Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2868

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2867 and Psyr_2868 overlap by 4 nucleotidesPsyr_2868 and Psyr_2869 are separated by 131 nucleotides Psyr_2867: Psyr_2867 - ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal, at 3,441,397 to 3,442,788 _2867 Psyr_2868: Psyr_2868 - Response regulator receiver:Transcriptional regulatory protein, C-terminal, at 3,442,785 to 3,443,468 _2868 Psyr_2869: Psyr_2869 - xenobiotic compound monooxygenase, DszA family, at 3,443,600 to 3,445,000 _2869 Position (kb) 3442 3443 3444Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3441.877 kb on + strand, within Psyr_2867at 3442.279 kb on + strand, within Psyr_2867at 3442.279 kb on + strand, within Psyr_2867at 3442.280 kb on - strand, within Psyr_2867at 3442.280 kb on - strand, within Psyr_2867at 3442.280 kb on - strand, within Psyr_2867at 3442.860 kb on + strand, within Psyr_2868at 3442.860 kb on + strand, within Psyr_2868at 3443.094 kb on + strand, within Psyr_2868at 3443.094 kb on + strand, within Psyr_2868at 3443.094 kb on + strand, within Psyr_2868at 3443.094 kb on + strand, within Psyr_2868at 3443.095 kb on - strand, within Psyr_2868at 3443.095 kb on - strand, within Psyr_2868at 3443.095 kb on - strand, within Psyr_2868at 3443.095 kb on - strand, within Psyr_2868at 3443.095 kb on - strand, within Psyr_2868at 3443.452 kb on - strandat 3443.496 kb on + strandat 3443.496 kb on + strandat 3443.501 kb on - strandat 3443.501 kb on - strandat 3443.564 kb on - strandat 3443.736 kb on + strandat 3443.737 kb on - strandat 3443.808 kb on + strand, within Psyr_2869at 3444.087 kb on + strand, within Psyr_2869at 3444.087 kb on + strand, within Psyr_2869at 3444.088 kb on - strand, within Psyr_2869at 3444.088 kb on - strand, within Psyr_2869at 3444.105 kb on + strand, within Psyr_2869at 3444.105 kb on + strand, within Psyr_2869at 3444.434 kb on + strand, within Psyr_2869at 3444.434 kb on + strand, within Psyr_2869at 3444.435 kb on - strand, within Psyr_2869

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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3,441,877 + Psyr_2867 0.34 -1.9
3,442,279 + Psyr_2867 0.63 -1.4
3,442,279 + Psyr_2867 0.63 +1.8
3,442,280 - Psyr_2867 0.63 +2.4
3,442,280 - Psyr_2867 0.63 +3.9
3,442,280 - Psyr_2867 0.63 +3.0
3,442,860 + Psyr_2868 0.11 -3.5
3,442,860 + Psyr_2868 0.11 +0.8
3,443,094 + Psyr_2868 0.45 +3.8
3,443,094 + Psyr_2868 0.45 +3.2
3,443,094 + Psyr_2868 0.45 -1.0
3,443,094 + Psyr_2868 0.45 -1.3
3,443,095 - Psyr_2868 0.45 -2.8
3,443,095 - Psyr_2868 0.45 +1.8
3,443,095 - Psyr_2868 0.45 -0.6
3,443,095 - Psyr_2868 0.45 -2.2
3,443,095 - Psyr_2868 0.45 -2.2
3,443,452 - -0.2
3,443,496 + -1.1
3,443,496 + +2.4
3,443,501 - -0.2
3,443,501 - -0.5
3,443,564 - +2.6
3,443,736 + +0.3
3,443,737 - -3.2
3,443,808 + Psyr_2869 0.15 -1.2
3,444,087 + Psyr_2869 0.35 +1.8
3,444,087 + Psyr_2869 0.35 -2.6
3,444,088 - Psyr_2869 0.35 +2.4
3,444,088 - Psyr_2869 0.35 +0.8
3,444,105 + Psyr_2869 0.36 -0.3
3,444,105 + Psyr_2869 0.36 +2.2
3,444,434 + Psyr_2869 0.60 -2.3
3,444,434 + Psyr_2869 0.60 +3.4
3,444,435 - Psyr_2869 0.60 +2.7

Or see this region's nucleotide sequence