Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2896

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2894 and Psyr_RNA45 are separated by 91 nucleotidesPsyr_RNA45 and Psyr_2895 are separated by 66 nucleotidesPsyr_2895 and Psyr_2896 are separated by 32 nucleotidesPsyr_2896 and Psyr_2897 are separated by 2 nucleotidesPsyr_2897 and Psyr_2898 are separated by 145 nucleotides Psyr_2894: Psyr_2894 - conserved hypothetical protein, at 3,473,200 to 3,473,658 _2894 Psyr_RNA45: Psyr_RNA45 - tRNA-Gly, at 3,473,750 to 3,473,825 _RNA45 Psyr_2895: Psyr_2895 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 3,473,892 to 3,474,452 _2895 Psyr_2896: Psyr_2896 - Excinuclease ABC subunit C, at 3,474,485 to 3,476,308 _2896 Psyr_2897: Psyr_2897 - regulatory protein, LuxR:Response regulator receiver, at 3,476,311 to 3,476,979 _2897 Psyr_2898: Psyr_2898 - Helix-turn-helix motif protein, at 3,477,125 to 3,477,487 _2898 Position (kb) 3474 3475 3476 3477Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3 4at 3473.545 kb on + strand, within Psyr_2894at 3473.546 kb on - strand, within Psyr_2894at 3473.656 kb on + strandat 3473.656 kb on + strandat 3473.657 kb on - strandat 3473.657 kb on - strandat 3474.508 kb on - strandat 3474.508 kb on - strandat 3474.733 kb on + strand, within Psyr_2896at 3474.793 kb on - strand, within Psyr_2896at 3474.863 kb on + strand, within Psyr_2896at 3474.964 kb on - strand, within Psyr_2896at 3474.964 kb on - strand, within Psyr_2896at 3474.996 kb on + strand, within Psyr_2896at 3475.119 kb on + strand, within Psyr_2896at 3475.405 kb on - strand, within Psyr_2896at 3475.448 kb on + strand, within Psyr_2896at 3475.448 kb on + strand, within Psyr_2896at 3475.449 kb on - strand, within Psyr_2896at 3475.449 kb on - strand, within Psyr_2896at 3475.449 kb on - strand, within Psyr_2896at 3475.736 kb on + strand, within Psyr_2896at 3475.736 kb on + strand, within Psyr_2896at 3475.736 kb on + strand, within Psyr_2896at 3475.736 kb on + strand, within Psyr_2896at 3475.736 kb on + strand, within Psyr_2896at 3475.736 kb on + strand, within Psyr_2896at 3475.736 kb on + strand, within Psyr_2896at 3475.736 kb on + strand, within Psyr_2896at 3475.736 kb on + strand, within Psyr_2896at 3475.737 kb on - strand, within Psyr_2896at 3475.737 kb on - strand, within Psyr_2896at 3475.737 kb on - strand, within Psyr_2896at 3475.737 kb on - strand, within Psyr_2896at 3475.737 kb on - strand, within Psyr_2896at 3475.737 kb on - strand, within Psyr_2896at 3475.749 kb on + strand, within Psyr_2896at 3475.749 kb on + strand, within Psyr_2896at 3475.749 kb on + strand, within Psyr_2896at 3475.749 kb on + strand, within Psyr_2896at 3475.749 kb on + strand, within Psyr_2896at 3475.750 kb on - strand, within Psyr_2896at 3475.750 kb on - strand, within Psyr_2896at 3475.750 kb on - strand, within Psyr_2896at 3475.750 kb on - strand, within Psyr_2896at 3475.750 kb on - strand, within Psyr_2896at 3475.804 kb on - strand, within Psyr_2896at 3475.836 kb on + strand, within Psyr_2896at 3475.836 kb on + strand, within Psyr_2896at 3475.836 kb on + strand, within Psyr_2896at 3475.836 kb on + strand, within Psyr_2896at 3475.836 kb on + strand, within Psyr_2896at 3475.837 kb on - strand, within Psyr_2896at 3475.837 kb on - strand, within Psyr_2896at 3475.837 kb on - strand, within Psyr_2896at 3475.837 kb on - strand, within Psyr_2896at 3475.837 kb on - strand, within Psyr_2896at 3475.927 kb on - strand, within Psyr_2896at 3475.927 kb on - strand, within Psyr_2896at 3475.998 kb on + strand, within Psyr_2896at 3475.998 kb on + strand, within Psyr_2896at 3475.998 kb on + strand, within Psyr_2896at 3475.998 kb on + strand, within Psyr_2896at 3475.999 kb on - strand, within Psyr_2896at 3475.999 kb on - strand, within Psyr_2896at 3476.035 kb on - strand, within Psyr_2896at 3476.172 kb on + strandat 3476.172 kb on + strandat 3476.214 kb on + strandat 3476.242 kb on + strandat 3476.242 kb on + strandat 3476.242 kb on + strandat 3476.242 kb on + strandat 3476.242 kb on + strandat 3476.242 kb on + strandat 3476.242 kb on + strandat 3476.243 kb on - strandat 3476.243 kb on - strandat 3476.243 kb on - strandat 3476.341 kb on + strandat 3476.342 kb on - strandat 3476.342 kb on - strandat 3476.394 kb on + strand, within Psyr_2897at 3476.405 kb on + strand, within Psyr_2897at 3476.405 kb on + strand, within Psyr_2897at 3476.406 kb on - strand, within Psyr_2897at 3476.409 kb on + strand, within Psyr_2897at 3476.409 kb on + strand, within Psyr_2897at 3476.409 kb on + strand, within Psyr_2897at 3476.409 kb on + strand, within Psyr_2897at 3476.409 kb on + strand, within Psyr_2897at 3476.409 kb on + strand, within Psyr_2897at 3476.410 kb on - strand, within Psyr_2897at 3476.410 kb on - strand, within Psyr_2897at 3476.410 kb on - strand, within Psyr_2897at 3476.410 kb on - strand, within Psyr_2897at 3476.410 kb on - strand, within Psyr_2897at 3476.410 kb on - strand, within Psyr_2897at 3476.410 kb on - strand, within Psyr_2897at 3476.410 kb on - strand, within Psyr_2897at 3476.585 kb on + strand, within Psyr_2897at 3476.585 kb on + strand, within Psyr_2897at 3476.586 kb on - strand, within Psyr_2897at 3476.654 kb on + strand, within Psyr_2897at 3476.654 kb on + strand, within Psyr_2897at 3476.655 kb on - strand, within Psyr_2897at 3476.941 kb on + strandat 3476.941 kb on + strandat 3476.941 kb on + strandat 3476.942 kb on - strandat 3476.942 kb on - strandat 3476.942 kb on - strandat 3476.942 kb on - strandat 3476.942 kb on - strandat 3476.942 kb on - strandat 3476.942 kb on - strandat 3476.942 kb on - strandat 3476.949 kb on + strandat 3476.949 kb on + strandat 3476.949 kb on + strandat 3476.950 kb on - strandat 3476.979 kb on + strandat 3477.021 kb on + strandat 3477.021 kb on + strandat 3477.022 kb on - strandat 3477.049 kb on + strandat 3477.050 kb on - strandat 3477.050 kb on - strandat 3477.124 kb on - strandat 3477.124 kb on - strandat 3477.124 kb on - strandat 3477.130 kb on + strandat 3477.234 kb on + strand, within Psyr_2898at 3477.260 kb on - strand, within Psyr_2898

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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3,473,545 + Psyr_2894 0.75 +0.6
3,473,546 - Psyr_2894 0.75 +2.6
3,473,656 + -2.3
3,473,656 + -1.1
3,473,657 - -0.2
3,473,657 - -1.4
3,474,508 - -2.2
3,474,508 - -3.5
3,474,733 + Psyr_2896 0.14 +4.3
3,474,793 - Psyr_2896 0.17 +0.2
3,474,863 + Psyr_2896 0.21 +2.6
3,474,964 - Psyr_2896 0.26 -0.2
3,474,964 - Psyr_2896 0.26 +1.4
3,474,996 + Psyr_2896 0.28 +3.8
3,475,119 + Psyr_2896 0.35 -0.2
3,475,405 - Psyr_2896 0.50 +3.1
3,475,448 + Psyr_2896 0.53 +1.4
3,475,448 + Psyr_2896 0.53 +3.1
3,475,449 - Psyr_2896 0.53 +3.1
3,475,449 - Psyr_2896 0.53 -4.6
3,475,449 - Psyr_2896 0.53 +2.4
3,475,736 + Psyr_2896 0.69 -0.6
3,475,736 + Psyr_2896 0.69 +1.2
3,475,736 + Psyr_2896 0.69 -0.7
3,475,736 + Psyr_2896 0.69 -0.2
3,475,736 + Psyr_2896 0.69 -0.6
3,475,736 + Psyr_2896 0.69 +1.4
3,475,736 + Psyr_2896 0.69 -1.1
3,475,736 + Psyr_2896 0.69 +3.4
3,475,736 + Psyr_2896 0.69 +3.8
3,475,737 - Psyr_2896 0.69 -0.4
3,475,737 - Psyr_2896 0.69 +2.6
3,475,737 - Psyr_2896 0.69 -3.3
3,475,737 - Psyr_2896 0.69 +0.8
3,475,737 - Psyr_2896 0.69 +3.0
3,475,737 - Psyr_2896 0.69 +2.1
3,475,749 + Psyr_2896 0.69 +2.4
3,475,749 + Psyr_2896 0.69 +0.3
3,475,749 + Psyr_2896 0.69 +3.6
3,475,749 + Psyr_2896 0.69 +3.5
3,475,749 + Psyr_2896 0.69 -4.3
3,475,750 - Psyr_2896 0.69 +1.4
3,475,750 - Psyr_2896 0.69 -3.0
3,475,750 - Psyr_2896 0.69 -2.8
3,475,750 - Psyr_2896 0.69 +0.8
3,475,750 - Psyr_2896 0.69 -0.4
3,475,804 - Psyr_2896 0.72 -1.7
3,475,836 + Psyr_2896 0.74 +0.6
3,475,836 + Psyr_2896 0.74 +3.3
3,475,836 + Psyr_2896 0.74 +0.1
3,475,836 + Psyr_2896 0.74 -1.2
3,475,836 + Psyr_2896 0.74 +4.6
3,475,837 - Psyr_2896 0.74 -0.5
3,475,837 - Psyr_2896 0.74 -2.1
3,475,837 - Psyr_2896 0.74 -1.9
3,475,837 - Psyr_2896 0.74 +3.7
3,475,837 - Psyr_2896 0.74 +2.1
3,475,927 - Psyr_2896 0.79 +0.6
3,475,927 - Psyr_2896 0.79 -1.5
3,475,998 + Psyr_2896 0.83 +0.4
3,475,998 + Psyr_2896 0.83 +4.2
3,475,998 + Psyr_2896 0.83 -0.4
3,475,998 + Psyr_2896 0.83 +4.3
3,475,999 - Psyr_2896 0.83 -0.8
3,475,999 - Psyr_2896 0.83 -1.3
3,476,035 - Psyr_2896 0.85 +3.1
3,476,172 + +0.2
3,476,172 + +2.4
3,476,214 + +0.5
3,476,242 + +0.1
3,476,242 + -2.3
3,476,242 + -0.7
3,476,242 + -0.8
3,476,242 + -2.8
3,476,242 + +3.3
3,476,242 + +4.3
3,476,243 - -2.7
3,476,243 - -1.6
3,476,243 - -0.7
3,476,341 + -3.6
3,476,342 - -5.4
3,476,342 - -4.2
3,476,394 + Psyr_2897 0.12 -2.0
3,476,405 + Psyr_2897 0.14 -4.9
3,476,405 + Psyr_2897 0.14 -1.2
3,476,406 - Psyr_2897 0.14 -5.3
3,476,409 + Psyr_2897 0.15 -0.2
3,476,409 + Psyr_2897 0.15 -1.1
3,476,409 + Psyr_2897 0.15 -2.8
3,476,409 + Psyr_2897 0.15 -1.8
3,476,409 + Psyr_2897 0.15 -0.9
3,476,409 + Psyr_2897 0.15 -3.9
3,476,410 - Psyr_2897 0.15 -4.1
3,476,410 - Psyr_2897 0.15 -6.4
3,476,410 - Psyr_2897 0.15 -5.0
3,476,410 - Psyr_2897 0.15 -4.4
3,476,410 - Psyr_2897 0.15 -4.2
3,476,410 - Psyr_2897 0.15 -0.2
3,476,410 - Psyr_2897 0.15 +0.8
3,476,410 - Psyr_2897 0.15 -2.6
3,476,585 + Psyr_2897 0.41 -2.9
3,476,585 + Psyr_2897 0.41 -3.1
3,476,586 - Psyr_2897 0.41 -3.6
3,476,654 + Psyr_2897 0.51 -4.3
3,476,654 + Psyr_2897 0.51 -0.2
3,476,655 - Psyr_2897 0.51 -2.1
3,476,941 + -3.3
3,476,941 + -4.0
3,476,941 + +1.4
3,476,942 - -0.2
3,476,942 - -2.7
3,476,942 - +2.4
3,476,942 - -4.1
3,476,942 - +0.8
3,476,942 - -5.1
3,476,942 - -2.8
3,476,942 - -4.4
3,476,949 + -4.4
3,476,949 + -5.1
3,476,949 + +1.4
3,476,950 - -3.1
3,476,979 + -0.2
3,477,021 + -2.4
3,477,021 + -3.6
3,477,022 - +2.8
3,477,049 + -3.2
3,477,050 - +0.3
3,477,050 - +3.1
3,477,124 - +0.8
3,477,124 - +1.4
3,477,124 - -0.2
3,477,130 + -0.2
3,477,234 + Psyr_2898 0.30 +4.1
3,477,260 - Psyr_2898 0.37 -0.4

Or see this region's nucleotide sequence