Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2385

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2383 and Psyr_2384 are separated by 22 nucleotidesPsyr_2384 and Psyr_2385 overlap by 4 nucleotidesPsyr_2385 and Psyr_2386 are separated by 376 nucleotidesPsyr_2386 and Psyr_2387 are separated by 156 nucleotides Psyr_2383: Psyr_2383 - Protein of unknown function DUF72, at 2,761,819 to 2,762,553 _2383 Psyr_2384: Psyr_2384 - response regulator receiver protein, at 2,762,576 to 2,762,953 _2384 Psyr_2385: Psyr_2385 - Phytochrome:GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:HWE histidine kinase, at 2,762,950 to 2,765,961 _2385 Psyr_2386: Psyr_2386 - hypothetical protein, at 2,766,338 to 2,766,574 _2386 Psyr_2387: Psyr_2387 - Malate:quinone-oxidoreductase, at 2,766,731 to 2,768,386 _2387 Position (kb) 2762 2763 2764 2765 2766Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2761.975 kb on + strand, within Psyr_2383at 2762.354 kb on - strand, within Psyr_2383at 2762.396 kb on - strand, within Psyr_2383at 2762.554 kb on + strandat 2762.554 kb on + strandat 2762.554 kb on + strandat 2762.554 kb on + strandat 2762.554 kb on + strandat 2762.555 kb on - strandat 2762.785 kb on - strand, within Psyr_2384at 2762.953 kb on + strandat 2762.953 kb on + strandat 2762.954 kb on - strandat 2763.631 kb on + strand, within Psyr_2385at 2763.632 kb on - strand, within Psyr_2385at 2763.651 kb on + strand, within Psyr_2385at 2763.691 kb on + strand, within Psyr_2385at 2763.692 kb on - strand, within Psyr_2385at 2763.763 kb on - strand, within Psyr_2385at 2763.764 kb on + strand, within Psyr_2385at 2763.764 kb on + strand, within Psyr_2385at 2763.764 kb on + strand, within Psyr_2385at 2763.765 kb on - strand, within Psyr_2385at 2763.765 kb on - strand, within Psyr_2385at 2763.765 kb on - strand, within Psyr_2385at 2763.765 kb on - strand, within Psyr_2385at 2763.765 kb on - strand, within Psyr_2385at 2763.853 kb on + strand, within Psyr_2385at 2763.854 kb on - strand, within Psyr_2385at 2763.967 kb on + strand, within Psyr_2385at 2763.968 kb on - strand, within Psyr_2385at 2764.781 kb on + strand, within Psyr_2385at 2764.782 kb on - strand, within Psyr_2385at 2764.826 kb on + strand, within Psyr_2385at 2764.826 kb on + strand, within Psyr_2385at 2764.912 kb on + strand, within Psyr_2385at 2764.992 kb on + strand, within Psyr_2385at 2765.136 kb on + strand, within Psyr_2385at 2765.136 kb on + strand, within Psyr_2385at 2765.137 kb on - strand, within Psyr_2385at 2765.137 kb on - strand, within Psyr_2385at 2765.171 kb on + strand, within Psyr_2385at 2765.255 kb on - strand, within Psyr_2385at 2765.273 kb on + strand, within Psyr_2385at 2765.273 kb on + strand, within Psyr_2385at 2765.273 kb on + strand, within Psyr_2385at 2765.273 kb on + strand, within Psyr_2385at 2765.273 kb on + strand, within Psyr_2385at 2765.274 kb on - strand, within Psyr_2385at 2765.274 kb on - strand, within Psyr_2385at 2765.274 kb on - strand, within Psyr_2385at 2765.274 kb on - strand, within Psyr_2385at 2765.274 kb on - strand, within Psyr_2385at 2765.274 kb on - strand, within Psyr_2385at 2765.274 kb on - strand, within Psyr_2385at 2765.432 kb on + strand, within Psyr_2385at 2765.628 kb on - strand, within Psyr_2385at 2765.653 kb on + strand, within Psyr_2385at 2765.905 kb on + strandat 2766.098 kb on + strandat 2766.157 kb on + strandat 2766.157 kb on + strandat 2766.158 kb on - strandat 2766.158 kb on - strandat 2766.180 kb on + strandat 2766.180 kb on + strandat 2766.180 kb on + strandat 2766.181 kb on - strandat 2766.213 kb on - strandat 2766.218 kb on + strandat 2766.219 kb on - strandat 2766.226 kb on + strandat 2766.533 kb on + strand, within Psyr_2386at 2766.533 kb on + strand, within Psyr_2386at 2766.534 kb on - strand, within Psyr_2386at 2766.534 kb on - strand, within Psyr_2386at 2766.562 kb on + strandat 2766.563 kb on - strandat 2766.733 kb on - strandat 2766.800 kb on - strandat 2766.800 kb on - strandat 2766.852 kb on + strandat 2766.853 kb on - strandat 2766.853 kb on - strandat 2766.853 kb on - strandat 2766.853 kb on - strandat 2766.907 kb on + strand, within Psyr_2387at 2766.907 kb on + strand, within Psyr_2387at 2766.951 kb on - strand, within Psyr_2387

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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2,761,975 + Psyr_2383 0.21 -1.2
2,762,354 - Psyr_2383 0.73 -3.1
2,762,396 - Psyr_2383 0.79 -1.2
2,762,554 + -2.5
2,762,554 + +0.9
2,762,554 + -0.2
2,762,554 + -1.4
2,762,554 + +3.7
2,762,555 - +0.9
2,762,785 - Psyr_2384 0.55 +1.9
2,762,953 + -0.8
2,762,953 + +1.6
2,762,954 - -1.0
2,763,631 + Psyr_2385 0.23 -1.2
2,763,632 - Psyr_2385 0.23 +3.1
2,763,651 + Psyr_2385 0.23 -1.0
2,763,691 + Psyr_2385 0.25 +0.9
2,763,692 - Psyr_2385 0.25 -0.9
2,763,763 - Psyr_2385 0.27 -1.4
2,763,764 + Psyr_2385 0.27 -1.7
2,763,764 + Psyr_2385 0.27 +3.2
2,763,764 + Psyr_2385 0.27 +0.5
2,763,765 - Psyr_2385 0.27 -0.6
2,763,765 - Psyr_2385 0.27 -1.5
2,763,765 - Psyr_2385 0.27 +2.7
2,763,765 - Psyr_2385 0.27 +4.0
2,763,765 - Psyr_2385 0.27 -2.0
2,763,853 + Psyr_2385 0.30 +3.1
2,763,854 - Psyr_2385 0.30 +0.9
2,763,967 + Psyr_2385 0.34 -0.5
2,763,968 - Psyr_2385 0.34 -0.7
2,764,781 + Psyr_2385 0.61 +1.9
2,764,782 - Psyr_2385 0.61 -1.1
2,764,826 + Psyr_2385 0.62 +2.5
2,764,826 + Psyr_2385 0.62 -0.5
2,764,912 + Psyr_2385 0.65 -0.8
2,764,992 + Psyr_2385 0.68 +0.9
2,765,136 + Psyr_2385 0.73 -1.1
2,765,136 + Psyr_2385 0.73 -1.2
2,765,137 - Psyr_2385 0.73 +1.9
2,765,137 - Psyr_2385 0.73 +2.9
2,765,171 + Psyr_2385 0.74 +3.1
2,765,255 - Psyr_2385 0.77 -0.1
2,765,273 + Psyr_2385 0.77 +2.5
2,765,273 + Psyr_2385 0.77 -1.9
2,765,273 + Psyr_2385 0.77 -1.1
2,765,273 + Psyr_2385 0.77 -0.5
2,765,273 + Psyr_2385 0.77 +0.1
2,765,274 - Psyr_2385 0.77 +1.9
2,765,274 - Psyr_2385 0.77 -1.9
2,765,274 - Psyr_2385 0.77 +2.7
2,765,274 - Psyr_2385 0.77 +0.1
2,765,274 - Psyr_2385 0.77 -0.4
2,765,274 - Psyr_2385 0.77 -3.5
2,765,274 - Psyr_2385 0.77 -0.8
2,765,432 + Psyr_2385 0.82 +0.8
2,765,628 - Psyr_2385 0.89 +2.7
2,765,653 + Psyr_2385 0.90 +1.9
2,765,905 + -0.5
2,766,098 + -2.8
2,766,157 + +3.5
2,766,157 + -0.3
2,766,158 - +0.9
2,766,158 - -3.7
2,766,180 + +2.7
2,766,180 + +0.9
2,766,180 + +0.4
2,766,181 - -0.1
2,766,213 - +1.5
2,766,218 + +2.5
2,766,219 - -0.1
2,766,226 + -0.0
2,766,533 + Psyr_2386 0.82 +0.7
2,766,533 + Psyr_2386 0.82 -1.6
2,766,534 - Psyr_2386 0.83 -1.3
2,766,534 - Psyr_2386 0.83 -1.2
2,766,562 + +3.2
2,766,563 - -1.8
2,766,733 - +3.2
2,766,800 - -0.7
2,766,800 - +1.9
2,766,852 + +2.2
2,766,853 - -1.2
2,766,853 - -1.9
2,766,853 - +0.0
2,766,853 - +1.5
2,766,907 + Psyr_2387 0.11 +1.5
2,766,907 + Psyr_2387 0.11 +3.4
2,766,951 - Psyr_2387 0.13 +4.1

Or see this region's nucleotide sequence