Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2432 and Psyr_2433 are separated by 168 nucleotides Psyr_2433 and Psyr_2434 are separated by 84 nucleotides Psyr_2434 and Psyr_2435 are separated by 22 nucleotides
Psyr_2432: Psyr_2432 - diguanylate cyclase/phosphodiesterase, at 2,814,290 to 2,817,199
_2432
Psyr_2433: Psyr_2433 - conserved hypothetical protein, at 2,817,368 to 2,817,922
_2433
Psyr_2434: Psyr_2434 - Carbohydrate kinase, PfkB, at 2,818,007 to 2,818,945
_2434
Psyr_2435: Psyr_2435 - Xylulokinase, at 2,818,968 to 2,820,449
_2435
Position (kb)
2818
2819 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2817.137 kb on + strand at 2817.137 kb on + strand at 2817.137 kb on + strand at 2817.137 kb on + strand at 2817.138 kb on - strand at 2817.138 kb on - strand at 2817.373 kb on + strand at 2817.373 kb on + strand at 2817.374 kb on - strand at 2817.557 kb on + strand, within Psyr_2433 at 2817.557 kb on + strand, within Psyr_2433 at 2817.558 kb on - strand, within Psyr_2433 at 2817.558 kb on - strand, within Psyr_2433 at 2817.607 kb on + strand, within Psyr_2433 at 2817.608 kb on - strand, within Psyr_2433 at 2817.705 kb on + strand, within Psyr_2433 at 2817.788 kb on + strand, within Psyr_2433 at 2817.789 kb on - strand, within Psyr_2433 at 2817.789 kb on - strand, within Psyr_2433 at 2817.789 kb on - strand, within Psyr_2433 at 2817.789 kb on - strand, within Psyr_2433 at 2817.985 kb on + strand at 2818.184 kb on - strand at 2818.303 kb on + strand, within Psyr_2434 at 2818.304 kb on - strand, within Psyr_2434 at 2818.304 kb on - strand, within Psyr_2434 at 2818.647 kb on + strand, within Psyr_2434 at 2818.647 kb on + strand, within Psyr_2434 at 2818.647 kb on + strand, within Psyr_2434 at 2818.648 kb on - strand, within Psyr_2434 at 2818.648 kb on - strand, within Psyr_2434 at 2818.648 kb on - strand, within Psyr_2434 at 2818.771 kb on - strand, within Psyr_2434 at 2818.945 kb on + strand at 2818.945 kb on + strand at 2818.945 kb on + strand at 2818.945 kb on + strand at 2818.945 kb on + strand at 2818.945 kb on + strand at 2818.946 kb on - strand at 2818.946 kb on - strand at 2818.994 kb on - strand at 2819.002 kb on + strand at 2819.318 kb on + strand, within Psyr_2435 at 2819.641 kb on + strand, within Psyr_2435 at 2819.641 kb on + strand, within Psyr_2435 at 2819.641 kb on + strand, within Psyr_2435 at 2819.642 kb on - strand, within Psyr_2435 at 2819.691 kb on - strand, within Psyr_2435
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 2,817,137 + -0.3 2,817,137 + -3.2 2,817,137 + -1.8 2,817,137 + +3.1 2,817,138 - +3.5 2,817,138 - -1.3 2,817,373 + -0.5 2,817,373 + -0.3 2,817,374 - +0.9 2,817,557 + Psyr_2433 0.34 +3.2 2,817,557 + Psyr_2433 0.34 +3.5 2,817,558 - Psyr_2433 0.34 +2.5 2,817,558 - Psyr_2433 0.34 +0.2 2,817,607 + Psyr_2433 0.43 +3.9 2,817,608 - Psyr_2433 0.43 -0.1 2,817,705 + Psyr_2433 0.61 +3.3 2,817,788 + Psyr_2433 0.76 -2.0 2,817,789 - Psyr_2433 0.76 -0.1 2,817,789 - Psyr_2433 0.76 -0.6 2,817,789 - Psyr_2433 0.76 +1.0 2,817,789 - Psyr_2433 0.76 -2.1 2,817,985 + -2.4 2,818,184 - +0.9 2,818,303 + Psyr_2434 0.32 +2.5 2,818,304 - Psyr_2434 0.32 -2.6 2,818,304 - Psyr_2434 0.32 +2.7 2,818,647 + Psyr_2434 0.68 +3.3 2,818,647 + Psyr_2434 0.68 +4.1 2,818,647 + Psyr_2434 0.68 +1.5 2,818,648 - Psyr_2434 0.68 +2.5 2,818,648 - Psyr_2434 0.68 +3.1 2,818,648 - Psyr_2434 0.68 +1.5 2,818,771 - Psyr_2434 0.81 -1.3 2,818,945 + -0.2 2,818,945 + -2.5 2,818,945 + -0.4 2,818,945 + -1.5 2,818,945 + +0.2 2,818,945 + -1.0 2,818,946 - +2.2 2,818,946 - +3.2 2,818,994 - +2.7 2,819,002 + -0.9 2,819,318 + Psyr_2435 0.24 +0.8 2,819,641 + Psyr_2435 0.45 +4.0 2,819,641 + Psyr_2435 0.45 -0.1 2,819,641 + Psyr_2435 0.45 -0.9 2,819,642 - Psyr_2435 0.45 +1.9 2,819,691 - Psyr_2435 0.49 -3.8
Or see this region's nucleotide sequence