand, within Psyr_3443at 4108.034 kb on + strand, within Psyr_3443at 4108.034 kb on + strand, within Psyr_3443at 4108.034 kb on + strand, within Psyr_3443at 4108.035 kb on - strand, within Psyr_3443at 4108.035 kb on - strand, within Psyr_3443at 4108.035 kb on - strand, within Psyr_3443at 4108.035 kb on - strand, within Psyr_3443at 4108.045 kb on + strand, within Psyr_3443at 4108.046 kb on - strand, within Psyr_3443at 4108.046 kb on - strand, within Psyr_3443

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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4,105,125 + Psyr_3440 0.72 -3.2
4,105,126 - Psyr_3440 0.72 -0.1
4,105,148 + Psyr_3440 0.73 +2.6
4,105,148 + Psyr_3440 0.73 +0.8
4,105,290 + Psyr_3440 0.79 -1.0
4,105,291 - Psyr_3440 0.79 +2.6
4,105,291 - Psyr_3440 0.79 +2.6
4,105,364 + Psyr_3440 0.83 -2.8
4,105,364 + Psyr_3440 0.83 -1.6
4,105,364 + Psyr_3440 0.83 -0.5
4,105,364 + Psyr_3440 0.83 -0.9
4,105,365 - Psyr_3440 0.83 +0.2
4,105,365 - Psyr_3440 0.83 +2.1
4,105,365 - Psyr_3440 0.83 -0.1
4,105,365 - Psyr_3440 0.83 +3.5
4,105,365 - Psyr_3440 0.83 -0.3
4,105,365 - Psyr_3440 0.83 -2.1
4,105,365 - Psyr_3440 0.83 +0.8
4,105,365 - Psyr_3440 0.83 -0.9
4,105,542 - -0.2
4,105,714 + -2.4
4,105,714 + -1.1
4,105,751 + +2.8
4,105,751 + +0.8
4,105,752 - +0.7
4,105,752 - +3.5
4,105,752 - -4.0
4,105,752 - -0.7
4,105,816 + +3.0
4,105,858 + -1.5
4,105,859 - -1.0
4,105,900 - +3.0
4,106,063 + +1.8
4,106,063 + +0.8
4,106,063 + +0.7
4,106,063 + -1.4
4,106,154 - -2.2
4,106,159 + -3.8
4,106,160 - -0.3
4,106,160 - +4.3
4,106,186 + Psyr_3441 0.11 +4.3
4,106,187 - Psyr_3441 0.11 -0.8
4,106,187 - Psyr_3441 0.11 +2.8
4,106,225 + Psyr_3441 0.14 -2.3
4,106,225 + Psyr_3441 0.14 -3.0
4,106,225 + Psyr_3441 0.14 -2.8
4,106,225 + Psyr_3441 0.14 +4.3
4,106,226 - Psyr_3441 0.14 +2.1
4,106,226 - Psyr_3441 0.14 -1.0
4,106,228 + Psyr_3441 0.15 -0.4
4,106,228 + Psyr_3441 0.15 -3.2
4,106,228 + Psyr_3441 0.15 -0.8
4,106,228 + Psyr_3441 0.15 +4.1
4,106,228 + Psyr_3441 0.15 +1.4
4,106,228 + Psyr_3441 0.15 +4.0
4,106,228 + Psyr_3441 0.15 +0.1
4,106,229 - Psyr_3441 0.15 +1.8
4,106,229 - Psyr_3441 0.15 -2.6
4,106,229 - Psyr_3441 0.15 -0.2
4,106,229 - Psyr_3441 0.15 -0.3
4,106,229 - Psyr_3441 0.15 +1.3
4,106,232 + Psyr_3441 0.15 -1.1
4,106,232 + Psyr_3441 0.15 -0.2
4,106,233 - Psyr_3441 0.15 +3.0
4,106,233 - Psyr_3441 0.15 +3.9
4,106,233 - Psyr_3441 0.15 +0.0
4,106,233 - Psyr_3441 0.15 +3.0
4,106,360 + Psyr_3441 0.26 +0.8
4,106,361 - Psyr_3441 0.26 +3.6
4,106,361 - Psyr_3441 0.26 +1.5
4,106,466 + Psyr_3441 0.36 +3.6
4,106,466 + Psyr_3441 0.36 -1.0
4,106,466 + Psyr_3441 0.36 +2.6
4,106,467 - Psyr_3441 0.36 -0.1
4,106,467 - Psyr_3441 0.36 +2.6
4,106,467 - Psyr_3441 0.36 +3.1
4,106,467 - Psyr_3441 0.36 -0.3
4,106,467 - Psyr_3441 0.36 +0.4
4,106,467 - Psyr_3441 0.36 -0.0
4,106,467 - Psyr_3441 0.36 +3.8
4,106,555 + Psyr_3441 0.43 -2.2
4,106,555 + Psyr_3441 0.43 -1.2
4,106,555 + Psyr_3441 0.43 -0.2
4,106,555 + Psyr_3441 0.43 +1.4
4,106,555 + Psyr_3441 0.43 -0.4
4,106,555 + Psyr_3441 0.43 +0.8
4,106,556 - Psyr_3441 0.43 +3.5
4,106,556 - Psyr_3441 0.43 +3.1
4,106,556 - Psyr_3441 0.43 +1.2
4,106,556 - Psyr_3441 0.43 +4.3
4,106,556 - Psyr_3441 0.43 -0.5
4,106,556 - Psyr_3441 0.43 +3.3
4,106,591 - Psyr_3441 0.47 -1.3
4,106,591 - Psyr_3441 0.47 -1.2
4,106,966 + Psyr_3441 0.80 +2.4
4,106,966 + Psyr_3441 0.80 +1.7
4,106,966 + Psyr_3441 0.80 +0.1
4,106,966 + Psyr_3441 0.80 -0.3
4,106,966 + Psyr_3441 0.80 +3.1
4,106,966 + Psyr_3441 0.80 +1.4
4,106,966 + Psyr_3441 0.80 -4.5
4,106,966 + Psyr_3441 0.80 +2.4
4,106,967 - Psyr_3441 0.80 +3.7
4,106,967 - Psyr_3441 0.80 +1.4
4,106,967 - Psyr_3441 0.80 -1.6
4,107,258 - -3.1
4,107,316 - Psyr_3442 0.15 +0.1
4,107,316 - Psyr_3442 0.15 +2.8
4,107,316 - Psyr_3442 0.15 +1.1
4,107,415 + Psyr_3442 0.27 -1.2
4,107,474 + Psyr_3442 0.35 +2.1
4,107,624 + Psyr_3442 0.54 +0.7
4,107,693 + Psyr_3442 0.63 +2.3
4,107,842 + Psyr_3442 0.82 -1.8
4,107,842 + Psyr_3442 0.82 +3.3
4,107,842 + Psyr_3442 0.82 -1.2
4,107,843 - Psyr_3442 0.82 +4.2
4,107,843 - Psyr_3442 0.82 -1.2
4,107,843 - Psyr_3442 0.82 -0.6
4,107,843 - Psyr_3442 0.82 +0.2
4,108,012 - +0.9
4,108,012 - -1.3
4,108,019 + Psyr_3443 0.10 +1.8
4,108,020 - Psyr_3443 0.11 -0.3
4,108,034 + Psyr_3443 0.16 -1.6
4,108,034 + Psyr_3443 0.16 -1.6
4,108,034 + Psyr_3443 0.16 -0.6
4,108,034 + Psyr_3443 0.16 +3.6
4,108,034 + Psyr_3443 0.16 -1.6
4,108,034 + Psyr_3443 0.16 +0.8
4,108,034 + Psyr_3443 0.16 +1.4
4,108,034 + Psyr_3443 0.16 -5.2
4,108,035 - Psyr_3443 0.16 -1.3
4,108,035 - Psyr_3443 0.16 -0.7
4,108,035 - Psyr_3443 0.16 -0.6
4,108,035 - Psyr_3443 0.16 +1.4
4,108,045 + Psyr_3443 0.20 -2.5
4,108,046 - Psyr_3443 0.20 +0.5
4,108,046 - Psyr_3443 0.20 +0.2

Or see this region's nucleotide sequence