Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2942

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2941 and Psyr_2942 overlap by 4 nucleotidesPsyr_2942 and Psyr_2943 overlap by 4 nucleotidesPsyr_2943 and Psyr_2944 overlap by 20 nucleotides Psyr_2941: Psyr_2941 - amino acid ABC transporter substrate-binding protein, PAAT family, at 3,532,243 to 3,533,115 _2941 Psyr_2942: Psyr_2942 - amino acid ABC transporter ATP-binding protein, PAAT family, at 3,533,112 to 3,533,873 _2942 Psyr_2943: Psyr_2943 - amino acid ABC transporter membrane protein 2, PAAT family, at 3,533,870 to 3,534,529 _2943 Psyr_2944: Psyr_2944 - amino acid ABC transporter membrane protein 1, PAAT family, at 3,534,510 to 3,535,175 _2944 Position (kb) 3533 3534Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3532.142 kb on + strandat 3532.143 kb on - strandat 3532.312 kb on + strandat 3532.312 kb on + strandat 3532.312 kb on + strandat 3532.312 kb on + strandat 3532.312 kb on + strandat 3532.312 kb on + strandat 3532.312 kb on + strandat 3532.313 kb on - strandat 3532.313 kb on - strandat 3532.313 kb on - strandat 3532.313 kb on - strandat 3532.316 kb on + strandat 3532.316 kb on + strandat 3532.316 kb on + strandat 3532.316 kb on + strandat 3532.316 kb on + strandat 3532.316 kb on + strandat 3532.316 kb on + strandat 3532.317 kb on - strandat 3532.317 kb on - strandat 3532.317 kb on - strandat 3532.325 kb on + strandat 3532.326 kb on - strandat 3532.340 kb on + strand, within Psyr_2941at 3532.341 kb on - strand, within Psyr_2941at 3532.341 kb on - strand, within Psyr_2941at 3532.512 kb on - strand, within Psyr_2941at 3532.609 kb on - strand, within Psyr_2941at 3532.784 kb on - strand, within Psyr_2941at 3532.784 kb on - strand, within Psyr_2941at 3532.784 kb on - strand, within Psyr_2941at 3532.784 kb on - strand, within Psyr_2941at 3532.784 kb on - strand, within Psyr_2941at 3532.808 kb on - strand, within Psyr_2941at 3532.908 kb on - strand, within Psyr_2941at 3532.997 kb on + strand, within Psyr_2941at 3533.089 kb on + strandat 3533.093 kb on - strandat 3533.093 kb on - strandat 3533.093 kb on - strandat 3533.147 kb on - strandat 3533.586 kb on + strand, within Psyr_2942at 3533.611 kb on + strand, within Psyr_2942at 3533.611 kb on + strand, within Psyr_2942at 3533.611 kb on + strand, within Psyr_2942at 3533.612 kb on - strand, within Psyr_2942at 3533.612 kb on - strand, within Psyr_2942at 3533.612 kb on - strand, within Psyr_2942at 3533.932 kb on + strandat 3533.958 kb on + strand, within Psyr_2943at 3533.959 kb on - strand, within Psyr_2943at 3533.977 kb on - strand, within Psyr_2943at 3534.067 kb on - strand, within Psyr_2943at 3534.067 kb on - strand, within Psyr_2943at 3534.067 kb on - strand, within Psyr_2943at 3534.067 kb on - strand, within Psyr_2943at 3534.114 kb on - strand, within Psyr_2943at 3534.126 kb on + strand, within Psyr_2943at 3534.126 kb on + strand, within Psyr_2943at 3534.127 kb on - strand, within Psyr_2943at 3534.127 kb on - strand, within Psyr_2943at 3534.127 kb on - strand, within Psyr_2943at 3534.127 kb on - strand, within Psyr_2943at 3534.312 kb on + strand, within Psyr_2943at 3534.312 kb on + strand, within Psyr_2943at 3534.313 kb on - strand, within Psyr_2943at 3534.354 kb on + strand, within Psyr_2943at 3534.424 kb on + strand, within Psyr_2943at 3534.619 kb on + strand, within Psyr_2944at 3534.629 kb on - strand, within Psyr_2944at 3534.631 kb on + strand, within Psyr_2944at 3534.632 kb on - strand, within Psyr_2944at 3534.632 kb on - strand, within Psyr_2944at 3534.643 kb on + strand, within Psyr_2944at 3534.643 kb on + strand, within Psyr_2944at 3534.643 kb on + strand, within Psyr_2944at 3534.643 kb on + strand, within Psyr_2944at 3534.643 kb on + strand, within Psyr_2944at 3534.643 kb on + strand, within Psyr_2944at 3534.643 kb on + strand, within Psyr_2944at 3534.644 kb on - strand, within Psyr_2944at 3534.644 kb on - strand, within Psyr_2944at 3534.644 kb on - strand, within Psyr_2944at 3534.644 kb on - strand, within Psyr_2944at 3534.659 kb on - strand, within Psyr_2944at 3534.843 kb on + strand, within Psyr_2944at 3534.844 kb on - strand, within Psyr_2944at 3534.872 kb on - strand, within Psyr_2944

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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3,532,142 + +1.8
3,532,143 - -0.0
3,532,312 + +0.8
3,532,312 + +1.4
3,532,312 + -0.2
3,532,312 + -2.3
3,532,312 + -0.6
3,532,312 + +3.1
3,532,312 + -2.9
3,532,313 - -2.4
3,532,313 - +0.2
3,532,313 - +3.0
3,532,313 - +3.0
3,532,316 + -1.4
3,532,316 + -3.8
3,532,316 + +1.0
3,532,316 + -0.5
3,532,316 + +0.0
3,532,316 + +0.9
3,532,316 + +2.4
3,532,317 - +0.6
3,532,317 - +0.8
3,532,317 - -1.0
3,532,325 + -1.4
3,532,326 - +0.4
3,532,340 + Psyr_2941 0.11 -1.7
3,532,341 - Psyr_2941 0.11 +2.6
3,532,341 - Psyr_2941 0.11 -1.3
3,532,512 - Psyr_2941 0.31 -0.2
3,532,609 - Psyr_2941 0.42 -1.9
3,532,784 - Psyr_2941 0.62 +3.9
3,532,784 - Psyr_2941 0.62 +1.8
3,532,784 - Psyr_2941 0.62 -1.4
3,532,784 - Psyr_2941 0.62 +3.0
3,532,784 - Psyr_2941 0.62 -2.5
3,532,808 - Psyr_2941 0.65 -1.4
3,532,908 - Psyr_2941 0.76 +2.6
3,532,997 + Psyr_2941 0.86 -0.9
3,533,089 + -1.4
3,533,093 - -4.0
3,533,093 - -0.0
3,533,093 - -1.7
3,533,147 - -2.7
3,533,586 + Psyr_2942 0.62 +3.1
3,533,611 + Psyr_2942 0.65 -1.8
3,533,611 + Psyr_2942 0.65 -0.8
3,533,611 + Psyr_2942 0.65 +1.8
3,533,612 - Psyr_2942 0.66 +3.6
3,533,612 - Psyr_2942 0.66 +4.3
3,533,612 - Psyr_2942 0.66 +2.8
3,533,932 + +3.0
3,533,958 + Psyr_2943 0.13 -3.6
3,533,959 - Psyr_2943 0.13 -2.1
3,533,977 - Psyr_2943 0.16 -1.8
3,534,067 - Psyr_2943 0.30 +1.8
3,534,067 - Psyr_2943 0.30 -2.2
3,534,067 - Psyr_2943 0.30 +0.2
3,534,067 - Psyr_2943 0.30 -2.2
3,534,114 - Psyr_2943 0.37 -2.5
3,534,126 + Psyr_2943 0.39 +0.8
3,534,126 + Psyr_2943 0.39 -3.8
3,534,127 - Psyr_2943 0.39 +3.6
3,534,127 - Psyr_2943 0.39 -2.5
3,534,127 - Psyr_2943 0.39 -2.1
3,534,127 - Psyr_2943 0.39 -0.2
3,534,312 + Psyr_2943 0.67 +1.4
3,534,312 + Psyr_2943 0.67 +1.4
3,534,313 - Psyr_2943 0.67 +2.4
3,534,354 + Psyr_2943 0.73 +1.4
3,534,424 + Psyr_2943 0.84 -1.0
3,534,619 + Psyr_2944 0.16 +3.3
3,534,629 - Psyr_2944 0.18 -2.0
3,534,631 + Psyr_2944 0.18 -0.2
3,534,632 - Psyr_2944 0.18 +0.0
3,534,632 - Psyr_2944 0.18 +2.8
3,534,643 + Psyr_2944 0.20 -2.7
3,534,643 + Psyr_2944 0.20 +0.5
3,534,643 + Psyr_2944 0.20 -1.1
3,534,643 + Psyr_2944 0.20 +2.1
3,534,643 + Psyr_2944 0.20 +1.4
3,534,643 + Psyr_2944 0.20 +1.8
3,534,643 + Psyr_2944 0.20 -1.5
3,534,644 - Psyr_2944 0.20 +2.1
3,534,644 - Psyr_2944 0.20 +2.4
3,534,644 - Psyr_2944 0.20 +1.4
3,534,644 - Psyr_2944 0.20 -0.8
3,534,659 - Psyr_2944 0.22 -1.3
3,534,843 + Psyr_2944 0.50 -0.0
3,534,844 - Psyr_2944 0.50 -0.3
3,534,872 - Psyr_2944 0.54 -0.2

Or see this region's nucleotide sequence