Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2678

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2677 and Psyr_2678 overlap by 4 nucleotidesPsyr_2678 and Psyr_2679 are separated by 28 nucleotidesPsyr_2679 and Psyr_2680 overlap by 1 nucleotides Psyr_2677: Psyr_2677 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal, at 3,248,366 to 3,249,499 _2677 Psyr_2678: Psyr_2678 - extracellular solute-binding protein, family 5, at 3,249,496 to 3,250,998 _2678 Psyr_2679: Psyr_2679 - Binding-protein-dependent transport systems inner membrane component, at 3,251,027 to 3,251,971 _2679 Psyr_2680: Psyr_2680 - Binding-protein-dependent transport systems inner membrane component, at 3,251,971 to 3,252,843 _2680 Position (kb) 3249 3250 3251Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3248.560 kb on - strand, within Psyr_2677at 3248.639 kb on + strand, within Psyr_2677at 3248.639 kb on + strand, within Psyr_2677at 3248.640 kb on - strand, within Psyr_2677at 3248.640 kb on - strand, within Psyr_2677at 3248.640 kb on - strand, within Psyr_2677at 3248.640 kb on - strand, within Psyr_2677at 3248.689 kb on - strand, within Psyr_2677at 3248.781 kb on + strand, within Psyr_2677at 3248.781 kb on + strand, within Psyr_2677at 3248.782 kb on - strand, within Psyr_2677at 3248.785 kb on + strand, within Psyr_2677at 3248.785 kb on + strand, within Psyr_2677at 3248.785 kb on + strand, within Psyr_2677at 3248.785 kb on + strand, within Psyr_2677at 3248.786 kb on - strand, within Psyr_2677at 3248.786 kb on - strand, within Psyr_2677at 3248.786 kb on - strand, within Psyr_2677at 3248.786 kb on - strand, within Psyr_2677at 3248.829 kb on + strand, within Psyr_2677at 3248.841 kb on + strand, within Psyr_2677at 3248.841 kb on + strand, within Psyr_2677at 3249.104 kb on + strand, within Psyr_2677at 3249.104 kb on + strand, within Psyr_2677at 3249.104 kb on + strand, within Psyr_2677at 3249.104 kb on + strand, within Psyr_2677at 3249.105 kb on - strand, within Psyr_2677at 3249.105 kb on - strand, within Psyr_2677at 3249.105 kb on - strand, within Psyr_2677at 3249.105 kb on - strand, within Psyr_2677at 3249.105 kb on - strand, within Psyr_2677at 3249.170 kb on - strand, within Psyr_2677at 3249.170 kb on - strand, within Psyr_2677at 3249.438 kb on - strandat 3249.438 kb on - strandat 3249.438 kb on - strandat 3249.625 kb on + strandat 3249.626 kb on - strandat 3249.643 kb on + strandat 3249.644 kb on - strandat 3249.691 kb on + strand, within Psyr_2678at 3249.736 kb on - strand, within Psyr_2678at 3249.772 kb on + strand, within Psyr_2678at 3249.773 kb on - strand, within Psyr_2678at 3249.773 kb on - strand, within Psyr_2678at 3250.031 kb on - strand, within Psyr_2678at 3250.031 kb on - strand, within Psyr_2678at 3250.087 kb on + strand, within Psyr_2678at 3250.088 kb on - strand, within Psyr_2678at 3250.088 kb on - strandat 3250.088 kb on - strand, within Psyr_2678at 3250.088 kb on - strand, within Psyr_2678at 3250.249 kb on + strand, within Psyr_2678at 3250.249 kb on + strand, within Psyr_2678at 3250.249 kb on + strand, within Psyr_2678at 3250.249 kb on + strand, within Psyr_2678at 3250.249 kb on + strand, within Psyr_2678at 3250.249 kb on + strand, within Psyr_2678at 3250.250 kb on - strand, within Psyr_2678at 3250.250 kb on - strand, within Psyr_2678at 3250.250 kb on - strand, within Psyr_2678at 3250.250 kb on - strand, within Psyr_2678at 3250.271 kb on - strand, within Psyr_2678at 3250.381 kb on - strand, within Psyr_2678at 3250.405 kb on + strand, within Psyr_2678at 3250.447 kb on + strand, within Psyr_2678at 3250.448 kb on - strand, within Psyr_2678at 3250.771 kb on + strand, within Psyr_2678at 3250.771 kb on + strand, within Psyr_2678at 3250.772 kb on - strand, within Psyr_2678at 3250.846 kb on + strand, within Psyr_2678at 3250.846 kb on + strand, within Psyr_2678at 3250.846 kb on + strand, within Psyr_2678at 3250.847 kb on - strand, within Psyr_2678at 3250.892 kb on - strandat 3250.898 kb on - strandat 3250.898 kb on - strandat 3250.926 kb on + strandat 3251.220 kb on - strand, within Psyr_2679at 3251.646 kb on + strand, within Psyr_2679at 3251.699 kb on - strand, within Psyr_2679at 3251.805 kb on + strand, within Psyr_2679at 3251.805 kb on + strand, within Psyr_2679at 3251.806 kb on - strand, within Psyr_2679at 3251.861 kb on + strand, within Psyr_2679

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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3,248,560 - Psyr_2677 0.17 +2.5
3,248,639 + Psyr_2677 0.24 +3.5
3,248,639 + Psyr_2677 0.24 -3.2
3,248,640 - Psyr_2677 0.24 +3.0
3,248,640 - Psyr_2677 0.24 -0.0
3,248,640 - Psyr_2677 0.24 +2.5
3,248,640 - Psyr_2677 0.24 -4.4
3,248,689 - Psyr_2677 0.28 +4.0
3,248,781 + Psyr_2677 0.37 +0.4
3,248,781 + Psyr_2677 0.37 +2.7
3,248,782 - Psyr_2677 0.37 -1.9
3,248,785 + Psyr_2677 0.37 -0.1
3,248,785 + Psyr_2677 0.37 +2.5
3,248,785 + Psyr_2677 0.37 +3.7
3,248,785 + Psyr_2677 0.37 -1.9
3,248,786 - Psyr_2677 0.37 +0.0
3,248,786 - Psyr_2677 0.37 -0.3
3,248,786 - Psyr_2677 0.37 +2.2
3,248,786 - Psyr_2677 0.37 -2.1
3,248,829 + Psyr_2677 0.41 +3.3
3,248,841 + Psyr_2677 0.42 +2.7
3,248,841 + Psyr_2677 0.42 -1.5
3,249,104 + Psyr_2677 0.65 -0.5
3,249,104 + Psyr_2677 0.65 +1.5
3,249,104 + Psyr_2677 0.65 +3.2
3,249,104 + Psyr_2677 0.65 -2.3
3,249,105 - Psyr_2677 0.65 -1.9
3,249,105 - Psyr_2677 0.65 -0.5
3,249,105 - Psyr_2677 0.65 -2.5
3,249,105 - Psyr_2677 0.65 +0.4
3,249,105 - Psyr_2677 0.65 -1.2
3,249,170 - Psyr_2677 0.71 +1.9
3,249,170 - Psyr_2677 0.71 -0.7
3,249,438 - -1.5
3,249,438 - -1.4
3,249,438 - +1.9
3,249,625 + +3.2
3,249,626 - +1.5
3,249,643 + +1.5
3,249,644 - +3.6
3,249,691 + Psyr_2678 0.13 -3.6
3,249,736 - Psyr_2678 0.16 -0.8
3,249,772 + Psyr_2678 0.18 -2.3
3,249,773 - Psyr_2678 0.18 -2.7
3,249,773 - Psyr_2678 0.18 -3.5
3,250,031 - Psyr_2678 0.36 +0.8
3,250,031 - Psyr_2678 0.36 +2.5
3,250,087 + Psyr_2678 0.39 +4.7
3,250,088 - Psyr_2678 0.39 -2.6
3,250,088 - +1.5
3,250,088 - Psyr_2678 0.39 -0.1
3,250,088 - Psyr_2678 0.39 +2.7
3,250,249 + Psyr_2678 0.50 +0.1
3,250,249 + Psyr_2678 0.50 -0.1
3,250,249 + Psyr_2678 0.50 -1.8
3,250,249 + Psyr_2678 0.50 +1.5
3,250,249 + Psyr_2678 0.50 +0.0
3,250,249 + Psyr_2678 0.50 +2.9
3,250,250 - Psyr_2678 0.50 -2.6
3,250,250 - Psyr_2678 0.50 -1.0
3,250,250 - Psyr_2678 0.50 +2.9
3,250,250 - Psyr_2678 0.50 +2.5
3,250,271 - Psyr_2678 0.52 +0.5
3,250,381 - Psyr_2678 0.59 +1.5
3,250,405 + Psyr_2678 0.60 +2.5
3,250,447 + Psyr_2678 0.63 +3.0
3,250,448 - Psyr_2678 0.63 -0.1
3,250,771 + Psyr_2678 0.85 +2.2
3,250,771 + Psyr_2678 0.85 -1.1
3,250,772 - Psyr_2678 0.85 -4.3
3,250,846 + Psyr_2678 0.90 -2.6
3,250,846 + Psyr_2678 0.90 -0.1
3,250,846 + Psyr_2678 0.90 +0.9
3,250,847 - Psyr_2678 0.90 -0.7
3,250,892 - +0.6
3,250,898 - -0.8
3,250,898 - -0.4
3,250,926 + +3.6
3,251,220 - Psyr_2679 0.20 +2.4
3,251,646 + Psyr_2679 0.66 +2.9
3,251,699 - Psyr_2679 0.71 +0.3
3,251,805 + Psyr_2679 0.82 +2.9
3,251,805 + Psyr_2679 0.82 +2.4
3,251,806 - Psyr_2679 0.82 +3.3
3,251,861 + Psyr_2679 0.88 +0.3

Or see this region's nucleotide sequence