Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2924

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2923 and Psyr_2924 are separated by 109 nucleotidesPsyr_2924 and Psyr_2925 overlap by 8 nucleotidesPsyr_2925 and Psyr_2926 are separated by 76 nucleotides Psyr_2923: Psyr_2923 - Carbohydrate kinase, PfkB, at 3,511,915 to 3,512,841 _2923 Psyr_2924: Psyr_2924 - conserved hypothetical protein, at 3,512,951 to 3,514,246 _2924 Psyr_2925: Psyr_2925 - Helix-turn-helix motif protein, at 3,514,239 to 3,514,583 _2925 Psyr_2926: Psyr_2926 - General substrate transporter:Major facilitator superfamily, at 3,514,660 to 3,515,865 _2926 Position (kb) 3512 3513 3514 3515Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 3512.017 kb on - strand, within Psyr_2923at 3512.239 kb on + strandat 3512.239 kb on + strand, within Psyr_2923at 3512.239 kb on + strand, within Psyr_2923at 3512.239 kb on + strand, within Psyr_2923at 3512.240 kb on - strand, within Psyr_2923at 3512.240 kb on - strand, within Psyr_2923at 3512.240 kb on - strand, within Psyr_2923at 3512.240 kb on - strand, within Psyr_2923at 3512.240 kb on - strand, within Psyr_2923at 3512.240 kb on - strand, within Psyr_2923at 3512.305 kb on + strand, within Psyr_2923at 3512.305 kb on + strand, within Psyr_2923at 3512.305 kb on + strand, within Psyr_2923at 3512.305 kb on + strand, within Psyr_2923at 3512.305 kb on + strand, within Psyr_2923at 3512.305 kb on + strand, within Psyr_2923at 3512.305 kb on + strand, within Psyr_2923at 3512.306 kb on - strand, within Psyr_2923at 3512.306 kb on - strand, within Psyr_2923at 3512.306 kb on - strand, within Psyr_2923at 3512.306 kb on - strand, within Psyr_2923at 3512.309 kb on + strand, within Psyr_2923at 3512.309 kb on + strand, within Psyr_2923at 3512.309 kb on + strand, within Psyr_2923at 3512.309 kb on + strand, within Psyr_2923at 3512.309 kb on + strand, within Psyr_2923at 3512.309 kb on + strand, within Psyr_2923at 3512.310 kb on - strand, within Psyr_2923at 3512.310 kb on - strand, within Psyr_2923at 3512.310 kb on - strand, within Psyr_2923at 3512.310 kb on - strand, within Psyr_2923at 3512.349 kb on + strand, within Psyr_2923at 3512.399 kb on + strand, within Psyr_2923at 3512.431 kb on + strand, within Psyr_2923at 3512.432 kb on - strand, within Psyr_2923at 3512.453 kb on + strand, within Psyr_2923at 3512.471 kb on + strand, within Psyr_2923at 3512.472 kb on - strand, within Psyr_2923at 3512.472 kb on - strand, within Psyr_2923at 3512.472 kb on - strand, within Psyr_2923at 3512.573 kb on + strand, within Psyr_2923at 3512.573 kb on + strand, within Psyr_2923at 3512.574 kb on - strand, within Psyr_2923at 3512.633 kb on + strand, within Psyr_2923at 3512.813 kb on + strandat 3512.813 kb on + strandat 3512.813 kb on + strandat 3512.813 kb on + strandat 3512.813 kb on + strandat 3512.814 kb on - strandat 3512.814 kb on - strandat 3512.814 kb on - strandat 3512.840 kb on - strandat 3512.860 kb on - strandat 3512.876 kb on - strandat 3512.876 kb on - strandat 3512.937 kb on + strandat 3513.044 kb on + strandat 3513.045 kb on - strandat 3513.098 kb on + strand, within Psyr_2924at 3513.098 kb on + strand, within Psyr_2924at 3513.099 kb on - strand, within Psyr_2924at 3513.099 kb on - strand, within Psyr_2924at 3513.249 kb on - strand, within Psyr_2924at 3513.249 kb on - strand, within Psyr_2924at 3513.297 kb on + strand, within Psyr_2924at 3513.297 kb on + strand, within Psyr_2924at 3513.298 kb on - strand, within Psyr_2924at 3513.298 kb on - strand, within Psyr_2924at 3513.380 kb on + strand, within Psyr_2924at 3513.380 kb on + strand, within Psyr_2924at 3513.381 kb on - strand, within Psyr_2924at 3513.381 kb on - strand, within Psyr_2924at 3513.381 kb on - strand, within Psyr_2924at 3513.392 kb on - strand, within Psyr_2924at 3513.392 kb on - strand, within Psyr_2924at 3513.423 kb on + strand, within Psyr_2924at 3513.424 kb on - strand, within Psyr_2924at 3513.424 kb on - strand, within Psyr_2924at 3513.447 kb on + strand, within Psyr_2924at 3513.448 kb on - strand, within Psyr_2924at 3513.448 kb on - strand, within Psyr_2924at 3513.486 kb on - strand, within Psyr_2924at 3513.487 kb on + strand, within Psyr_2924at 3513.487 kb on + strand, within Psyr_2924at 3513.487 kb on + strand, within Psyr_2924at 3513.487 kb on + strand, within Psyr_2924at 3513.487 kb on + strand, within Psyr_2924at 3513.487 kb on + strand, within Psyr_2924at 3513.488 kb on - strand, within Psyr_2924at 3513.488 kb on - strand, within Psyr_2924at 3513.488 kb on - strandat 3513.488 kb on - strand, within Psyr_2924at 3513.488 kb on - strand, within Psyr_2924at 3513.488 kb on - strand, within Psyr_2924at 3513.488 kb on - strand, within Psyr_2924at 3513.492 kb on - strand, within Psyr_2924at 3513.492 kb on - strand, within Psyr_2924at 3513.492 kb on - strand, within Psyr_2924at 3513.492 kb on - strand, within Psyr_2924at 3513.551 kb on + strand, within Psyr_2924at 3513.551 kb on + strand, within Psyr_2924at 3513.551 kb on + strand, within Psyr_2924at 3513.552 kb on - strand, within Psyr_2924at 3513.552 kb on - strand, within Psyr_2924at 3513.552 kb on - strand, within Psyr_2924at 3513.552 kb on - strand, within Psyr_2924at 3513.555 kb on + strand, within Psyr_2924at 3513.556 kb on - strand, within Psyr_2924at 3513.556 kb on - strand, within Psyr_2924at 3513.556 kb on - strand, within Psyr_2924at 3513.556 kb on - strand, within Psyr_2924at 3513.603 kb on + strand, within Psyr_2924at 3513.603 kb on + strand, within Psyr_2924at 3513.603 kb on + strand, within Psyr_2924at 3513.682 kb on + strand, within Psyr_2924at 3513.806 kb on + strand, within Psyr_2924at 3513.807 kb on - strand, within Psyr_2924at 3513.807 kb on - strand, within Psyr_2924at 3513.807 kb on - strand, within Psyr_2924at 3513.807 kb on - strand, within Psyr_2924at 3513.918 kb on + strand, within Psyr_2924at 3513.919 kb on - strand, within Psyr_2924at 3514.021 kb on - strand, within Psyr_2924at 3514.038 kb on + strand, within Psyr_2924at 3514.039 kb on - strand, within Psyr_2924at 3514.039 kb on - strand, within Psyr_2924at 3514.039 kb on - strand, within Psyr_2924at 3514.039 kb on - strand, within Psyr_2924at 3514.039 kb on - strand, within Psyr_2924at 3514.096 kb on - strand, within Psyr_2924at 3514.221 kb on + strandat 3514.232 kb on - strandat 3514.291 kb on + strand, within Psyr_2925at 3514.472 kb on + strand, within Psyr_2925at 3514.473 kb on - strand, within Psyr_2925at 3514.473 kb on - strand, within Psyr_2925at 3514.473 kb on - strand, within Psyr_2925at 3514.473 kb on - strand, within Psyr_2925at 3514.556 kb on + strandat 3514.556 kb on + strandat 3514.557 kb on - strandat 3514.557 kb on - strandat 3514.564 kb on - strandat 3514.564 kb on - strandat 3514.640 kb on + strandat 3514.964 kb on + strand, within Psyr_2926at 3514.964 kb on + strand, within Psyr_2926at 3514.964 kb on + strand, within Psyr_2926at 3514.964 kb on + strand, within Psyr_2926at 3514.964 kb on + strand, within Psyr_2926at 3514.964 kb on + strand, within Psyr_2926at 3514.965 kb on - strand, within Psyr_2926at 3515.171 kb on + strand, within Psyr_2926at 3515.171 kb on + strand, within Psyr_2926at 3515.171 kb on + strand, within Psyr_2926at 3515.171 kb on + strand, within Psyr_2926at 3515.172 kb on - strand, within Psyr_2926at 3515.172 kb on - strand, within Psyr_2926at 3515.177 kb on + strand, within Psyr_2926at 3515.177 kb on + strand, within Psyr_2926at 3515.177 kb on + strand, within Psyr_2926at 3515.177 kb on + strand, within Psyr_2926at 3515.188 kb on - strand, within Psyr_2926

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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3,512,017 - Psyr_2923 0.11 +2.4
3,512,239 + +0.8
3,512,239 + Psyr_2923 0.35 +2.6
3,512,239 + Psyr_2923 0.35 +2.6
3,512,239 + Psyr_2923 0.35 +1.8
3,512,240 - Psyr_2923 0.35 -2.0
3,512,240 - Psyr_2923 0.35 +1.4
3,512,240 - Psyr_2923 0.35 +3.0
3,512,240 - Psyr_2923 0.35 -3.0
3,512,240 - Psyr_2923 0.35 -0.7
3,512,240 - Psyr_2923 0.35 +1.4
3,512,305 + Psyr_2923 0.42 -2.6
3,512,305 + Psyr_2923 0.42 +3.5
3,512,305 + Psyr_2923 0.42 -1.3
3,512,305 + Psyr_2923 0.42 -3.0
3,512,305 + Psyr_2923 0.42 -3.5
3,512,305 + Psyr_2923 0.42 +4.1
3,512,305 + Psyr_2923 0.42 +0.2
3,512,306 - Psyr_2923 0.42 +3.3
3,512,306 - Psyr_2923 0.42 +0.8
3,512,306 - Psyr_2923 0.42 +1.4
3,512,306 - Psyr_2923 0.42 -3.6
3,512,309 + Psyr_2923 0.43 -0.0
3,512,309 + Psyr_2923 0.43 -2.2
3,512,309 + Psyr_2923 0.43 +3.9
3,512,309 + Psyr_2923 0.43 -0.4
3,512,309 + Psyr_2923 0.43 +2.8
3,512,309 + Psyr_2923 0.43 +2.8
3,512,310 - Psyr_2923 0.43 -2.4
3,512,310 - Psyr_2923 0.43 -0.2
3,512,310 - Psyr_2923 0.43 +0.8
3,512,310 - Psyr_2923 0.43 -2.4
3,512,349 + Psyr_2923 0.47 +3.5
3,512,399 + Psyr_2923 0.52 -1.2
3,512,431 + Psyr_2923 0.56 -1.9
3,512,432 - Psyr_2923 0.56 +3.1
3,512,453 + Psyr_2923 0.58 -1.4
3,512,471 + Psyr_2923 0.60 -0.2
3,512,472 - Psyr_2923 0.60 -1.4
3,512,472 - Psyr_2923 0.60 -1.3
3,512,472 - Psyr_2923 0.60 -0.2
3,512,573 + Psyr_2923 0.71 +0.9
3,512,573 + Psyr_2923 0.71 +1.8
3,512,574 - Psyr_2923 0.71 +3.0
3,512,633 + Psyr_2923 0.77 -1.1
3,512,813 + -1.0
3,512,813 + -5.6
3,512,813 + -2.1
3,512,813 + -0.4
3,512,813 + -1.7
3,512,814 - -1.8
3,512,814 - -1.1
3,512,814 - +1.8
3,512,840 - +2.4
3,512,860 - +3.6
3,512,876 - +2.6
3,512,876 - +3.8
3,512,937 + +2.1
3,513,044 + -0.2
3,513,045 - +3.1
3,513,098 + Psyr_2924 0.11 -1.6
3,513,098 + Psyr_2924 0.11 -4.5
3,513,099 - Psyr_2924 0.11 +2.1
3,513,099 - Psyr_2924 0.11 +2.4
3,513,249 - Psyr_2924 0.23 -1.4
3,513,249 - Psyr_2924 0.23 +0.8
3,513,297 + Psyr_2924 0.27 -1.0
3,513,297 + Psyr_2924 0.27 +3.8
3,513,298 - Psyr_2924 0.27 +2.6
3,513,298 - Psyr_2924 0.27 -2.1
3,513,380 + Psyr_2924 0.33 +3.1
3,513,380 + Psyr_2924 0.33 -1.7
3,513,381 - Psyr_2924 0.33 -1.0
3,513,381 - Psyr_2924 0.33 -0.2
3,513,381 - Psyr_2924 0.33 -0.6
3,513,392 - Psyr_2924 0.34 -2.8
3,513,392 - Psyr_2924 0.34 -1.5
3,513,423 + Psyr_2924 0.36 +3.7
3,513,424 - Psyr_2924 0.36 -1.3
3,513,424 - Psyr_2924 0.36 +1.8
3,513,447 + Psyr_2924 0.38 -2.6
3,513,448 - Psyr_2924 0.38 +3.3
3,513,448 - Psyr_2924 0.38 -0.4
3,513,486 - Psyr_2924 0.41 -0.2
3,513,487 + Psyr_2924 0.41 +0.0
3,513,487 + Psyr_2924 0.41 -1.9
3,513,487 + Psyr_2924 0.41 -2.5
3,513,487 + Psyr_2924 0.41 +2.4
3,513,487 + Psyr_2924 0.41 +3.4
3,513,487 + Psyr_2924 0.41 -3.7
3,513,488 - Psyr_2924 0.41 -0.6
3,513,488 - Psyr_2924 0.41 -2.0
3,513,488 - +1.4
3,513,488 - Psyr_2924 0.41 +3.1
3,513,488 - Psyr_2924 0.41 -0.5
3,513,488 - Psyr_2924 0.41 -1.2
3,513,488 - Psyr_2924 0.41 -1.5
3,513,492 - Psyr_2924 0.42 +3.3
3,513,492 - Psyr_2924 0.42 +2.1
3,513,492 - Psyr_2924 0.42 -2.7
3,513,492 - Psyr_2924 0.42 +1.1
3,513,551 + Psyr_2924 0.46 -0.2
3,513,551 + Psyr_2924 0.46 -2.3
3,513,551 + Psyr_2924 0.46 +1.8
3,513,552 - Psyr_2924 0.46 -1.7
3,513,552 - Psyr_2924 0.46 +3.8
3,513,552 - Psyr_2924 0.46 -4.1
3,513,552 - Psyr_2924 0.46 +1.8
3,513,555 + Psyr_2924 0.47 +2.4
3,513,556 - Psyr_2924 0.47 +3.8
3,513,556 - Psyr_2924 0.47 -1.2
3,513,556 - Psyr_2924 0.47 +1.8
3,513,556 - Psyr_2924 0.47 -3.8
3,513,603 + Psyr_2924 0.50 +3.1
3,513,603 + Psyr_2924 0.50 +0.2
3,513,603 + Psyr_2924 0.50 +1.3
3,513,682 + Psyr_2924 0.56 -0.2
3,513,806 + Psyr_2924 0.66 -0.5
3,513,807 - Psyr_2924 0.66 +3.0
3,513,807 - Psyr_2924 0.66 -0.2
3,513,807 - Psyr_2924 0.66 +3.9
3,513,807 - Psyr_2924 0.66 -1.6
3,513,918 + Psyr_2924 0.75 -2.5
3,513,919 - Psyr_2924 0.75 -0.5
3,514,021 - Psyr_2924 0.83 +0.0
3,514,038 + Psyr_2924 0.84 +0.8
3,514,039 - Psyr_2924 0.84 +4.3
3,514,039 - Psyr_2924 0.84 -0.5
3,514,039 - Psyr_2924 0.84 +2.1
3,514,039 - Psyr_2924 0.84 +1.1
3,514,039 - Psyr_2924 0.84 +4.3
3,514,096 - Psyr_2924 0.88 +1.1
3,514,221 + +2.1
3,514,232 - -3.4
3,514,291 + Psyr_2925 0.15 +1.8
3,514,472 + Psyr_2925 0.68 +0.8
3,514,473 - Psyr_2925 0.68 +3.9
3,514,473 - Psyr_2925 0.68 -0.4
3,514,473 - Psyr_2925 0.68 +3.4
3,514,473 - Psyr_2925 0.68 -0.9
3,514,556 + -1.6
3,514,556 + -0.2
3,514,557 - +1.2
3,514,557 - +2.6
3,514,564 - -0.5
3,514,564 - -0.5
3,514,640 + +0.7
3,514,964 + Psyr_2926 0.25 +2.4
3,514,964 + Psyr_2926 0.25 -1.0
3,514,964 + Psyr_2926 0.25 +3.8
3,514,964 + Psyr_2926 0.25 -1.3
3,514,964 + Psyr_2926 0.25 -0.8
3,514,964 + Psyr_2926 0.25 -1.4
3,514,965 - Psyr_2926 0.25 -4.0
3,515,171 + Psyr_2926 0.42 -0.2
3,515,171 + Psyr_2926 0.42 -0.7
3,515,171 + Psyr_2926 0.42 +3.5
3,515,171 + Psyr_2926 0.42 -0.1
3,515,172 - Psyr_2926 0.42 +3.4
3,515,172 - Psyr_2926 0.42 +0.1
3,515,177 + Psyr_2926 0.43 -1.0
3,515,177 + Psyr_2926 0.43 +2.1
3,515,177 + Psyr_2926 0.43 -0.9
3,515,177 + Psyr_2926 0.43 -0.9
3,515,188 - Psyr_2926 0.44 -1.8

Or see this region's nucleotide sequence