Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3027

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3025 and Psyr_3026 are separated by 106 nucleotidesPsyr_3026 and Psyr_3027 are separated by 78 nucleotidesPsyr_3027 and Psyr_3028 are separated by 20 nucleotides Psyr_3025: Psyr_3025 - Major facilitator superfamily, at 3,622,736 to 3,623,965 _3025 Psyr_3026: Psyr_3026 - transcriptional regulator, TetR family, at 3,624,072 to 3,624,617 _3026 Psyr_3027: Psyr_3027 - Protein kinase:Leucine-rich repeat protein, at 3,624,696 to 3,626,000 _3027 Psyr_3028: Psyr_3028 - Protein of unknown function DUF28, at 3,626,021 to 3,626,725 _3028 Position (kb) 3624 3625 3626 3627Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3623.772 kb on + strand, within Psyr_3025at 3623.772 kb on + strand, within Psyr_3025at 3623.772 kb on + strand, within Psyr_3025at 3623.772 kb on + strand, within Psyr_3025at 3623.772 kb on + strand, within Psyr_3025at 3623.772 kb on + strand, within Psyr_3025at 3623.772 kb on + strand, within Psyr_3025at 3623.772 kb on + strand, within Psyr_3025at 3623.772 kb on + strand, within Psyr_3025at 3623.772 kb on + strand, within Psyr_3025at 3623.773 kb on - strand, within Psyr_3025at 3623.773 kb on - strand, within Psyr_3025at 3623.774 kb on + strand, within Psyr_3025at 3623.774 kb on + strand, within Psyr_3025at 3623.774 kb on + strand, within Psyr_3025at 3623.774 kb on + strand, within Psyr_3025at 3623.774 kb on + strand, within Psyr_3025at 3623.775 kb on - strand, within Psyr_3025at 3623.775 kb on - strand, within Psyr_3025at 3623.775 kb on - strand, within Psyr_3025at 3623.775 kb on - strand, within Psyr_3025at 3623.775 kb on - strand, within Psyr_3025at 3623.775 kb on - strand, within Psyr_3025at 3623.791 kb on + strand, within Psyr_3025at 3623.873 kb on + strandat 3623.874 kb on - strandat 3624.224 kb on + strand, within Psyr_3026at 3624.224 kb on + strand, within Psyr_3026at 3624.224 kb on + strand, within Psyr_3026at 3624.224 kb on + strand, within Psyr_3026at 3624.225 kb on - strand, within Psyr_3026at 3624.225 kb on - strand, within Psyr_3026at 3624.349 kb on - strand, within Psyr_3026at 3624.691 kb on + strandat 3624.691 kb on + strandat 3624.691 kb on + strandat 3624.691 kb on + strandat 3624.692 kb on - strandat 3624.692 kb on - strandat 3624.692 kb on - strandat 3624.692 kb on - strandat 3624.692 kb on - strandat 3624.692 kb on - strandat 3624.715 kb on + strandat 3624.976 kb on + strand, within Psyr_3027at 3625.398 kb on + strand, within Psyr_3027at 3625.398 kb on + strand, within Psyr_3027at 3625.398 kb on + strand, within Psyr_3027at 3625.399 kb on - strand, within Psyr_3027at 3625.399 kb on - strand, within Psyr_3027at 3625.399 kb on - strand, within Psyr_3027at 3625.399 kb on - strand, within Psyr_3027at 3625.399 kb on - strand, within Psyr_3027at 3625.606 kb on - strand, within Psyr_3027at 3625.714 kb on - strand, within Psyr_3027at 3625.975 kb on + strandat 3625.976 kb on - strandat 3625.976 kb on - strandat 3625.976 kb on - strandat 3626.040 kb on + strandat 3626.040 kb on + strandat 3626.041 kb on - strandat 3626.041 kb on - strandat 3626.478 kb on + strand, within Psyr_3028at 3626.478 kb on + strand, within Psyr_3028at 3626.479 kb on - strand, within Psyr_3028at 3626.479 kb on - strand, within Psyr_3028at 3626.668 kb on + strandat 3626.668 kb on + strandat 3626.668 kb on + strandat 3626.668 kb on + strandat 3626.669 kb on - strandat 3626.669 kb on - strandat 3626.669 kb on - strandat 3626.669 kb on - strandat 3626.669 kb on - strandat 3626.699 kb on - strandat 3626.824 kb on - strandat 3626.824 kb on - strandat 3626.847 kb on + strandat 3626.894 kb on - strandat 3626.959 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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3,623,772 + Psyr_3025 0.84 -0.8
3,623,772 + Psyr_3025 0.84 +3.6
3,623,772 + Psyr_3025 0.84 +0.7
3,623,772 + Psyr_3025 0.84 +2.4
3,623,772 + Psyr_3025 0.84 -2.1
3,623,772 + Psyr_3025 0.84 +0.2
3,623,772 + Psyr_3025 0.84 -0.6
3,623,772 + Psyr_3025 0.84 +0.8
3,623,772 + Psyr_3025 0.84 +0.1
3,623,772 + Psyr_3025 0.84 +3.5
3,623,773 - Psyr_3025 0.84 +1.4
3,623,773 - Psyr_3025 0.84 +3.2
3,623,774 + Psyr_3025 0.84 +3.6
3,623,774 + Psyr_3025 0.84 -0.7
3,623,774 + Psyr_3025 0.84 -0.7
3,623,774 + Psyr_3025 0.84 +3.2
3,623,774 + Psyr_3025 0.84 -0.2
3,623,775 - Psyr_3025 0.84 -0.8
3,623,775 - Psyr_3025 0.84 -0.2
3,623,775 - Psyr_3025 0.84 -3.0
3,623,775 - Psyr_3025 0.84 +1.0
3,623,775 - Psyr_3025 0.84 +2.4
3,623,775 - Psyr_3025 0.84 -0.9
3,623,791 + Psyr_3025 0.86 +3.6
3,623,873 + -0.1
3,623,874 - -1.1
3,624,224 + Psyr_3026 0.28 +3.1
3,624,224 + Psyr_3026 0.28 -0.2
3,624,224 + Psyr_3026 0.28 -2.8
3,624,224 + Psyr_3026 0.28 -0.5
3,624,225 - Psyr_3026 0.28 -1.3
3,624,225 - Psyr_3026 0.28 +0.8
3,624,349 - Psyr_3026 0.51 +2.1
3,624,691 + -1.2
3,624,691 + +1.4
3,624,691 + -0.2
3,624,691 + -2.1
3,624,692 - -1.1
3,624,692 - -0.9
3,624,692 - -2.4
3,624,692 - -3.4
3,624,692 - +0.0
3,624,692 - -2.7
3,624,715 + -1.5
3,624,976 + Psyr_3027 0.21 +0.2
3,625,398 + Psyr_3027 0.54 -2.0
3,625,398 + Psyr_3027 0.54 -1.5
3,625,398 + Psyr_3027 0.54 +0.1
3,625,399 - Psyr_3027 0.54 -0.4
3,625,399 - Psyr_3027 0.54 -0.0
3,625,399 - Psyr_3027 0.54 +1.4
3,625,399 - Psyr_3027 0.54 +2.1
3,625,399 - Psyr_3027 0.54 +1.1
3,625,606 - Psyr_3027 0.70 +0.8
3,625,714 - Psyr_3027 0.78 +3.2
3,625,975 + -0.1
3,625,976 - +3.0
3,625,976 - -1.4
3,625,976 - -0.1
3,626,040 + -0.2
3,626,040 + -2.9
3,626,041 - -1.4
3,626,041 - -2.7
3,626,478 + Psyr_3028 0.65 -1.0
3,626,478 + Psyr_3028 0.65 -0.2
3,626,479 - Psyr_3028 0.65 +3.9
3,626,479 - Psyr_3028 0.65 +2.4
3,626,668 + +0.8
3,626,668 + -0.2
3,626,668 + +2.4
3,626,668 + +3.2
3,626,669 - +2.8
3,626,669 - +3.0
3,626,669 - +1.8
3,626,669 - -1.3
3,626,669 - +2.8
3,626,699 - +2.4
3,626,824 - -1.6
3,626,824 - +0.2
3,626,847 + -1.1
3,626,894 - -1.0
3,626,959 - +3.5

Or see this region's nucleotide sequence