Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3306

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3305 and Psyr_3306 are separated by 1 nucleotidesPsyr_3306 and Psyr_3307 are separated by 3 nucleotides Psyr_3305: Psyr_3305 - Glycosyl transferase, group 1, at 3,955,601 to 3,956,779 _3305 Psyr_3306: Psyr_3306 - Glycoside hydrolase, family 5, at 3,956,781 to 3,958,094 _3306 Psyr_3307: Psyr_3307 - Glycosyl transferase, group 1, at 3,958,098 to 3,959,315 _3307 Position (kb) 3956 3957 3958 3959Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 3956.180 kb on + strand, within Psyr_3305at 3956.180 kb on + strand, within Psyr_3305at 3956.181 kb on - strand, within Psyr_3305at 3956.181 kb on - strand, within Psyr_3305at 3956.547 kb on + strand, within Psyr_3305at 3956.547 kb on + strand, within Psyr_3305at 3956.547 kb on + strand, within Psyr_3305at 3956.607 kb on - strand, within Psyr_3305at 3956.729 kb on - strandat 3956.751 kb on + strandat 3956.751 kb on + strandat 3956.751 kb on + strandat 3956.751 kb on + strandat 3956.751 kb on + strandat 3956.751 kb on + strandat 3956.751 kb on + strandat 3956.752 kb on - strandat 3956.752 kb on - strandat 3956.752 kb on - strandat 3956.928 kb on + strand, within Psyr_3306at 3956.946 kb on + strand, within Psyr_3306at 3956.946 kb on + strand, within Psyr_3306at 3956.946 kb on + strand, within Psyr_3306at 3956.947 kb on - strand, within Psyr_3306at 3956.947 kb on - strand, within Psyr_3306at 3956.947 kb on - strand, within Psyr_3306at 3956.947 kb on - strand, within Psyr_3306at 3957.039 kb on + strand, within Psyr_3306at 3957.090 kb on + strand, within Psyr_3306at 3957.090 kb on + strand, within Psyr_3306at 3957.090 kb on + strand, within Psyr_3306at 3957.090 kb on + strand, within Psyr_3306at 3957.090 kb on + strand, within Psyr_3306at 3957.091 kb on - strand, within Psyr_3306at 3957.091 kb on - strand, within Psyr_3306at 3957.091 kb on - strand, within Psyr_3306at 3957.091 kb on - strand, within Psyr_3306at 3957.091 kb on - strand, within Psyr_3306at 3957.105 kb on + strand, within Psyr_3306at 3957.301 kb on - strand, within Psyr_3306at 3957.381 kb on + strand, within Psyr_3306at 3957.381 kb on + strand, within Psyr_3306at 3957.381 kb on + strand, within Psyr_3306at 3957.381 kb on + strand, within Psyr_3306at 3957.382 kb on - strand, within Psyr_3306at 3957.382 kb on - strand, within Psyr_3306at 3957.382 kb on - strand, within Psyr_3306at 3957.384 kb on + strand, within Psyr_3306at 3957.384 kb on + strand, within Psyr_3306at 3957.384 kb on + strand, within Psyr_3306at 3957.385 kb on - strand, within Psyr_3306at 3957.385 kb on - strand, within Psyr_3306at 3957.385 kb on - strand, within Psyr_3306at 3957.385 kb on - strand, within Psyr_3306at 3957.412 kb on - strand, within Psyr_3306at 3957.606 kb on + strand, within Psyr_3306at 3957.606 kb on + strand, within Psyr_3306at 3957.607 kb on - strand, within Psyr_3306at 3957.660 kb on + strand, within Psyr_3306at 3957.660 kb on + strand, within Psyr_3306at 3957.660 kb on + strand, within Psyr_3306at 3957.661 kb on - strand, within Psyr_3306at 3957.804 kb on + strand, within Psyr_3306at 3957.804 kb on + strand, within Psyr_3306at 3957.804 kb on + strand, within Psyr_3306at 3957.804 kb on + strand, within Psyr_3306at 3957.804 kb on + strand, within Psyr_3306at 3957.804 kb on + strand, within Psyr_3306at 3957.804 kb on + strand, within Psyr_3306at 3957.805 kb on - strand, within Psyr_3306at 3957.805 kb on - strand, within Psyr_3306at 3957.805 kb on - strand, within Psyr_3306at 3957.881 kb on - strand, within Psyr_3306at 3957.894 kb on + strand, within Psyr_3306at 3957.895 kb on - strand, within Psyr_3306at 3958.165 kb on - strandat 3958.317 kb on - strand, within Psyr_3307at 3958.446 kb on + strand, within Psyr_3307at 3958.446 kb on + strand, within Psyr_3307at 3958.446 kb on + strand, within Psyr_3307at 3958.446 kb on + strand, within Psyr_3307at 3958.446 kb on + strand, within Psyr_3307at 3958.446 kb on + strand, within Psyr_3307at 3958.447 kb on - strand, within Psyr_3307at 3958.447 kb on - strand, within Psyr_3307at 3958.447 kb on - strand, within Psyr_3307at 3958.447 kb on - strand, within Psyr_3307at 3958.447 kb on - strand, within Psyr_3307at 3958.447 kb on - strand, within Psyr_3307at 3958.447 kb on - strand, within Psyr_3307at 3958.447 kb on - strand, within Psyr_3307at 3958.447 kb on - strand, within Psyr_3307at 3958.447 kb on - strand, within Psyr_3307at 3958.447 kb on - strand, within Psyr_3307at 3958.542 kb on + strand, within Psyr_3307at 3958.542 kb on + strand, within Psyr_3307at 3958.581 kb on + strand, within Psyr_3307at 3958.582 kb on - strand, within Psyr_3307at 3958.669 kb on + strand, within Psyr_3307at 3958.670 kb on - strand, within Psyr_3307at 3958.701 kb on + strand, within Psyr_3307at 3958.701 kb on + strand, within Psyr_3307at 3958.701 kb on + strand, within Psyr_3307at 3958.702 kb on - strand, within Psyr_3307at 3958.702 kb on - strand, within Psyr_3307at 3958.702 kb on - strand, within Psyr_3307at 3958.702 kb on - strand, within Psyr_3307at 3958.702 kb on - strand, within Psyr_3307at 3958.728 kb on + strand, within Psyr_3307at 3958.729 kb on - strand, within Psyr_3307at 3958.729 kb on - strand, within Psyr_3307at 3958.732 kb on - strand, within Psyr_3307at 3958.732 kb on - strand, within Psyr_3307at 3958.785 kb on + strand, within Psyr_3307at 3958.785 kb on + strand, within Psyr_3307at 3958.785 kb on + strand, within Psyr_3307at 3958.785 kb on + strand, within Psyr_3307at 3958.785 kb on + strand, within Psyr_3307at 3958.786 kb on - strand, within Psyr_3307at 3958.786 kb on - strand, within Psyr_3307at 3958.786 kb on - strand, within Psyr_3307at 3958.786 kb on - strand, within Psyr_3307at 3958.786 kb on - strand, within Psyr_3307at 3958.786 kb on - strand, within Psyr_3307at 3958.791 kb on + strand, within Psyr_3307at 3958.867 kb on + strand, within Psyr_3307at 3958.867 kb on + strand, within Psyr_3307at 3958.867 kb on + strand, within Psyr_3307at 3958.867 kb on + strand, within Psyr_3307at 3958.868 kb on - strand, within Psyr_3307at 3958.868 kb on - strand, within Psyr_3307at 3958.868 kb on - strand, within Psyr_3307at 3958.868 kb on - strand, within Psyr_3307at 3958.868 kb on - strand, within Psyr_3307at 3958.868 kb on - strand, within Psyr_3307

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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3,956,180 + Psyr_3305 0.49 -0.2
3,956,180 + Psyr_3305 0.49 -0.4
3,956,181 - Psyr_3305 0.49 +0.7
3,956,181 - Psyr_3305 0.49 +3.4
3,956,547 + Psyr_3305 0.80 +4.0
3,956,547 + Psyr_3305 0.80 -0.4
3,956,547 + Psyr_3305 0.80 +2.8
3,956,607 - Psyr_3305 0.85 +4.0
3,956,729 - +4.2
3,956,751 + +0.8
3,956,751 + +1.4
3,956,751 + -0.5
3,956,751 + -3.4
3,956,751 + -3.5
3,956,751 + -2.5
3,956,751 + -0.6
3,956,752 - -1.9
3,956,752 - +3.5
3,956,752 - +0.5
3,956,928 + Psyr_3306 0.11 +1.7
3,956,946 + Psyr_3306 0.13 +1.8
3,956,946 + Psyr_3306 0.13 -0.7
3,956,946 + Psyr_3306 0.13 -0.2
3,956,947 - Psyr_3306 0.13 +2.6
3,956,947 - Psyr_3306 0.13 +0.3
3,956,947 - Psyr_3306 0.13 -0.2
3,956,947 - Psyr_3306 0.13 -4.3
3,957,039 + Psyr_3306 0.20 +1.4
3,957,090 + Psyr_3306 0.24 +3.9
3,957,090 + Psyr_3306 0.24 -0.3
3,957,090 + Psyr_3306 0.24 +2.8
3,957,090 + Psyr_3306 0.24 +1.5
3,957,090 + Psyr_3306 0.24 +3.9
3,957,091 - Psyr_3306 0.24 -0.5
3,957,091 - Psyr_3306 0.24 -2.2
3,957,091 - Psyr_3306 0.24 +2.2
3,957,091 - Psyr_3306 0.24 -0.5
3,957,091 - Psyr_3306 0.24 +1.9
3,957,105 + Psyr_3306 0.25 +0.8
3,957,301 - Psyr_3306 0.40 -3.1
3,957,381 + Psyr_3306 0.46 +3.1
3,957,381 + Psyr_3306 0.46 +2.8
3,957,381 + Psyr_3306 0.46 -1.2
3,957,381 + Psyr_3306 0.46 +3.1
3,957,382 - Psyr_3306 0.46 +2.1
3,957,382 - Psyr_3306 0.46 +0.8
3,957,382 - Psyr_3306 0.46 +0.8
3,957,384 + Psyr_3306 0.46 -1.5
3,957,384 + Psyr_3306 0.46 -2.9
3,957,384 + Psyr_3306 0.46 +3.8
3,957,385 - Psyr_3306 0.46 +2.8
3,957,385 - Psyr_3306 0.46 -3.1
3,957,385 - Psyr_3306 0.46 -2.8
3,957,385 - Psyr_3306 0.46 +2.1
3,957,412 - Psyr_3306 0.48 +1.8
3,957,606 + Psyr_3306 0.63 -0.9
3,957,606 + Psyr_3306 0.63 -0.5
3,957,607 - Psyr_3306 0.63 +0.8
3,957,660 + Psyr_3306 0.67 +0.8
3,957,660 + Psyr_3306 0.67 +0.3
3,957,660 + Psyr_3306 0.67 +1.4
3,957,661 - Psyr_3306 0.67 -0.0
3,957,804 + Psyr_3306 0.78 -2.6
3,957,804 + Psyr_3306 0.78 -3.1
3,957,804 + Psyr_3306 0.78 -1.6
3,957,804 + Psyr_3306 0.78 +2.8
3,957,804 + Psyr_3306 0.78 -0.1
3,957,804 + Psyr_3306 0.78 +2.4
3,957,804 + Psyr_3306 0.78 +3.1
3,957,805 - Psyr_3306 0.78 +2.6
3,957,805 - Psyr_3306 0.78 -0.4
3,957,805 - Psyr_3306 0.78 -3.5
3,957,881 - Psyr_3306 0.84 -0.2
3,957,894 + Psyr_3306 0.85 -0.2
3,957,895 - Psyr_3306 0.85 +2.4
3,958,165 - -4.8
3,958,317 - Psyr_3307 0.18 +2.9
3,958,446 + Psyr_3307 0.29 +3.1
3,958,446 + Psyr_3307 0.29 -1.6
3,958,446 + Psyr_3307 0.29 -3.3
3,958,446 + Psyr_3307 0.29 +1.1
3,958,446 + Psyr_3307 0.29 -0.1
3,958,446 + Psyr_3307 0.29 +1.4
3,958,447 - Psyr_3307 0.29 -0.4
3,958,447 - Psyr_3307 0.29 -3.6
3,958,447 - Psyr_3307 0.29 +3.4
3,958,447 - Psyr_3307 0.29 -2.0
3,958,447 - Psyr_3307 0.29 +3.5
3,958,447 - Psyr_3307 0.29 +2.8
3,958,447 - Psyr_3307 0.29 +3.5
3,958,447 - Psyr_3307 0.29 +3.2
3,958,447 - Psyr_3307 0.29 +1.4
3,958,447 - Psyr_3307 0.29 -2.8
3,958,447 - Psyr_3307 0.29 -0.8
3,958,542 + Psyr_3307 0.36 +2.4
3,958,542 + Psyr_3307 0.36 -2.6
3,958,581 + Psyr_3307 0.40 -3.2
3,958,582 - Psyr_3307 0.40 -1.4
3,958,669 + Psyr_3307 0.47 -0.7
3,958,670 - Psyr_3307 0.47 -1.6
3,958,701 + Psyr_3307 0.50 +2.6
3,958,701 + Psyr_3307 0.50 +0.8
3,958,701 + Psyr_3307 0.50 -0.2
3,958,702 - Psyr_3307 0.50 -0.8
3,958,702 - Psyr_3307 0.50 +1.8
3,958,702 - Psyr_3307 0.50 +2.8
3,958,702 - Psyr_3307 0.50 -1.8
3,958,702 - Psyr_3307 0.50 -1.5
3,958,728 + Psyr_3307 0.52 +4.0
3,958,729 - Psyr_3307 0.52 -1.4
3,958,729 - Psyr_3307 0.52 +1.4
3,958,732 - Psyr_3307 0.52 +2.1
3,958,732 - Psyr_3307 0.52 +2.9
3,958,785 + Psyr_3307 0.56 +0.3
3,958,785 + Psyr_3307 0.56 +4.0
3,958,785 + Psyr_3307 0.56 +1.8
3,958,785 + Psyr_3307 0.56 +4.6
3,958,785 + Psyr_3307 0.56 -2.9
3,958,786 - Psyr_3307 0.56 +2.1
3,958,786 - Psyr_3307 0.56 -0.5
3,958,786 - Psyr_3307 0.56 -3.5
3,958,786 - Psyr_3307 0.56 +0.8
3,958,786 - Psyr_3307 0.56 +2.9
3,958,786 - Psyr_3307 0.56 -2.2
3,958,791 + Psyr_3307 0.57 -3.0
3,958,867 + Psyr_3307 0.63 -1.4
3,958,867 + Psyr_3307 0.63 -0.2
3,958,867 + Psyr_3307 0.63 +0.8
3,958,867 + Psyr_3307 0.63 -4.3
3,958,868 - Psyr_3307 0.63 +1.8
3,958,868 - Psyr_3307 0.63 +2.9
3,958,868 - Psyr_3307 0.63 -1.7
3,958,868 - Psyr_3307 0.63 -3.1
3,958,868 - Psyr_3307 0.63 +3.5
3,958,868 - Psyr_3307 0.63 +1.6

Or see this region's nucleotide sequence