Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2057 and Psyr_2058 are separated by 12 nucleotides Psyr_2058 and Psyr_2059 are separated by 107 nucleotides Psyr_2059 and Psyr_2060 are separated by 102 nucleotides
Psyr_2057: Psyr_2057 - acyl-CoA thioesterase II, putative, at 2,404,082 to 2,404,879
_2057
Psyr_2058: Psyr_2058 - conserved domain protein, at 2,404,892 to 2,405,134
_2058
Psyr_2059: Psyr_2059 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 2,405,242 to 2,406,717
_2059
Psyr_2060: Psyr_2060 - Sec-independent protein translocase TatD, at 2,406,820 to 2,407,641
_2060
Position (kb)
2405
2406
2407 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2404.378 kb on - strand, within Psyr_2057 at 2404.378 kb on - strand, within Psyr_2057 at 2404.500 kb on - strand, within Psyr_2057 at 2404.763 kb on + strand, within Psyr_2057 at 2404.869 kb on + strand at 2404.870 kb on - strand at 2405.049 kb on + strand, within Psyr_2058 at 2405.160 kb on + strand at 2405.186 kb on + strand at 2405.187 kb on - strand at 2405.225 kb on - strand at 2405.244 kb on - strand at 2405.359 kb on - strand at 2405.630 kb on - strand, within Psyr_2059 at 2406.501 kb on - strand, within Psyr_2059 at 2406.508 kb on + strand, within Psyr_2059 at 2406.509 kb on - strand, within Psyr_2059 at 2406.513 kb on + strand, within Psyr_2059 at 2406.514 kb on - strand, within Psyr_2059 at 2406.626 kb on + strand at 2406.683 kb on + strand at 2406.683 kb on + strand at 2406.684 kb on - strand at 2406.684 kb on - strand at 2406.684 kb on - strand at 2406.822 kb on - strand at 2406.925 kb on + strand, within Psyr_2060 at 2406.925 kb on + strand, within Psyr_2060 at 2406.925 kb on + strand, within Psyr_2060 at 2406.925 kb on + strand, within Psyr_2060 at 2407.133 kb on + strand, within Psyr_2060 at 2407.337 kb on + strand, within Psyr_2060 at 2407.337 kb on + strand, within Psyr_2060 at 2407.337 kb on + strand, within Psyr_2060 at 2407.562 kb on + strand at 2407.647 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 2,404,378 - Psyr_2057 0.37 +2.7 2,404,378 - Psyr_2057 0.37 +2.7 2,404,500 - Psyr_2057 0.52 +1.4 2,404,763 + Psyr_2057 0.85 +1.2 2,404,869 + +3.2 2,404,870 - +1.9 2,405,049 + Psyr_2058 0.65 -1.3 2,405,160 + -1.6 2,405,186 + +1.0 2,405,187 - +2.2 2,405,225 - -2.4 2,405,244 - -1.4 2,405,359 - +3.3 2,405,630 - Psyr_2059 0.26 +0.9 2,406,501 - Psyr_2059 0.85 +1.9 2,406,508 + Psyr_2059 0.86 +1.7 2,406,509 - Psyr_2059 0.86 +0.6 2,406,513 + Psyr_2059 0.86 +1.5 2,406,514 - Psyr_2059 0.86 -0.1 2,406,626 + +3.2 2,406,683 + -1.9 2,406,683 + -1.5 2,406,684 - +1.8 2,406,684 - -1.3 2,406,684 - -2.2 2,406,822 - -0.2 2,406,925 + Psyr_2060 0.13 -2.0 2,406,925 + Psyr_2060 0.13 -4.1 2,406,925 + Psyr_2060 0.13 +3.2 2,406,925 + Psyr_2060 0.13 +1.8 2,407,133 + Psyr_2060 0.38 -0.0 2,407,337 + Psyr_2060 0.63 +3.4 2,407,337 + Psyr_2060 0.63 +3.6 2,407,337 + Psyr_2060 0.63 -0.5 2,407,562 + +2.8 2,407,647 + -0.6
Or see this region's nucleotide sequence