Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2905 and Psyr_2906 are separated by 48 nucleotides Psyr_2906 and Psyr_2907 are separated by 123 nucleotides Psyr_2907 and Psyr_2908 are separated by 74 nucleotides
Psyr_2905: Psyr_2905 - ABC transporter, at 3,484,201 to 3,485,778
_2905
Psyr_2906: Psyr_2906 - Pilus retraction protein PilT, at 3,485,827 to 3,486,996
_2906
Psyr_2907: Psyr_2907 - PpiC-type peptidyl-prolyl cis-trans isomerase, at 3,487,120 to 3,487,395
_2907
Psyr_2908: Psyr_2908 - Phosphoglucomutase, alpha-D-glucose phosphate-specific, at 3,487,470 to 3,489,116
_2908
Position (kb) 3485
3486
3487 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 3485.074 kb on + strand, within Psyr_2905 at 3485.074 kb on + strand, within Psyr_2905 at 3485.075 kb on - strand, within Psyr_2905 at 3485.265 kb on + strand, within Psyr_2905 at 3485.366 kb on - strand, within Psyr_2905 at 3485.558 kb on + strand, within Psyr_2905 at 3485.614 kb on + strand, within Psyr_2905 at 3485.614 kb on + strand, within Psyr_2905 at 3485.614 kb on + strand, within Psyr_2905 at 3485.614 kb on + strand, within Psyr_2905 at 3485.614 kb on + strand, within Psyr_2905 at 3485.614 kb on + strand, within Psyr_2905 at 3485.615 kb on - strand, within Psyr_2905 at 3485.615 kb on - strand, within Psyr_2905 at 3485.615 kb on - strand, within Psyr_2905 at 3485.615 kb on - strand, within Psyr_2905 at 3485.615 kb on - strand, within Psyr_2905 at 3486.556 kb on - strand, within Psyr_2906 at 3486.739 kb on - strand, within Psyr_2906 at 3486.745 kb on - strand, within Psyr_2906 at 3486.745 kb on - strand, within Psyr_2906 at 3486.941 kb on + strand at 3486.941 kb on + strand at 3486.941 kb on + strand at 3486.942 kb on - strand at 3486.942 kb on - strand at 3486.942 kb on - strand at 3487.009 kb on - strand at 3487.020 kb on + strand at 3487.020 kb on + strand at 3487.021 kb on - strand at 3487.021 kb on - strand at 3487.021 kb on - strand at 3487.021 kb on - strand at 3487.021 kb on - strand at 3487.230 kb on + strand, within Psyr_2907 at 3487.230 kb on + strand, within Psyr_2907 at 3487.230 kb on + strand, within Psyr_2907 at 3487.230 kb on + strand, within Psyr_2907 at 3487.230 kb on + strand, within Psyr_2907 at 3487.230 kb on + strand, within Psyr_2907 at 3487.559 kb on - strand at 3487.567 kb on + strand at 3487.567 kb on + strand at 3487.567 kb on + strand at 3487.568 kb on - strand at 3487.568 kb on - strand at 3487.568 kb on - strand at 3487.987 kb on + strand, within Psyr_2908 at 3487.987 kb on + strand, within Psyr_2908 at 3487.987 kb on + strand, within Psyr_2908 at 3487.988 kb on - strand, within Psyr_2908 at 3487.988 kb on - strand, within Psyr_2908
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 3,485,074 + Psyr_2905 0.55 -1.9 3,485,074 + Psyr_2905 0.55 -1.3 3,485,075 - Psyr_2905 0.55 -0.4 3,485,265 + Psyr_2905 0.67 +1.4 3,485,366 - Psyr_2905 0.74 -0.0 3,485,558 + Psyr_2905 0.86 -0.1 3,485,614 + Psyr_2905 0.90 +1.4 3,485,614 + Psyr_2905 0.90 +0.4 3,485,614 + Psyr_2905 0.90 +4.1 3,485,614 + Psyr_2905 0.90 +1.4 3,485,614 + Psyr_2905 0.90 -1.1 3,485,614 + Psyr_2905 0.90 +0.8 3,485,615 - Psyr_2905 0.90 +4.5 3,485,615 - Psyr_2905 0.90 -1.2 3,485,615 - Psyr_2905 0.90 -3.2 3,485,615 - Psyr_2905 0.90 -0.2 3,485,615 - Psyr_2905 0.90 +0.8 3,486,556 - Psyr_2906 0.62 -1.0 3,486,739 - Psyr_2906 0.78 -3.5 3,486,745 - Psyr_2906 0.78 -0.8 3,486,745 - Psyr_2906 0.78 -1.4 3,486,941 + +3.0 3,486,941 + -1.1 3,486,941 + -1.9 3,486,942 - +2.4 3,486,942 - -2.4 3,486,942 - +2.1 3,487,009 - +3.4 3,487,020 + +0.1 3,487,020 + +3.0 3,487,021 - +1.8 3,487,021 - +1.8 3,487,021 - -0.5 3,487,021 - +1.8 3,487,021 - -2.2 3,487,230 + Psyr_2907 0.40 +4.1 3,487,230 + Psyr_2907 0.40 +1.2 3,487,230 + Psyr_2907 0.40 +3.4 3,487,230 + Psyr_2907 0.40 +1.0 3,487,230 + Psyr_2907 0.40 +2.6 3,487,230 + Psyr_2907 0.40 -0.2 3,487,559 - +3.6 3,487,567 + -2.1 3,487,567 + +2.6 3,487,567 + +4.4 3,487,568 - +1.4 3,487,568 - +0.8 3,487,568 - +2.6 3,487,987 + Psyr_2908 0.31 -1.0 3,487,987 + Psyr_2908 0.31 -0.4 3,487,987 + Psyr_2908 0.31 -0.5 3,487,988 - Psyr_2908 0.31 +0.8 3,487,988 - Psyr_2908 0.31 -2.5
Or see this region's nucleotide sequence