Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2206 and Psyr_2207 overlap by 4 nucleotides Psyr_2207 and Psyr_2208 are separated by 223 nucleotides
Psyr_2206: Psyr_2206 - amino acid/amide ABC transporter substrate-binding protein, HAAT family, at 2,563,580 to 2,564,728
_2206
Psyr_2207: Psyr_2207 - ANTAR, at 2,564,725 to 2,565,357
_2207
Psyr_2208: Psyr_2208 - Amidase, at 2,565,581 to 2,567,116
_2208
Position (kb)
2564
2565
2566 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4 at 2563.893 kb on - strand, within Psyr_2206 at 2563.895 kb on + strand, within Psyr_2206 at 2563.895 kb on + strand, within Psyr_2206 at 2563.896 kb on - strand, within Psyr_2206 at 2563.928 kb on + strand, within Psyr_2206 at 2563.928 kb on + strand, within Psyr_2206 at 2563.928 kb on + strand, within Psyr_2206 at 2563.929 kb on - strand, within Psyr_2206 at 2563.929 kb on - strand, within Psyr_2206 at 2563.973 kb on + strand, within Psyr_2206 at 2563.973 kb on + strand, within Psyr_2206 at 2563.973 kb on + strand, within Psyr_2206 at 2563.974 kb on - strand, within Psyr_2206 at 2564.021 kb on + strand, within Psyr_2206 at 2564.021 kb on + strand, within Psyr_2206 at 2564.021 kb on + strand, within Psyr_2206 at 2564.022 kb on - strand, within Psyr_2206 at 2564.022 kb on - strand, within Psyr_2206 at 2564.096 kb on + strand, within Psyr_2206 at 2564.099 kb on + strand, within Psyr_2206 at 2564.099 kb on + strand, within Psyr_2206 at 2564.099 kb on + strand, within Psyr_2206 at 2564.100 kb on - strand, within Psyr_2206 at 2564.100 kb on - strand, within Psyr_2206 at 2564.217 kb on - strand, within Psyr_2206 at 2564.342 kb on + strand, within Psyr_2206 at 2564.342 kb on + strand, within Psyr_2206 at 2564.444 kb on + strand, within Psyr_2206 at 2564.444 kb on + strand, within Psyr_2206 at 2564.445 kb on - strand, within Psyr_2206 at 2564.445 kb on - strand, within Psyr_2206 at 2564.581 kb on + strand, within Psyr_2206 at 2564.581 kb on + strand, within Psyr_2206 at 2564.582 kb on - strand, within Psyr_2206 at 2564.585 kb on + strand, within Psyr_2206 at 2564.585 kb on + strand, within Psyr_2206 at 2564.585 kb on + strand, within Psyr_2206 at 2564.586 kb on - strand, within Psyr_2206 at 2564.586 kb on - strand, within Psyr_2206 at 2564.586 kb on - strand, within Psyr_2206 at 2564.586 kb on - strand, within Psyr_2206 at 2564.586 kb on - strand, within Psyr_2206 at 2564.591 kb on + strand, within Psyr_2206 at 2565.253 kb on + strand, within Psyr_2207 at 2565.424 kb on + strand at 2565.443 kb on + strand at 2565.589 kb on - strand at 2565.722 kb on + strand at 2565.722 kb on + strand at 2565.722 kb on + strand at 2565.722 kb on + strand at 2565.722 kb on + strand at 2565.723 kb on - strand at 2565.723 kb on - strand at 2565.723 kb on - strand at 2565.804 kb on - strand, within Psyr_2208 at 2566.033 kb on + strand, within Psyr_2208 at 2566.210 kb on + strand, within Psyr_2208 at 2566.214 kb on + strand, within Psyr_2208 at 2566.214 kb on + strand, within Psyr_2208 at 2566.229 kb on + strand, within Psyr_2208 at 2566.230 kb on - strand, within Psyr_2208
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 2,563,893 - Psyr_2206 0.27 -5.4 2,563,895 + Psyr_2206 0.27 -0.9 2,563,895 + Psyr_2206 0.27 -1.1 2,563,896 - Psyr_2206 0.28 -2.0 2,563,928 + Psyr_2206 0.30 +0.7 2,563,928 + Psyr_2206 0.30 -1.3 2,563,928 + Psyr_2206 0.30 +0.1 2,563,929 - Psyr_2206 0.30 +1.4 2,563,929 - Psyr_2206 0.30 +0.9 2,563,973 + Psyr_2206 0.34 +1.9 2,563,973 + Psyr_2206 0.34 -2.7 2,563,973 + Psyr_2206 0.34 -2.8 2,563,974 - Psyr_2206 0.34 -0.7 2,564,021 + Psyr_2206 0.38 -1.1 2,564,021 + Psyr_2206 0.38 +0.4 2,564,021 + Psyr_2206 0.38 -1.0 2,564,022 - Psyr_2206 0.38 -1.2 2,564,022 - Psyr_2206 0.38 -2.3 2,564,096 + Psyr_2206 0.45 +3.2 2,564,099 + Psyr_2206 0.45 -2.1 2,564,099 + Psyr_2206 0.45 -0.5 2,564,099 + Psyr_2206 0.45 +1.9 2,564,100 - Psyr_2206 0.45 +2.4 2,564,100 - Psyr_2206 0.45 -3.1 2,564,217 - Psyr_2206 0.55 +3.6 2,564,342 + Psyr_2206 0.66 +4.1 2,564,342 + Psyr_2206 0.66 -0.8 2,564,444 + Psyr_2206 0.75 +3.2 2,564,444 + Psyr_2206 0.75 -1.4 2,564,445 - Psyr_2206 0.75 +2.4 2,564,445 - Psyr_2206 0.75 +1.9 2,564,581 + Psyr_2206 0.87 +2.2 2,564,581 + Psyr_2206 0.87 +3.8 2,564,582 - Psyr_2206 0.87 -0.6 2,564,585 + Psyr_2206 0.87 +2.4 2,564,585 + Psyr_2206 0.87 +2.4 2,564,585 + Psyr_2206 0.87 -0.7 2,564,586 - Psyr_2206 0.88 +1.3 2,564,586 - Psyr_2206 0.88 -2.2 2,564,586 - Psyr_2206 0.88 +0.9 2,564,586 - Psyr_2206 0.88 +1.4 2,564,586 - Psyr_2206 0.88 -1.8 2,564,591 + Psyr_2206 0.88 -1.7 2,565,253 + Psyr_2207 0.83 -1.1 2,565,424 + +0.9 2,565,443 + +0.9 2,565,589 - +0.9 2,565,722 + -0.1 2,565,722 + +2.2 2,565,722 + -1.3 2,565,722 + -1.6 2,565,722 + +0.9 2,565,723 - +2.7 2,565,723 - +2.5 2,565,723 - -1.4 2,565,804 - Psyr_2208 0.15 +0.9 2,566,033 + Psyr_2208 0.29 -0.9 2,566,210 + Psyr_2208 0.41 +0.2 2,566,214 + Psyr_2208 0.41 +1.9 2,566,214 + Psyr_2208 0.41 -1.4 2,566,229 + Psyr_2208 0.42 +2.5 2,566,230 - Psyr_2208 0.42 +0.5
Or see this region's nucleotide sequence