Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2130 and Psyr_2131 are separated by 107 nucleotides Psyr_2131 and Psyr_2132 are separated by 3 nucleotides Psyr_2132 and Psyr_2133 are separated by 135 nucleotides
Psyr_2130: Psyr_2130 - 4-hydroxyphenylpyruvate dioxygenase, at 2,489,489 to 2,491,396
_2130
Psyr_2131: Psyr_2131 - transcriptional regulator, TetR family, at 2,491,504 to 2,492,160
_2131
Psyr_2132: Psyr_2132 - shikimate dehydrogenase, at 2,492,164 to 2,493,018
_2132
Psyr_2133: Psyr_2133 - Pseudouridine synthase, at 2,493,154 to 2,494,095
_2133
Position (kb)
2491
2492
2493 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2490.530 kb on + strand, within Psyr_2130 at 2490.531 kb on - strand, within Psyr_2130 at 2490.716 kb on + strand, within Psyr_2130 at 2490.716 kb on + strand, within Psyr_2130 at 2490.716 kb on + strand, within Psyr_2130 at 2490.716 kb on + strand, within Psyr_2130 at 2490.716 kb on + strand, within Psyr_2130 at 2490.716 kb on + strand, within Psyr_2130 at 2490.716 kb on + strand, within Psyr_2130 at 2490.717 kb on - strand, within Psyr_2130 at 2490.867 kb on - strand, within Psyr_2130 at 2491.029 kb on - strand, within Psyr_2130 at 2491.087 kb on - strand, within Psyr_2130 at 2491.111 kb on - strand, within Psyr_2130 at 2491.136 kb on + strand, within Psyr_2130 at 2491.136 kb on + strand, within Psyr_2130 at 2491.137 kb on - strand, within Psyr_2130 at 2491.137 kb on - strand, within Psyr_2130 at 2491.137 kb on - strand, within Psyr_2130 at 2491.139 kb on + strand, within Psyr_2130 at 2491.139 kb on + strand, within Psyr_2130 at 2491.140 kb on - strand, within Psyr_2130 at 2491.140 kb on - strand, within Psyr_2130 at 2491.140 kb on - strand, within Psyr_2130 at 2491.197 kb on - strand, within Psyr_2130 at 2491.199 kb on + strand, within Psyr_2130 at 2491.199 kb on + strand, within Psyr_2130 at 2491.200 kb on - strand, within Psyr_2130 at 2491.200 kb on - strand, within Psyr_2130 at 2491.200 kb on - strand, within Psyr_2130 at 2491.200 kb on - strand, within Psyr_2130 at 2491.200 kb on - strand, within Psyr_2130 at 2491.200 kb on - strand, within Psyr_2130 at 2491.200 kb on - strand, within Psyr_2130 at 2491.200 kb on - strand, within Psyr_2130 at 2491.212 kb on - strand at 2491.471 kb on - strand at 2491.678 kb on + strand, within Psyr_2131 at 2491.678 kb on + strand, within Psyr_2131 at 2491.678 kb on + strand, within Psyr_2131 at 2491.678 kb on + strand, within Psyr_2131 at 2491.678 kb on + strand, within Psyr_2131 at 2491.678 kb on + strand, within Psyr_2131 at 2491.678 kb on + strand, within Psyr_2131 at 2491.678 kb on + strand, within Psyr_2131 at 2491.678 kb on + strand, within Psyr_2131 at 2491.678 kb on + strand, within Psyr_2131 at 2491.678 kb on + strand, within Psyr_2131 at 2491.678 kb on + strand, within Psyr_2131 at 2491.679 kb on - strand, within Psyr_2131 at 2491.679 kb on - strand, within Psyr_2131 at 2491.679 kb on - strand, within Psyr_2131 at 2491.679 kb on - strand, within Psyr_2131 at 2491.679 kb on - strand, within Psyr_2131 at 2491.679 kb on - strand, within Psyr_2131 at 2491.679 kb on - strand, within Psyr_2131 at 2491.679 kb on - strand, within Psyr_2131 at 2491.679 kb on - strand, within Psyr_2131 at 2491.679 kb on - strand, within Psyr_2131 at 2491.679 kb on - strand, within Psyr_2131 at 2491.679 kb on - strand, within Psyr_2131 at 2491.681 kb on + strand, within Psyr_2131 at 2491.681 kb on + strand, within Psyr_2131 at 2491.682 kb on - strand, within Psyr_2131 at 2491.682 kb on - strand, within Psyr_2131 at 2491.684 kb on + strand, within Psyr_2131 at 2491.684 kb on + strand, within Psyr_2131 at 2491.684 kb on + strand, within Psyr_2131 at 2491.708 kb on + strand, within Psyr_2131 at 2491.708 kb on + strand, within Psyr_2131 at 2491.709 kb on - strand, within Psyr_2131 at 2492.146 kb on + strand at 2492.166 kb on - strand at 2492.166 kb on - strand at 2492.166 kb on - strand at 2492.166 kb on - strand at 2492.166 kb on - strand at 2492.327 kb on + strand, within Psyr_2132 at 2492.328 kb on - strand, within Psyr_2132 at 2492.415 kb on + strand, within Psyr_2132 at 2492.620 kb on + strand, within Psyr_2132 at 2492.621 kb on - strand, within Psyr_2132 at 2492.621 kb on - strand, within Psyr_2132 at 2492.621 kb on - strand, within Psyr_2132 at 2492.725 kb on - strand, within Psyr_2132 at 2493.024 kb on + strand at 2493.024 kb on + strand at 2493.024 kb on + strand at 2493.024 kb on + strand at 2493.025 kb on - strand at 2493.025 kb on - strand at 2493.025 kb on - strand at 2493.025 kb on - strand at 2493.158 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 2,490,530 + Psyr_2130 0.55 -1.9 2,490,531 - Psyr_2130 0.55 +4.5 2,490,716 + Psyr_2130 0.64 -1.3 2,490,716 + Psyr_2130 0.64 -0.2 2,490,716 + Psyr_2130 0.64 -1.0 2,490,716 + Psyr_2130 0.64 +1.4 2,490,716 + Psyr_2130 0.64 -2.7 2,490,716 + Psyr_2130 0.64 -1.4 2,490,716 + Psyr_2130 0.64 -3.2 2,490,717 - Psyr_2130 0.64 -1.5 2,490,867 - Psyr_2130 0.72 +3.0 2,491,029 - Psyr_2130 0.81 +3.2 2,491,087 - Psyr_2130 0.84 +3.7 2,491,111 - Psyr_2130 0.85 +3.0 2,491,136 + Psyr_2130 0.86 -1.0 2,491,136 + Psyr_2130 0.86 -0.5 2,491,137 - Psyr_2130 0.86 +3.2 2,491,137 - Psyr_2130 0.86 +0.1 2,491,137 - Psyr_2130 0.86 +2.4 2,491,139 + Psyr_2130 0.86 +0.7 2,491,139 + Psyr_2130 0.86 -1.2 2,491,140 - Psyr_2130 0.87 +2.8 2,491,140 - Psyr_2130 0.87 -0.9 2,491,140 - Psyr_2130 0.87 -1.8 2,491,197 - Psyr_2130 0.90 -0.2 2,491,199 + Psyr_2130 0.90 -0.8 2,491,199 + Psyr_2130 0.90 +3.7 2,491,200 - Psyr_2130 0.90 -2.2 2,491,200 - Psyr_2130 0.90 -1.4 2,491,200 - Psyr_2130 0.90 -0.3 2,491,200 - Psyr_2130 0.90 +0.3 2,491,200 - Psyr_2130 0.90 -1.7 2,491,200 - Psyr_2130 0.90 -0.9 2,491,200 - Psyr_2130 0.90 +2.2 2,491,200 - Psyr_2130 0.90 -2.0 2,491,212 - +2.8 2,491,471 - -0.2 2,491,678 + Psyr_2131 0.26 -0.8 2,491,678 + Psyr_2131 0.26 +3.5 2,491,678 + Psyr_2131 0.26 -0.2 2,491,678 + Psyr_2131 0.26 +0.0 2,491,678 + Psyr_2131 0.26 +2.4 2,491,678 + Psyr_2131 0.26 +1.8 2,491,678 + Psyr_2131 0.26 +1.8 2,491,678 + Psyr_2131 0.26 +3.7 2,491,678 + Psyr_2131 0.26 -2.3 2,491,678 + Psyr_2131 0.26 -3.2 2,491,678 + Psyr_2131 0.26 -3.3 2,491,678 + Psyr_2131 0.26 -1.4 2,491,679 - Psyr_2131 0.27 +3.2 2,491,679 - Psyr_2131 0.27 -2.4 2,491,679 - Psyr_2131 0.27 -1.8 2,491,679 - Psyr_2131 0.27 -1.7 2,491,679 - Psyr_2131 0.27 -2.5 2,491,679 - Psyr_2131 0.27 -0.9 2,491,679 - Psyr_2131 0.27 -4.2 2,491,679 - Psyr_2131 0.27 +0.6 2,491,679 - Psyr_2131 0.27 -1.0 2,491,679 - Psyr_2131 0.27 -0.4 2,491,679 - Psyr_2131 0.27 +0.5 2,491,679 - Psyr_2131 0.27 +2.7 2,491,681 + Psyr_2131 0.27 +3.4 2,491,681 + Psyr_2131 0.27 +0.6 2,491,682 - Psyr_2131 0.27 +3.0 2,491,682 - Psyr_2131 0.27 +2.8 2,491,684 + Psyr_2131 0.27 +0.3 2,491,684 + Psyr_2131 0.27 -0.9 2,491,684 + Psyr_2131 0.27 +0.8 2,491,708 + Psyr_2131 0.31 +0.7 2,491,708 + Psyr_2131 0.31 -0.9 2,491,709 - Psyr_2131 0.31 -1.5 2,492,146 + +0.9 2,492,166 - -1.2 2,492,166 - -0.8 2,492,166 - -0.6 2,492,166 - +4.1 2,492,166 - +1.7 2,492,327 + Psyr_2132 0.19 +0.2 2,492,328 - Psyr_2132 0.19 -0.7 2,492,415 + Psyr_2132 0.29 +2.7 2,492,620 + Psyr_2132 0.53 +4.1 2,492,621 - Psyr_2132 0.53 +0.9 2,492,621 - Psyr_2132 0.53 -2.2 2,492,621 - Psyr_2132 0.53 -0.3 2,492,725 - Psyr_2132 0.66 +4.7 2,493,024 + -1.3 2,493,024 + -0.6 2,493,024 + +2.7 2,493,024 + -0.5 2,493,025 - +3.3 2,493,025 - -1.7 2,493,025 - +2.2 2,493,025 - -1.3 2,493,158 + +3.4
Or see this region's nucleotide sequence