Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3156

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3154 and Psyr_3155 are separated by 113 nucleotidesPsyr_3155 and Psyr_3156 are separated by 17 nucleotidesPsyr_3156 and Psyr_3157 are separated by 263 nucleotides Psyr_3154: Psyr_3154 - transcriptional regulator, TetR family, at 3,780,456 to 3,781,100 _3154 Psyr_3155: Psyr_3155 - GCN5-related N-acetyltransferase, at 3,781,214 to 3,781,753 _3155 Psyr_3156: Psyr_3156 - transcriptional regulator, LysR family, at 3,781,771 to 3,782,748 _3156 Psyr_3157: Psyr_3157 - Aldehyde dehydrogenase, at 3,783,012 to 3,784,595 _3157 Position (kb) 3781 3782 3783Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3780.974 kb on + strand, within Psyr_3154at 3780.976 kb on + strand, within Psyr_3154at 3780.976 kb on + strand, within Psyr_3154at 3780.976 kb on + strand, within Psyr_3154at 3781.100 kb on + strandat 3781.101 kb on - strandat 3781.101 kb on - strandat 3781.133 kb on - strandat 3781.193 kb on + strandat 3781.194 kb on - strandat 3781.194 kb on - strandat 3781.485 kb on + strand, within Psyr_3155at 3781.485 kb on + strand, within Psyr_3155at 3781.485 kb on + strand, within Psyr_3155at 3781.485 kb on + strand, within Psyr_3155at 3781.485 kb on + strand, within Psyr_3155at 3781.486 kb on - strand, within Psyr_3155at 3781.486 kb on - strand, within Psyr_3155at 3781.486 kb on - strand, within Psyr_3155at 3781.486 kb on - strand, within Psyr_3155at 3781.486 kb on - strand, within Psyr_3155at 3781.542 kb on + strand, within Psyr_3155at 3781.542 kb on + strand, within Psyr_3155at 3781.542 kb on + strand, within Psyr_3155at 3781.542 kb on + strand, within Psyr_3155at 3781.542 kb on + strand, within Psyr_3155at 3781.542 kb on + strand, within Psyr_3155at 3781.543 kb on - strand, within Psyr_3155at 3781.543 kb on - strand, within Psyr_3155at 3781.543 kb on - strand, within Psyr_3155at 3781.543 kb on - strand, within Psyr_3155at 3781.543 kb on - strand, within Psyr_3155at 3781.543 kb on - strand, within Psyr_3155at 3781.543 kb on - strand, within Psyr_3155at 3781.549 kb on - strand, within Psyr_3155at 3781.582 kb on + strand, within Psyr_3155at 3781.582 kb on + strand, within Psyr_3155at 3781.582 kb on + strand, within Psyr_3155at 3781.582 kb on + strand, within Psyr_3155at 3781.582 kb on + strand, within Psyr_3155at 3781.582 kb on + strand, within Psyr_3155at 3781.582 kb on + strand, within Psyr_3155at 3781.582 kb on + strand, within Psyr_3155at 3781.582 kb on + strand, within Psyr_3155at 3781.583 kb on - strand, within Psyr_3155at 3781.583 kb on - strand, within Psyr_3155at 3781.583 kb on - strand, within Psyr_3155at 3781.583 kb on - strand, within Psyr_3155at 3781.583 kb on - strand, within Psyr_3155at 3781.583 kb on - strand, within Psyr_3155at 3781.583 kb on - strand, within Psyr_3155at 3781.583 kb on - strand, within Psyr_3155at 3781.583 kb on - strand, within Psyr_3155at 3781.584 kb on + strand, within Psyr_3155at 3781.584 kb on + strand, within Psyr_3155at 3781.584 kb on + strand, within Psyr_3155at 3781.584 kb on + strand, within Psyr_3155at 3781.584 kb on + strand, within Psyr_3155at 3781.584 kb on + strand, within Psyr_3155at 3781.584 kb on + strand, within Psyr_3155at 3781.584 kb on + strand, within Psyr_3155at 3781.584 kb on + strand, within Psyr_3155at 3781.584 kb on + strand, within Psyr_3155at 3781.585 kb on - strand, within Psyr_3155at 3781.585 kb on - strand, within Psyr_3155at 3781.585 kb on - strand, within Psyr_3155at 3781.585 kb on - strandat 3781.585 kb on - strand, within Psyr_3155at 3781.585 kb on - strand, within Psyr_3155at 3781.585 kb on - strand, within Psyr_3155at 3781.585 kb on - strand, within Psyr_3155at 3781.585 kb on - strand, within Psyr_3155at 3781.585 kb on - strand, within Psyr_3155at 3781.585 kb on - strand, within Psyr_3155at 3781.585 kb on - strand, within Psyr_3155at 3781.674 kb on - strand, within Psyr_3155at 3781.690 kb on - strand, within Psyr_3155at 3781.701 kb on - strandat 3781.766 kb on + strandat 3781.767 kb on - strandat 3781.821 kb on + strandat 3781.822 kb on - strandat 3781.842 kb on + strandat 3782.037 kb on + strand, within Psyr_3156at 3782.038 kb on - strand, within Psyr_3156at 3782.054 kb on + strand, within Psyr_3156at 3782.054 kb on + strand, within Psyr_3156at 3782.054 kb on + strand, within Psyr_3156at 3782.055 kb on - strand, within Psyr_3156at 3782.055 kb on - strand, within Psyr_3156at 3782.055 kb on - strand, within Psyr_3156at 3782.068 kb on - strand, within Psyr_3156at 3782.338 kb on - strand, within Psyr_3156at 3782.338 kb on - strand, within Psyr_3156at 3782.572 kb on + strand, within Psyr_3156at 3782.573 kb on - strand, within Psyr_3156at 3782.731 kb on + strandat 3782.731 kb on + strandat 3782.731 kb on + strandat 3782.732 kb on - strandat 3782.787 kb on + strandat 3782.787 kb on + strandat 3782.787 kb on + strandat 3782.787 kb on + strandat 3782.788 kb on - strandat 3782.788 kb on - strandat 3782.788 kb on - strandat 3782.788 kb on - strandat 3782.789 kb on + strandat 3782.789 kb on + strandat 3782.789 kb on + strandat 3782.789 kb on + strandat 3782.790 kb on - strandat 3782.790 kb on - strandat 3782.790 kb on - strandat 3782.790 kb on - strandat 3782.818 kb on + strandat 3782.818 kb on + strandat 3782.818 kb on + strandat 3782.818 kb on + strandat 3782.818 kb on + strandat 3782.819 kb on - strandat 3782.819 kb on - strandat 3782.819 kb on - strandat 3782.819 kb on - strandat 3782.903 kb on + strandat 3782.928 kb on + strandat 3782.929 kb on - strandat 3783.008 kb on - strandat 3783.017 kb on + strandat 3783.017 kb on + strandat 3783.018 kb on - strandat 3783.115 kb on - strandat 3783.115 kb on - strandat 3783.524 kb on + strand, within Psyr_3157at 3783.632 kb on + strand, within Psyr_3157

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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3,780,974 + Psyr_3154 0.80 -3.0
3,780,976 + Psyr_3154 0.81 -0.3
3,780,976 + Psyr_3154 0.81 -0.4
3,780,976 + Psyr_3154 0.81 +0.7
3,781,100 + -0.3
3,781,101 - +1.7
3,781,101 - +3.3
3,781,133 - -0.8
3,781,193 + +2.6
3,781,194 - -0.3
3,781,194 - -1.3
3,781,485 + Psyr_3155 0.50 -0.3
3,781,485 + Psyr_3155 0.50 -2.1
3,781,485 + Psyr_3155 0.50 +0.6
3,781,485 + Psyr_3155 0.50 +3.4
3,781,485 + Psyr_3155 0.50 -1.9
3,781,486 - Psyr_3155 0.50 -0.7
3,781,486 - Psyr_3155 0.50 -0.3
3,781,486 - Psyr_3155 0.50 -1.0
3,781,486 - Psyr_3155 0.50 +1.7
3,781,486 - Psyr_3155 0.50 +3.6
3,781,542 + Psyr_3155 0.61 +0.6
3,781,542 + Psyr_3155 0.61 -4.0
3,781,542 + Psyr_3155 0.61 -1.0
3,781,542 + Psyr_3155 0.61 -1.5
3,781,542 + Psyr_3155 0.61 +2.3
3,781,542 + Psyr_3155 0.61 +0.6
3,781,543 - Psyr_3155 0.61 +2.3
3,781,543 - Psyr_3155 0.61 -0.3
3,781,543 - Psyr_3155 0.61 +0.1
3,781,543 - Psyr_3155 0.61 -2.7
3,781,543 - Psyr_3155 0.61 +3.6
3,781,543 - Psyr_3155 0.61 -3.1
3,781,543 - Psyr_3155 0.61 -0.1
3,781,549 - Psyr_3155 0.62 +4.6
3,781,582 + Psyr_3155 0.68 +2.3
3,781,582 + Psyr_3155 0.68 -1.4
3,781,582 + Psyr_3155 0.68 -0.4
3,781,582 + Psyr_3155 0.68 +1.7
3,781,582 + Psyr_3155 0.68 +0.2
3,781,582 + Psyr_3155 0.68 -1.9
3,781,582 + Psyr_3155 0.68 +3.3
3,781,582 + Psyr_3155 0.68 -1.3
3,781,582 + Psyr_3155 0.68 +2.6
3,781,583 - Psyr_3155 0.68 -2.1
3,781,583 - Psyr_3155 0.68 +1.3
3,781,583 - Psyr_3155 0.68 -0.3
3,781,583 - Psyr_3155 0.68 +3.1
3,781,583 - Psyr_3155 0.68 +4.1
3,781,583 - Psyr_3155 0.68 +2.7
3,781,583 - Psyr_3155 0.68 -0.2
3,781,583 - Psyr_3155 0.68 +1.3
3,781,583 - Psyr_3155 0.68 -1.4
3,781,584 + Psyr_3155 0.69 +3.1
3,781,584 + Psyr_3155 0.69 -0.5
3,781,584 + Psyr_3155 0.69 +3.1
3,781,584 + Psyr_3155 0.69 -0.5
3,781,584 + Psyr_3155 0.69 -0.5
3,781,584 + Psyr_3155 0.69 +3.2
3,781,584 + Psyr_3155 0.69 +3.9
3,781,584 + Psyr_3155 0.69 +3.1
3,781,584 + Psyr_3155 0.69 -3.1
3,781,584 + Psyr_3155 0.69 -0.1
3,781,585 - Psyr_3155 0.69 -1.5
3,781,585 - Psyr_3155 0.69 -0.1
3,781,585 - Psyr_3155 0.69 -1.4
3,781,585 - +1.3
3,781,585 - Psyr_3155 0.69 +2.1
3,781,585 - Psyr_3155 0.69 -1.2
3,781,585 - Psyr_3155 0.69 -0.5
3,781,585 - Psyr_3155 0.69 -4.2
3,781,585 - Psyr_3155 0.69 +2.6
3,781,585 - Psyr_3155 0.69 -1.8
3,781,585 - Psyr_3155 0.69 +0.9
3,781,585 - Psyr_3155 0.69 -1.5
3,781,674 - Psyr_3155 0.85 -2.5
3,781,690 - Psyr_3155 0.88 +0.7
3,781,701 - -1.8
3,781,766 + -0.6
3,781,767 - +1.7
3,781,821 + -1.6
3,781,822 - +1.6
3,781,842 + +3.9
3,782,037 + Psyr_3156 0.27 -1.3
3,782,038 - Psyr_3156 0.27 +2.9
3,782,054 + Psyr_3156 0.29 -0.0
3,782,054 + Psyr_3156 0.29 -0.3
3,782,054 + Psyr_3156 0.29 -0.7
3,782,055 - Psyr_3156 0.29 +3.2
3,782,055 - Psyr_3156 0.29 +2.3
3,782,055 - Psyr_3156 0.29 +1.5
3,782,068 - Psyr_3156 0.30 +2.0
3,782,338 - Psyr_3156 0.58 +1.3
3,782,338 - Psyr_3156 0.58 -2.1
3,782,572 + Psyr_3156 0.82 +3.4
3,782,573 - Psyr_3156 0.82 +2.0
3,782,731 + -1.5
3,782,731 + -0.0
3,782,731 + +4.0
3,782,732 - +1.3
3,782,787 + +3.0
3,782,787 + +3.6
3,782,787 + +3.4
3,782,787 + -0.8
3,782,788 - +1.3
3,782,788 - +1.0
3,782,788 - +0.7
3,782,788 - -1.8
3,782,789 + -1.9
3,782,789 + -1.6
3,782,789 + +0.3
3,782,789 + +0.4
3,782,790 - -0.7
3,782,790 - +0.4
3,782,790 - -0.6
3,782,790 - +3.2
3,782,818 + -2.6
3,782,818 + +4.0
3,782,818 + -2.3
3,782,818 + -1.4
3,782,818 + +2.0
3,782,819 - -0.3
3,782,819 - -1.1
3,782,819 - +2.3
3,782,819 - +3.2
3,782,903 + -0.4
3,782,928 + +2.0
3,782,929 - +2.7
3,783,008 - +0.7
3,783,017 + -2.0
3,783,017 + -1.0
3,783,018 - +0.7
3,783,115 - -2.1
3,783,115 - -1.8
3,783,524 + Psyr_3157 0.32 +2.7
3,783,632 + Psyr_3157 0.39 -1.6

Or see this region's nucleotide sequence