Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2131

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2130 and Psyr_2131 are separated by 107 nucleotidesPsyr_2131 and Psyr_2132 are separated by 3 nucleotidesPsyr_2132 and Psyr_2133 are separated by 135 nucleotides Psyr_2130: Psyr_2130 - 4-hydroxyphenylpyruvate dioxygenase, at 2,489,489 to 2,491,396 _2130 Psyr_2131: Psyr_2131 - transcriptional regulator, TetR family, at 2,491,504 to 2,492,160 _2131 Psyr_2132: Psyr_2132 - shikimate dehydrogenase, at 2,492,164 to 2,493,018 _2132 Psyr_2133: Psyr_2133 - Pseudouridine synthase, at 2,493,154 to 2,494,095 _2133 Position (kb) 2491 2492 2493Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2490.530 kb on + strand, within Psyr_2130at 2490.531 kb on - strand, within Psyr_2130at 2490.716 kb on + strand, within Psyr_2130at 2490.716 kb on + strand, within Psyr_2130at 2490.716 kb on + strand, within Psyr_2130at 2490.716 kb on + strand, within Psyr_2130at 2490.716 kb on + strand, within Psyr_2130at 2490.716 kb on + strand, within Psyr_2130at 2490.716 kb on + strand, within Psyr_2130at 2490.717 kb on - strand, within Psyr_2130at 2490.867 kb on - strand, within Psyr_2130at 2491.029 kb on - strand, within Psyr_2130at 2491.087 kb on - strand, within Psyr_2130at 2491.111 kb on - strand, within Psyr_2130at 2491.136 kb on + strand, within Psyr_2130at 2491.136 kb on + strand, within Psyr_2130at 2491.137 kb on - strand, within Psyr_2130at 2491.137 kb on - strand, within Psyr_2130at 2491.137 kb on - strand, within Psyr_2130at 2491.139 kb on + strand, within Psyr_2130at 2491.139 kb on + strand, within Psyr_2130at 2491.140 kb on - strand, within Psyr_2130at 2491.140 kb on - strand, within Psyr_2130at 2491.140 kb on - strand, within Psyr_2130at 2491.197 kb on - strand, within Psyr_2130at 2491.199 kb on + strand, within Psyr_2130at 2491.199 kb on + strand, within Psyr_2130at 2491.200 kb on - strand, within Psyr_2130at 2491.200 kb on - strand, within Psyr_2130at 2491.200 kb on - strand, within Psyr_2130at 2491.200 kb on - strand, within Psyr_2130at 2491.200 kb on - strand, within Psyr_2130at 2491.200 kb on - strand, within Psyr_2130at 2491.200 kb on - strand, within Psyr_2130at 2491.200 kb on - strand, within Psyr_2130at 2491.212 kb on - strandat 2491.471 kb on - strandat 2491.678 kb on + strand, within Psyr_2131at 2491.678 kb on + strand, within Psyr_2131at 2491.678 kb on + strand, within Psyr_2131at 2491.678 kb on + strand, within Psyr_2131at 2491.678 kb on + strand, within Psyr_2131at 2491.678 kb on + strand, within Psyr_2131at 2491.678 kb on + strand, within Psyr_2131at 2491.678 kb on + strand, within Psyr_2131at 2491.678 kb on + strand, within Psyr_2131at 2491.678 kb on + strand, within Psyr_2131at 2491.678 kb on + strand, within Psyr_2131at 2491.678 kb on + strand, within Psyr_2131at 2491.679 kb on - strand, within Psyr_2131at 2491.679 kb on - strand, within Psyr_2131at 2491.679 kb on - strand, within Psyr_2131at 2491.679 kb on - strand, within Psyr_2131at 2491.679 kb on - strand, within Psyr_2131at 2491.679 kb on - strand, within Psyr_2131at 2491.679 kb on - strand, within Psyr_2131at 2491.679 kb on - strand, within Psyr_2131at 2491.679 kb on - strand, within Psyr_2131at 2491.679 kb on - strand, within Psyr_2131at 2491.679 kb on - strand, within Psyr_2131at 2491.679 kb on - strand, within Psyr_2131at 2491.681 kb on + strand, within Psyr_2131at 2491.681 kb on + strand, within Psyr_2131at 2491.682 kb on - strand, within Psyr_2131at 2491.682 kb on - strand, within Psyr_2131at 2491.684 kb on + strand, within Psyr_2131at 2491.684 kb on + strand, within Psyr_2131at 2491.684 kb on + strand, within Psyr_2131at 2491.708 kb on + strand, within Psyr_2131at 2491.708 kb on + strand, within Psyr_2131at 2491.709 kb on - strand, within Psyr_2131at 2492.146 kb on + strandat 2492.166 kb on - strandat 2492.166 kb on - strandat 2492.166 kb on - strandat 2492.166 kb on - strandat 2492.166 kb on - strandat 2492.327 kb on + strand, within Psyr_2132at 2492.328 kb on - strand, within Psyr_2132at 2492.415 kb on + strand, within Psyr_2132at 2492.620 kb on + strand, within Psyr_2132at 2492.621 kb on - strand, within Psyr_2132at 2492.621 kb on - strand, within Psyr_2132at 2492.621 kb on - strand, within Psyr_2132at 2492.725 kb on - strand, within Psyr_2132at 2493.024 kb on + strandat 2493.024 kb on + strandat 2493.024 kb on + strandat 2493.024 kb on + strandat 2493.025 kb on - strandat 2493.025 kb on - strandat 2493.025 kb on - strandat 2493.025 kb on - strandat 2493.158 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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2,490,530 + Psyr_2130 0.55 -1.9
2,490,531 - Psyr_2130 0.55 +4.5
2,490,716 + Psyr_2130 0.64 -1.3
2,490,716 + Psyr_2130 0.64 -0.2
2,490,716 + Psyr_2130 0.64 -1.0
2,490,716 + Psyr_2130 0.64 +1.4
2,490,716 + Psyr_2130 0.64 -2.7
2,490,716 + Psyr_2130 0.64 -1.4
2,490,716 + Psyr_2130 0.64 -3.2
2,490,717 - Psyr_2130 0.64 -1.5
2,490,867 - Psyr_2130 0.72 +3.0
2,491,029 - Psyr_2130 0.81 +3.2
2,491,087 - Psyr_2130 0.84 +3.7
2,491,111 - Psyr_2130 0.85 +3.0
2,491,136 + Psyr_2130 0.86 -1.0
2,491,136 + Psyr_2130 0.86 -0.5
2,491,137 - Psyr_2130 0.86 +3.2
2,491,137 - Psyr_2130 0.86 +0.1
2,491,137 - Psyr_2130 0.86 +2.4
2,491,139 + Psyr_2130 0.86 +0.7
2,491,139 + Psyr_2130 0.86 -1.2
2,491,140 - Psyr_2130 0.87 +2.8
2,491,140 - Psyr_2130 0.87 -0.9
2,491,140 - Psyr_2130 0.87 -1.8
2,491,197 - Psyr_2130 0.90 -0.2
2,491,199 + Psyr_2130 0.90 -0.8
2,491,199 + Psyr_2130 0.90 +3.7
2,491,200 - Psyr_2130 0.90 -2.2
2,491,200 - Psyr_2130 0.90 -1.4
2,491,200 - Psyr_2130 0.90 -0.3
2,491,200 - Psyr_2130 0.90 +0.3
2,491,200 - Psyr_2130 0.90 -1.7
2,491,200 - Psyr_2130 0.90 -0.9
2,491,200 - Psyr_2130 0.90 +2.2
2,491,200 - Psyr_2130 0.90 -2.0
2,491,212 - +2.8
2,491,471 - -0.2
2,491,678 + Psyr_2131 0.26 -0.8
2,491,678 + Psyr_2131 0.26 +3.5
2,491,678 + Psyr_2131 0.26 -0.2
2,491,678 + Psyr_2131 0.26 +0.0
2,491,678 + Psyr_2131 0.26 +2.4
2,491,678 + Psyr_2131 0.26 +1.8
2,491,678 + Psyr_2131 0.26 +1.8
2,491,678 + Psyr_2131 0.26 +3.7
2,491,678 + Psyr_2131 0.26 -2.3
2,491,678 + Psyr_2131 0.26 -3.2
2,491,678 + Psyr_2131 0.26 -3.3
2,491,678 + Psyr_2131 0.26 -1.4
2,491,679 - Psyr_2131 0.27 +3.2
2,491,679 - Psyr_2131 0.27 -2.4
2,491,679 - Psyr_2131 0.27 -1.8
2,491,679 - Psyr_2131 0.27 -1.7
2,491,679 - Psyr_2131 0.27 -2.5
2,491,679 - Psyr_2131 0.27 -0.9
2,491,679 - Psyr_2131 0.27 -4.2
2,491,679 - Psyr_2131 0.27 +0.6
2,491,679 - Psyr_2131 0.27 -1.0
2,491,679 - Psyr_2131 0.27 -0.4
2,491,679 - Psyr_2131 0.27 +0.5
2,491,679 - Psyr_2131 0.27 +2.7
2,491,681 + Psyr_2131 0.27 +3.4
2,491,681 + Psyr_2131 0.27 +0.6
2,491,682 - Psyr_2131 0.27 +3.0
2,491,682 - Psyr_2131 0.27 +2.8
2,491,684 + Psyr_2131 0.27 +0.3
2,491,684 + Psyr_2131 0.27 -0.9
2,491,684 + Psyr_2131 0.27 +0.8
2,491,708 + Psyr_2131 0.31 +0.7
2,491,708 + Psyr_2131 0.31 -0.9
2,491,709 - Psyr_2131 0.31 -1.5
2,492,146 + +0.9
2,492,166 - -1.2
2,492,166 - -0.8
2,492,166 - -0.6
2,492,166 - +4.1
2,492,166 - +1.7
2,492,327 + Psyr_2132 0.19 +0.2
2,492,328 - Psyr_2132 0.19 -0.7
2,492,415 + Psyr_2132 0.29 +2.7
2,492,620 + Psyr_2132 0.53 +4.1
2,492,621 - Psyr_2132 0.53 +0.9
2,492,621 - Psyr_2132 0.53 -2.2
2,492,621 - Psyr_2132 0.53 -0.3
2,492,725 - Psyr_2132 0.66 +4.7
2,493,024 + -1.3
2,493,024 + -0.6
2,493,024 + +2.7
2,493,024 + -0.5
2,493,025 - +3.3
2,493,025 - -1.7
2,493,025 - +2.2
2,493,025 - -1.3
2,493,158 + +3.4

Or see this region's nucleotide sequence