Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2627 and Psyr_2628 overlap by 17 nucleotides Psyr_2628 and Psyr_2629 are separated by 1 nucleotides
Psyr_2627: Psyr_2627 - Protein of unknown function DUF214, at 3,187,123 to 3,188,346
_2627
Psyr_2628: Psyr_2628 - ABC transporter, at 3,188,330 to 3,189,022
_2628
Psyr_2629: Psyr_2629 - von Willebrand factor, type A, at 3,189,024 to 3,191,015
_2629
Position (kb) 3188
3189
3190 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 3187.465 kb on + strand, within Psyr_2627 at 3187.465 kb on + strand, within Psyr_2627 at 3187.466 kb on - strand, within Psyr_2627 at 3187.466 kb on - strand, within Psyr_2627 at 3187.467 kb on + strand, within Psyr_2627 at 3187.468 kb on - strand, within Psyr_2627 at 3187.468 kb on - strand, within Psyr_2627 at 3187.546 kb on + strand, within Psyr_2627 at 3187.546 kb on + strand, within Psyr_2627 at 3187.547 kb on - strand, within Psyr_2627 at 3187.547 kb on - strand, within Psyr_2627 at 3187.584 kb on + strand, within Psyr_2627 at 3187.584 kb on + strand, within Psyr_2627 at 3187.671 kb on + strand, within Psyr_2627 at 3187.671 kb on + strand, within Psyr_2627 at 3187.750 kb on + strand, within Psyr_2627 at 3188.123 kb on + strand, within Psyr_2627 at 3188.123 kb on + strand, within Psyr_2627 at 3188.123 kb on + strand, within Psyr_2627 at 3188.428 kb on + strand, within Psyr_2628 at 3188.429 kb on - strand, within Psyr_2628 at 3188.491 kb on + strand, within Psyr_2628 at 3188.513 kb on - strand, within Psyr_2628 at 3188.513 kb on - strand, within Psyr_2628 at 3188.771 kb on + strand, within Psyr_2628 at 3188.771 kb on + strand, within Psyr_2628 at 3188.771 kb on + strand, within Psyr_2628 at 3188.771 kb on + strand, within Psyr_2628 at 3188.772 kb on - strand, within Psyr_2628 at 3188.772 kb on - strand, within Psyr_2628 at 3188.772 kb on - strand, within Psyr_2628 at 3189.115 kb on + strand at 3189.115 kb on + strand at 3189.115 kb on + strand at 3189.115 kb on + strand at 3189.115 kb on + strand at 3189.115 kb on + strand at 3189.115 kb on + strand at 3189.116 kb on - strand at 3189.116 kb on - strand at 3189.116 kb on - strand at 3189.116 kb on - strand at 3189.116 kb on - strand at 3189.116 kb on - strand at 3189.116 kb on - strand at 3189.227 kb on - strand, within Psyr_2629 at 3189.244 kb on + strand, within Psyr_2629 at 3189.653 kb on - strand, within Psyr_2629 at 3189.743 kb on - strand, within Psyr_2629 at 3189.743 kb on - strand, within Psyr_2629 at 3189.766 kb on + strand, within Psyr_2629 at 3189.766 kb on + strand, within Psyr_2629 at 3189.766 kb on + strand, within Psyr_2629 at 3189.766 kb on + strand, within Psyr_2629 at 3189.845 kb on - strand, within Psyr_2629 at 3189.845 kb on - strand, within Psyr_2629 at 3189.879 kb on + strand, within Psyr_2629 at 3189.958 kb on + strand, within Psyr_2629 at 3189.959 kb on - strand, within Psyr_2629 at 3190.016 kb on - strand, within Psyr_2629
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 3,187,465 + Psyr_2627 0.28 +3.8 3,187,465 + Psyr_2627 0.28 -2.9 3,187,466 - Psyr_2627 0.28 +1.1 3,187,466 - Psyr_2627 0.28 +2.7 3,187,467 + Psyr_2627 0.28 -1.4 3,187,468 - Psyr_2627 0.28 +2.9 3,187,468 - Psyr_2627 0.28 +3.1 3,187,546 + Psyr_2627 0.35 +0.9 3,187,546 + Psyr_2627 0.35 +2.7 3,187,547 - Psyr_2627 0.35 -0.2 3,187,547 - Psyr_2627 0.35 +1.5 3,187,584 + Psyr_2627 0.38 -0.8 3,187,584 + Psyr_2627 0.38 +2.2 3,187,671 + Psyr_2627 0.45 +1.5 3,187,671 + Psyr_2627 0.45 -0.4 3,187,750 + Psyr_2627 0.51 -0.9 3,188,123 + Psyr_2627 0.82 -2.8 3,188,123 + Psyr_2627 0.82 +1.9 3,188,123 + Psyr_2627 0.82 +1.5 3,188,428 + Psyr_2628 0.14 +3.5 3,188,429 - Psyr_2628 0.14 +1.5 3,188,491 + Psyr_2628 0.23 +2.2 3,188,513 - Psyr_2628 0.26 -0.1 3,188,513 - Psyr_2628 0.26 +0.6 3,188,771 + Psyr_2628 0.64 +2.7 3,188,771 + Psyr_2628 0.64 -0.1 3,188,771 + Psyr_2628 0.64 +0.9 3,188,771 + Psyr_2628 0.64 +2.9 3,188,772 - Psyr_2628 0.64 -1.7 3,188,772 - Psyr_2628 0.64 -0.3 3,188,772 - Psyr_2628 0.64 -0.2 3,189,115 + -2.3 3,189,115 + -0.5 3,189,115 + +0.9 3,189,115 + +0.1 3,189,115 + -1.7 3,189,115 + -3.1 3,189,115 + +0.0 3,189,116 - +1.3 3,189,116 - -0.9 3,189,116 - -2.4 3,189,116 - +3.3 3,189,116 - +2.3 3,189,116 - +4.1 3,189,116 - -0.7 3,189,227 - Psyr_2629 0.10 +0.9 3,189,244 + Psyr_2629 0.11 +1.5 3,189,653 - Psyr_2629 0.32 -2.3 3,189,743 - Psyr_2629 0.36 +2.2 3,189,743 - Psyr_2629 0.36 -2.2 3,189,766 + Psyr_2629 0.37 -2.3 3,189,766 + Psyr_2629 0.37 +0.5 3,189,766 + Psyr_2629 0.37 -0.5 3,189,766 + Psyr_2629 0.37 -0.1 3,189,845 - Psyr_2629 0.41 -0.3 3,189,845 - Psyr_2629 0.41 +0.9 3,189,879 + Psyr_2629 0.43 +2.2 3,189,958 + Psyr_2629 0.47 -3.5 3,189,959 - Psyr_2629 0.47 -1.6 3,190,016 - Psyr_2629 0.50 -0.3
Or see this region's nucleotide sequence