Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2634 and Psyr_2635 are separated by 243 nucleotides Psyr_2635 and Psyr_2636 are separated by 96 nucleotides Psyr_2636 and Psyr_2637 are separated by 368 nucleotides
Psyr_2634: Psyr_2634 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 3,199,820 to 3,201,448
_2634
Psyr_2635: Psyr_2635 - conserved hypothetical protein, at 3,201,692 to 3,202,870
_2635
Psyr_2636: Psyr_2636 - TspO/MBR-related protein, at 3,202,967 to 3,203,407
_2636
Psyr_2637: Psyr_2637 - FAD dependent oxidoreductase, at 3,203,776 to 3,205,101
_2637
Position (kb) 3201
3202
3203 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 3200.695 kb on + strand, within Psyr_2634 at 3200.766 kb on + strand, within Psyr_2634 at 3200.785 kb on + strand, within Psyr_2634 at 3200.786 kb on - strand, within Psyr_2634 at 3200.863 kb on - strand, within Psyr_2634 at 3201.459 kb on + strand at 3201.459 kb on + strand at 3201.460 kb on - strand at 3201.460 kb on - strand at 3201.460 kb on - strand at 3201.460 kb on - strand at 3201.460 kb on - strand at 3201.465 kb on + strand at 3201.466 kb on - strand at 3201.505 kb on - strand at 3201.654 kb on + strand at 3201.654 kb on + strand at 3201.655 kb on - strand at 3201.655 kb on - strand at 3201.800 kb on + strand at 3201.925 kb on + strand, within Psyr_2635 at 3201.926 kb on - strand, within Psyr_2635 at 3202.189 kb on + strand, within Psyr_2635 at 3202.190 kb on - strand, within Psyr_2635 at 3202.477 kb on + strand, within Psyr_2635 at 3202.477 kb on + strand, within Psyr_2635 at 3202.599 kb on + strand, within Psyr_2635 at 3202.600 kb on - strand, within Psyr_2635 at 3202.676 kb on + strand, within Psyr_2635 at 3202.676 kb on + strand, within Psyr_2635 at 3202.676 kb on + strand, within Psyr_2635 at 3202.676 kb on + strand, within Psyr_2635 at 3202.677 kb on - strand, within Psyr_2635 at 3202.677 kb on - strand, within Psyr_2635 at 3202.677 kb on - strand, within Psyr_2635 at 3202.677 kb on - strand, within Psyr_2635 at 3202.677 kb on - strand, within Psyr_2635 at 3202.677 kb on - strand, within Psyr_2635 at 3202.794 kb on + strand at 3202.928 kb on + strand at 3202.929 kb on - strand at 3202.929 kb on - strand at 3202.964 kb on + strand at 3202.964 kb on + strand at 3202.965 kb on - strand at 3203.075 kb on + strand, within Psyr_2636 at 3203.170 kb on + strand, within Psyr_2636 at 3203.170 kb on + strand, within Psyr_2636 at 3203.171 kb on - strand, within Psyr_2636 at 3203.171 kb on - strand, within Psyr_2636 at 3203.171 kb on - strand, within Psyr_2636 at 3203.171 kb on - strand, within Psyr_2636 at 3203.385 kb on - strand at 3203.430 kb on + strand at 3203.431 kb on - strand at 3203.431 kb on - strand at 3203.431 kb on - strand at 3203.605 kb on - strand at 3203.611 kb on + strand at 3203.611 kb on + strand at 3203.612 kb on - strand at 3203.612 kb on - strand at 3203.623 kb on + strand at 3203.653 kb on + strand at 3203.654 kb on - strand at 3203.654 kb on - strand at 3203.654 kb on - strand at 3203.657 kb on - strand at 3203.734 kb on - strand at 3203.802 kb on + strand at 3203.802 kb on + strand at 3203.802 kb on + strand at 3203.802 kb on + strand at 3203.803 kb on - strand at 3203.803 kb on - strand at 3203.803 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 3,200,695 + Psyr_2634 0.54 -2.7 3,200,766 + Psyr_2634 0.58 +3.9 3,200,785 + Psyr_2634 0.59 -2.1 3,200,786 - Psyr_2634 0.59 -1.0 3,200,863 - Psyr_2634 0.64 +2.2 3,201,459 + +2.5 3,201,459 + +2.5 3,201,460 - +1.9 3,201,460 - -4.6 3,201,460 - -2.4 3,201,460 - +1.5 3,201,460 - -1.1 3,201,465 + +4.3 3,201,466 - +1.5 3,201,505 - +2.5 3,201,654 + +2.2 3,201,654 + -0.6 3,201,655 - +3.2 3,201,655 - +2.5 3,201,800 + +1.5 3,201,925 + Psyr_2635 0.20 +0.9 3,201,926 - Psyr_2635 0.20 -2.1 3,202,189 + Psyr_2635 0.42 -1.5 3,202,190 - Psyr_2635 0.42 +1.9 3,202,477 + Psyr_2635 0.67 -1.1 3,202,477 + Psyr_2635 0.67 +0.9 3,202,599 + Psyr_2635 0.77 +2.9 3,202,600 - Psyr_2635 0.77 -4.3 3,202,676 + Psyr_2635 0.83 -1.1 3,202,676 + Psyr_2635 0.83 -1.0 3,202,676 + Psyr_2635 0.83 -1.3 3,202,676 + Psyr_2635 0.83 -0.1 3,202,677 - Psyr_2635 0.84 -1.7 3,202,677 - Psyr_2635 0.84 -0.1 3,202,677 - Psyr_2635 0.84 -3.4 3,202,677 - Psyr_2635 0.84 -1.7 3,202,677 - Psyr_2635 0.84 +1.5 3,202,677 - Psyr_2635 0.84 +4.5 3,202,794 + +0.3 3,202,928 + +2.9 3,202,929 - -0.7 3,202,929 - -0.1 3,202,964 + -2.4 3,202,964 + +3.5 3,202,965 - +3.6 3,203,075 + Psyr_2636 0.24 +0.9 3,203,170 + Psyr_2636 0.46 +2.2 3,203,170 + Psyr_2636 0.46 -1.0 3,203,171 - Psyr_2636 0.46 +3.0 3,203,171 - Psyr_2636 0.46 +3.0 3,203,171 - Psyr_2636 0.46 +0.4 3,203,171 - Psyr_2636 0.46 +1.9 3,203,385 - +1.5 3,203,430 + -2.3 3,203,431 - -1.8 3,203,431 - -1.3 3,203,431 - +0.9 3,203,605 - +2.2 3,203,611 + +1.2 3,203,611 + +3.6 3,203,612 - -2.6 3,203,612 - -1.6 3,203,623 + -0.7 3,203,653 + +3.2 3,203,654 - +0.5 3,203,654 - -1.0 3,203,654 - +2.7 3,203,657 - -1.8 3,203,734 - -1.6 3,203,802 + +2.7 3,203,802 + +3.9 3,203,802 + +3.7 3,203,802 + -0.9 3,203,803 - +3.2 3,203,803 - +1.9 3,203,803 - -1.4
Or see this region's nucleotide sequence