Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3430 and Psyr_3431 are separated by 45 nucleotides Psyr_3431 and Psyr_3432 are separated by 6 nucleotides Psyr_3432 and Psyr_3433 overlap by 1 nucleotides
Psyr_3430: Psyr_3430 - Cobyrinic acid a,c-diamide synthase, at 4,093,151 to 4,093,939
_3430
Psyr_3431: Psyr_3431 - OmpA/MotB, at 4,093,985 to 4,094,872
_3431
Psyr_3432: Psyr_3432 - MotA/TolQ/ExbB proton channel, at 4,094,879 to 4,095,619
_3432
Psyr_3433: Psyr_3433 - Protein-glutamate methylesterase, at 4,095,619 to 4,096,779
_3433
Position (kb) 4094
4095
4096 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4093.940 kb on + strand at 4093.940 kb on + strand at 4093.940 kb on + strand at 4093.940 kb on + strand at 4093.941 kb on - strand at 4094.147 kb on - strand, within Psyr_3431 at 4094.156 kb on + strand, within Psyr_3431 at 4094.157 kb on - strand, within Psyr_3431 at 4094.594 kb on + strand, within Psyr_3431 at 4094.595 kb on - strand, within Psyr_3431 at 4094.595 kb on - strand, within Psyr_3431 at 4094.595 kb on - strand, within Psyr_3431 at 4094.739 kb on + strand, within Psyr_3431 at 4094.739 kb on + strand, within Psyr_3431 at 4094.739 kb on + strand, within Psyr_3431 at 4094.739 kb on + strand, within Psyr_3431 at 4094.740 kb on - strand, within Psyr_3431 at 4094.740 kb on - strand, within Psyr_3431 at 4094.740 kb on - strand, within Psyr_3431 at 4094.769 kb on + strand, within Psyr_3431 at 4094.769 kb on + strand, within Psyr_3431 at 4094.770 kb on - strand, within Psyr_3431 at 4094.770 kb on - strand, within Psyr_3431 at 4094.770 kb on - strand, within Psyr_3431 at 4094.770 kb on - strand, within Psyr_3431 at 4094.795 kb on + strand at 4094.795 kb on + strand at 4094.800 kb on + strand at 4094.800 kb on + strand at 4094.814 kb on + strand at 4094.815 kb on - strand at 4094.881 kb on - strand at 4094.881 kb on - strand at 4095.048 kb on + strand, within Psyr_3432 at 4095.048 kb on + strand, within Psyr_3432 at 4095.048 kb on + strand, within Psyr_3432 at 4095.048 kb on + strand, within Psyr_3432 at 4095.049 kb on - strand, within Psyr_3432 at 4095.049 kb on - strand, within Psyr_3432 at 4095.611 kb on + strand at 4095.611 kb on + strand at 4095.612 kb on - strand at 4095.612 kb on - strand at 4095.665 kb on + strand at 4095.665 kb on + strand at 4095.666 kb on - strand at 4095.666 kb on - strand at 4095.666 kb on - strand at 4095.713 kb on + strand at 4095.881 kb on + strand, within Psyr_3433 at 4095.881 kb on + strand, within Psyr_3433 at 4095.881 kb on + strand, within Psyr_3433 at 4095.881 kb on + strand, within Psyr_3433 at 4095.983 kb on - strand, within Psyr_3433 at 4096.175 kb on + strand, within Psyr_3433 at 4096.387 kb on - strand, within Psyr_3433 at 4096.387 kb on - strand, within Psyr_3433 at 4096.573 kb on - strand, within Psyr_3433 at 4096.613 kb on + strand, within Psyr_3433
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 4,093,940 + -1.3 4,093,940 + -3.2 4,093,940 + -1.9 4,093,940 + -0.0 4,093,941 - +0.5 4,094,147 - Psyr_3431 0.18 +0.8 4,094,156 + Psyr_3431 0.19 +1.0 4,094,157 - Psyr_3431 0.19 +2.8 4,094,594 + Psyr_3431 0.69 +3.1 4,094,595 - Psyr_3431 0.69 +3.7 4,094,595 - Psyr_3431 0.69 -1.7 4,094,595 - Psyr_3431 0.69 +0.2 4,094,739 + Psyr_3431 0.85 -1.6 4,094,739 + Psyr_3431 0.85 -4.2 4,094,739 + Psyr_3431 0.85 -1.7 4,094,739 + Psyr_3431 0.85 +1.4 4,094,740 - Psyr_3431 0.85 +3.1 4,094,740 - Psyr_3431 0.85 +0.5 4,094,740 - Psyr_3431 0.85 -0.4 4,094,769 + Psyr_3431 0.88 +0.7 4,094,769 + Psyr_3431 0.88 -1.4 4,094,770 - Psyr_3431 0.88 -0.2 4,094,770 - Psyr_3431 0.88 -1.2 4,094,770 - Psyr_3431 0.88 +3.8 4,094,770 - Psyr_3431 0.88 -0.3 4,094,795 + -0.2 4,094,795 + +2.4 4,094,800 + -4.5 4,094,800 + +1.8 4,094,814 + -2.4 4,094,815 - -0.2 4,094,881 - -0.4 4,094,881 - -1.1 4,095,048 + Psyr_3432 0.23 +1.4 4,095,048 + Psyr_3432 0.23 +1.4 4,095,048 + Psyr_3432 0.23 +3.7 4,095,048 + Psyr_3432 0.23 -0.6 4,095,049 - Psyr_3432 0.23 +2.4 4,095,049 - Psyr_3432 0.23 +2.1 4,095,611 + -2.1 4,095,611 + +3.0 4,095,612 - +2.6 4,095,612 - -0.1 4,095,665 + -3.6 4,095,665 + +1.4 4,095,666 - +0.8 4,095,666 - +1.8 4,095,666 - +2.8 4,095,713 + -1.5 4,095,881 + Psyr_3433 0.23 -2.5 4,095,881 + Psyr_3433 0.23 -0.2 4,095,881 + Psyr_3433 0.23 +2.1 4,095,881 + Psyr_3433 0.23 +2.4 4,095,983 - Psyr_3433 0.31 -2.1 4,096,175 + Psyr_3433 0.48 +1.8 4,096,387 - Psyr_3433 0.66 +2.6 4,096,387 - Psyr_3433 0.66 -0.9 4,096,573 - Psyr_3433 0.82 -3.0 4,096,613 + Psyr_3433 0.86 +0.3
Or see this region's nucleotide sequence