Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3150 and Psyr_3151 overlap by 4 nucleotides Psyr_3151 and Psyr_3152 are separated by 50 nucleotides Psyr_3152 and Psyr_3153 are separated by 427 nucleotides
Psyr_3150: Psyr_3150 - type II secretion system protein, at 3,773,948 to 3,775,150
_3150
Psyr_3151: Psyr_3151 - type II secretion system protein E (GspE), at 3,775,147 to 3,776,904
_3151
Psyr_3152: Psyr_3152 - hypothetical protein, at 3,776,955 to 3,777,248
_3152
Psyr_3153: Psyr_3153 - Beta-glucosidase, at 3,777,676 to 3,780,417
_3153
Position (kb) 3775
3776
3777 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 3774.592 kb on - strand, within Psyr_3150 at 3774.646 kb on - strand, within Psyr_3150 at 3774.718 kb on + strand, within Psyr_3150 at 3774.718 kb on + strand, within Psyr_3150 at 3774.719 kb on - strand, within Psyr_3150 at 3774.761 kb on + strand, within Psyr_3150 at 3774.761 kb on + strand, within Psyr_3150 at 3774.761 kb on + strand, within Psyr_3150 at 3774.761 kb on + strand, within Psyr_3150 at 3774.761 kb on + strand, within Psyr_3150 at 3774.761 kb on + strand, within Psyr_3150 at 3774.761 kb on + strand, within Psyr_3150 at 3774.761 kb on + strand, within Psyr_3150 at 3774.761 kb on + strand, within Psyr_3150 at 3774.761 kb on + strand, within Psyr_3150 at 3774.761 kb on + strand, within Psyr_3150 at 3774.761 kb on + strand, within Psyr_3150 at 3774.761 kb on + strand, within Psyr_3150 at 3774.761 kb on + strand, within Psyr_3150 at 3774.761 kb on + strand, within Psyr_3150 at 3774.761 kb on + strand, within Psyr_3150 at 3774.761 kb on + strand, within Psyr_3150 at 3774.761 kb on + strand, within Psyr_3150 at 3774.761 kb on + strand, within Psyr_3150 at 3774.761 kb on + strand, within Psyr_3150 at 3774.761 kb on + strand, within Psyr_3150 at 3774.761 kb on + strand, within Psyr_3150 at 3774.761 kb on + strand, within Psyr_3150 at 3774.761 kb on + strand, within Psyr_3150 at 3774.761 kb on + strand, within Psyr_3150 at 3774.761 kb on + strand, within Psyr_3150 at 3774.761 kb on + strand, within Psyr_3150 at 3774.762 kb on - strand, within Psyr_3150 at 3774.762 kb on - strand, within Psyr_3150 at 3774.762 kb on - strand, within Psyr_3150 at 3774.762 kb on - strand, within Psyr_3150 at 3774.762 kb on - strand, within Psyr_3150 at 3774.762 kb on - strand, within Psyr_3150 at 3774.762 kb on - strand, within Psyr_3150 at 3774.762 kb on - strand, within Psyr_3150 at 3774.762 kb on - strand, within Psyr_3150 at 3774.762 kb on - strand, within Psyr_3150 at 3774.762 kb on - strand, within Psyr_3150 at 3774.762 kb on - strand, within Psyr_3150 at 3774.762 kb on - strand, within Psyr_3150 at 3774.762 kb on - strand, within Psyr_3150 at 3774.762 kb on - strand, within Psyr_3150 at 3774.762 kb on - strand, within Psyr_3150 at 3774.762 kb on - strand, within Psyr_3150 at 3774.762 kb on - strand, within Psyr_3150 at 3774.762 kb on - strand, within Psyr_3150 at 3774.762 kb on - strand, within Psyr_3150 at 3774.762 kb on - strand, within Psyr_3150 at 3774.762 kb on - strand, within Psyr_3150 at 3774.762 kb on - strand, within Psyr_3150 at 3774.762 kb on - strand, within Psyr_3150 at 3774.762 kb on - strand, within Psyr_3150 at 3774.762 kb on - strand, within Psyr_3150 at 3774.762 kb on - strand, within Psyr_3150 at 3774.762 kb on - strand, within Psyr_3150 at 3774.762 kb on - strand, within Psyr_3150 at 3774.762 kb on - strand, within Psyr_3150 at 3774.762 kb on - strand, within Psyr_3150 at 3774.763 kb on + strand, within Psyr_3150 at 3774.763 kb on + strand, within Psyr_3150 at 3774.763 kb on + strand, within Psyr_3150 at 3774.763 kb on + strand, within Psyr_3150 at 3774.763 kb on + strand, within Psyr_3150 at 3774.763 kb on + strand, within Psyr_3150 at 3774.763 kb on + strand at 3774.763 kb on + strand, within Psyr_3150 at 3774.763 kb on + strand, within Psyr_3150 at 3774.763 kb on + strand, within Psyr_3150 at 3774.763 kb on + strand, within Psyr_3150 at 3774.764 kb on - strand, within Psyr_3150 at 3774.764 kb on - strand, within Psyr_3150 at 3774.764 kb on - strand, within Psyr_3150 at 3774.764 kb on - strand, within Psyr_3150 at 3774.764 kb on - strand, within Psyr_3150 at 3774.764 kb on - strand, within Psyr_3150 at 3774.764 kb on - strand, within Psyr_3150 at 3774.764 kb on - strand, within Psyr_3150 at 3774.765 kb on + strand, within Psyr_3150 at 3774.765 kb on + strand, within Psyr_3150 at 3774.765 kb on + strand, within Psyr_3150 at 3774.765 kb on + strand, within Psyr_3150 at 3774.765 kb on + strand, within Psyr_3150 at 3774.765 kb on + strand, within Psyr_3150 at 3774.765 kb on + strand, within Psyr_3150 at 3774.766 kb on - strand, within Psyr_3150 at 3774.766 kb on - strand, within Psyr_3150 at 3774.766 kb on - strand, within Psyr_3150 at 3774.766 kb on - strand, within Psyr_3150 at 3774.766 kb on - strand, within Psyr_3150 at 3774.766 kb on - strand, within Psyr_3150 at 3774.766 kb on - strand, within Psyr_3150 at 3775.344 kb on + strand, within Psyr_3151 at 3775.345 kb on - strand, within Psyr_3151 at 3775.388 kb on + strand, within Psyr_3151 at 3775.538 kb on + strand, within Psyr_3151 at 3775.539 kb on - strand, within Psyr_3151 at 3775.573 kb on - strand, within Psyr_3151 at 3775.847 kb on + strand, within Psyr_3151 at 3775.847 kb on + strand, within Psyr_3151 at 3775.848 kb on - strand, within Psyr_3151 at 3775.848 kb on - strand, within Psyr_3151 at 3775.848 kb on - strand, within Psyr_3151 at 3775.848 kb on - strand, within Psyr_3151 at 3775.848 kb on - strand, within Psyr_3151 at 3775.849 kb on - strand, within Psyr_3151 at 3776.266 kb on + strand, within Psyr_3151 at 3776.412 kb on - strand, within Psyr_3151 at 3776.484 kb on - strand, within Psyr_3151 at 3776.722 kb on + strand, within Psyr_3151 at 3776.734 kb on - strand at 3776.904 kb on + strand at 3776.904 kb on + strand at 3776.904 kb on + strand at 3776.904 kb on + strand at 3776.904 kb on + strand at 3776.904 kb on + strand at 3776.904 kb on + strand at 3776.904 kb on + strand at 3776.904 kb on + strand at 3776.904 kb on + strand at 3776.904 kb on + strand at 3776.905 kb on - strand at 3776.905 kb on - strand at 3776.905 kb on - strand at 3776.905 kb on - strand at 3776.905 kb on - strand at 3776.905 kb on - strand at 3776.905 kb on - strand at 3776.905 kb on - strand at 3776.905 kb on - strand at 3776.905 kb on - strand at 3776.905 kb on - strand at 3776.905 kb on - strand at 3776.905 kb on - strand at 3776.905 kb on - strand at 3776.905 kb on - strand at 3776.907 kb on + strand at 3776.907 kb on + strand at 3776.907 kb on + strand at 3776.907 kb on + strand at 3776.907 kb on + strand at 3776.907 kb on + strand at 3776.908 kb on - strand at 3776.908 kb on - strand at 3776.908 kb on - strand at 3776.908 kb on - strand at 3776.908 kb on - strand at 3777.185 kb on + strand, within Psyr_3152 at 3777.186 kb on - strand, within Psyr_3152 at 3777.235 kb on + strand at 3777.236 kb on - strand at 3777.236 kb on - strand at 3777.388 kb on + strand at 3777.389 kb on - strand at 3777.389 kb on - strand at 3777.399 kb on + strand at 3777.399 kb on + strand at 3777.399 kb on + strand at 3777.399 kb on + strand at 3777.399 kb on + strand at 3777.399 kb on + strand at 3777.400 kb on - strand at 3777.412 kb on - strand at 3777.418 kb on - strand at 3777.418 kb on - strand at 3777.543 kb on - strand at 3777.606 kb on - strand at 3777.609 kb on + strand at 3777.610 kb on - strand at 3777.622 kb on - strand at 3777.650 kb on + strand at 3777.676 kb on - strand at 3777.764 kb on + strand at 3777.764 kb on + strand at 3777.765 kb on - strand at 3777.844 kb on + strand at 3777.844 kb on + strand at 3777.844 kb on + strand at 3777.844 kb on + strand at 3777.844 kb on + strand at 3777.845 kb on - strand at 3777.845 kb on - strand at 3777.845 kb on - strand at 3777.845 kb on - strand at 3777.889 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 3,774,592 - Psyr_3150 0.54 +3.3 3,774,646 - Psyr_3150 0.58 +0.4 3,774,718 + Psyr_3150 0.64 +0.3 3,774,718 + Psyr_3150 0.64 -1.4 3,774,719 - Psyr_3150 0.64 +1.3 3,774,761 + Psyr_3150 0.68 +3.1 3,774,761 + Psyr_3150 0.68 +0.8 3,774,761 + Psyr_3150 0.68 +3.1 3,774,761 + Psyr_3150 0.68 -0.2 3,774,761 + Psyr_3150 0.68 -2.4 3,774,761 + Psyr_3150 0.68 +1.3 3,774,761 + Psyr_3150 0.68 +3.6 3,774,761 + Psyr_3150 0.68 -1.6 3,774,761 + Psyr_3150 0.68 -0.6 3,774,761 + Psyr_3150 0.68 +2.1 3,774,761 + Psyr_3150 0.68 -1.0 3,774,761 + Psyr_3150 0.68 +3.8 3,774,761 + Psyr_3150 0.68 -2.2 3,774,761 + Psyr_3150 0.68 +1.3 3,774,761 + Psyr_3150 0.68 -3.3 3,774,761 + Psyr_3150 0.68 +4.6 3,774,761 + Psyr_3150 0.68 -0.2 3,774,761 + Psyr_3150 0.68 -1.6 3,774,761 + Psyr_3150 0.68 -1.2 3,774,761 + Psyr_3150 0.68 +2.3 3,774,761 + Psyr_3150 0.68 -0.9 3,774,761 + Psyr_3150 0.68 +1.0 3,774,761 + Psyr_3150 0.68 -0.6 3,774,761 + Psyr_3150 0.68 +1.3 3,774,761 + Psyr_3150 0.68 -0.2 3,774,761 + Psyr_3150 0.68 +0.2 3,774,761 + Psyr_3150 0.68 -0.2 3,774,762 - Psyr_3150 0.68 +0.8 3,774,762 - Psyr_3150 0.68 -2.0 3,774,762 - Psyr_3150 0.68 +0.8 3,774,762 - Psyr_3150 0.68 -1.8 3,774,762 - Psyr_3150 0.68 -1.5 3,774,762 - Psyr_3150 0.68 +0.5 3,774,762 - Psyr_3150 0.68 +2.1 3,774,762 - Psyr_3150 0.68 +0.2 3,774,762 - Psyr_3150 0.68 +2.6 3,774,762 - Psyr_3150 0.68 -0.2 3,774,762 - Psyr_3150 0.68 -0.8 3,774,762 - Psyr_3150 0.68 +2.9 3,774,762 - Psyr_3150 0.68 -4.9 3,774,762 - Psyr_3150 0.68 -2.1 3,774,762 - Psyr_3150 0.68 +0.9 3,774,762 - Psyr_3150 0.68 -2.7 3,774,762 - Psyr_3150 0.68 +0.5 3,774,762 - Psyr_3150 0.68 -1.4 3,774,762 - Psyr_3150 0.68 -2.1 3,774,762 - Psyr_3150 0.68 -2.7 3,774,762 - Psyr_3150 0.68 +2.3 3,774,762 - Psyr_3150 0.68 +3.9 3,774,762 - Psyr_3150 0.68 +2.9 3,774,762 - Psyr_3150 0.68 +2.3 3,774,762 - Psyr_3150 0.68 -0.2 3,774,762 - Psyr_3150 0.68 -0.9 3,774,762 - Psyr_3150 0.68 +0.8 3,774,762 - Psyr_3150 0.68 +3.2 3,774,762 - Psyr_3150 0.68 +1.3 3,774,762 - Psyr_3150 0.68 +2.1 3,774,762 - Psyr_3150 0.68 -1.7 3,774,763 + Psyr_3150 0.68 -2.6 3,774,763 + Psyr_3150 0.68 +1.8 3,774,763 + Psyr_3150 0.68 -2.6 3,774,763 + Psyr_3150 0.68 -1.0 3,774,763 + Psyr_3150 0.68 -3.8 3,774,763 + Psyr_3150 0.68 -0.2 3,774,763 + -0.2 3,774,763 + Psyr_3150 0.68 -3.1 3,774,763 + Psyr_3150 0.68 +2.3 3,774,763 + Psyr_3150 0.68 +0.5 3,774,763 + Psyr_3150 0.68 +0.3 3,774,764 - Psyr_3150 0.68 +1.8 3,774,764 - Psyr_3150 0.68 -0.9 3,774,764 - Psyr_3150 0.68 -1.1 3,774,764 - Psyr_3150 0.68 +2.3 3,774,764 - Psyr_3150 0.68 +2.1 3,774,764 - Psyr_3150 0.68 -0.3 3,774,764 - Psyr_3150 0.68 +1.8 3,774,764 - Psyr_3150 0.68 +3.0 3,774,765 + Psyr_3150 0.68 +1.3 3,774,765 + Psyr_3150 0.68 +1.3 3,774,765 + Psyr_3150 0.68 +1.8 3,774,765 + Psyr_3150 0.68 +3.6 3,774,765 + Psyr_3150 0.68 -0.2 3,774,765 + Psyr_3150 0.68 +2.8 3,774,765 + Psyr_3150 0.68 +1.8 3,774,766 - Psyr_3150 0.68 -1.8 3,774,766 - Psyr_3150 0.68 -0.9 3,774,766 - Psyr_3150 0.68 +2.9 3,774,766 - Psyr_3150 0.68 +0.0 3,774,766 - Psyr_3150 0.68 +3.3 3,774,766 - Psyr_3150 0.68 -1.7 3,774,766 - Psyr_3150 0.68 +2.3 3,775,344 + Psyr_3151 0.11 -0.9 3,775,345 - Psyr_3151 0.11 -1.2 3,775,388 + Psyr_3151 0.14 -0.1 3,775,538 + Psyr_3151 0.22 +2.1 3,775,539 - Psyr_3151 0.22 -1.1 3,775,573 - Psyr_3151 0.24 -4.0 3,775,847 + Psyr_3151 0.40 -1.3 3,775,847 + Psyr_3151 0.40 -0.8 3,775,848 - Psyr_3151 0.40 +0.8 3,775,848 - Psyr_3151 0.40 +0.8 3,775,848 - Psyr_3151 0.40 +3.5 3,775,848 - Psyr_3151 0.40 +0.2 3,775,848 - Psyr_3151 0.40 +0.4 3,775,849 - Psyr_3151 0.40 +1.0 3,776,266 + Psyr_3151 0.64 -1.3 3,776,412 - Psyr_3151 0.72 +3.5 3,776,484 - Psyr_3151 0.76 +2.3 3,776,722 + Psyr_3151 0.90 -0.2 3,776,734 - +3.5 3,776,904 + -0.6 3,776,904 + +3.5 3,776,904 + -2.1 3,776,904 + +4.1 3,776,904 + -1.0 3,776,904 + -2.1 3,776,904 + +2.6 3,776,904 + -0.4 3,776,904 + -3.6 3,776,904 + +1.3 3,776,904 + -1.2 3,776,905 - +1.6 3,776,905 - +3.6 3,776,905 - -1.5 3,776,905 - +2.1 3,776,905 - +1.3 3,776,905 - -1.0 3,776,905 - +2.9 3,776,905 - +1.3 3,776,905 - -1.7 3,776,905 - -1.5 3,776,905 - -1.2 3,776,905 - -0.8 3,776,905 - +2.1 3,776,905 - -1.2 3,776,905 - +1.3 3,776,907 + +1.8 3,776,907 + -1.0 3,776,907 + +3.2 3,776,907 + +0.5 3,776,907 + +3.3 3,776,907 + -1.1 3,776,908 - -3.3 3,776,908 - +0.4 3,776,908 - +2.1 3,776,908 - -1.9 3,776,908 - -1.7 3,777,185 + Psyr_3152 0.78 +1.3 3,777,186 - Psyr_3152 0.79 +0.8 3,777,235 + -1.4 3,777,236 - +1.1 3,777,236 - -1.3 3,777,388 + -2.2 3,777,389 - -2.2 3,777,389 - -2.0 3,777,399 + -2.5 3,777,399 + -0.6 3,777,399 + +2.9 3,777,399 + +3.1 3,777,399 + +0.8 3,777,399 + +2.3 3,777,400 - +0.3 3,777,412 - -0.1 3,777,418 - +2.3 3,777,418 - +2.4 3,777,543 - +1.3 3,777,606 - +1.3 3,777,609 + -0.1 3,777,610 - -1.3 3,777,622 - +2.6 3,777,650 + +2.3 3,777,676 - -0.2 3,777,764 + -1.1 3,777,764 + +3.1 3,777,765 - -4.5 3,777,844 + -1.0 3,777,844 + +0.7 3,777,844 + -2.5 3,777,844 + -0.5 3,777,844 + +0.6 3,777,845 - -0.2 3,777,845 - +1.8 3,777,845 - -0.4 3,777,845 - -2.6 3,777,889 + -0.2
Or see this region's nucleotide sequence