Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2026 and Psyr_2027 overlap by 4 nucleotides Psyr_2027 and Psyr_2028 are separated by 127 nucleotides
Psyr_2026: Psyr_2026 - conserved hypothetical protein, at 2,350,634 to 2,351,443
_2026
Psyr_2027: Psyr_2027 - epoxide hydrolase, Serine peptidase, MEROPS family S33, at 2,351,440 to 2,352,294
_2027
Psyr_2028: Psyr_2028 - conserved hypothetical protein, at 2,352,422 to 2,353,252
_2028
Position (kb)
2351
2352
2353 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 2350.456 kb on + strand at 2350.456 kb on + strand at 2350.456 kb on + strand at 2350.457 kb on - strand at 2350.457 kb on - strand at 2350.458 kb on + strand at 2350.458 kb on + strand at 2350.458 kb on + strand at 2350.459 kb on - strand at 2350.459 kb on - strand at 2350.459 kb on - strand at 2350.459 kb on - strand at 2350.460 kb on + strand at 2350.460 kb on + strand at 2350.460 kb on + strand at 2350.460 kb on + strand at 2350.460 kb on + strand at 2350.460 kb on + strand at 2350.460 kb on + strand at 2350.460 kb on + strand at 2350.460 kb on + strand at 2350.461 kb on - strand at 2350.461 kb on - strand at 2350.461 kb on - strand at 2350.461 kb on - strand at 2350.461 kb on - strand at 2350.461 kb on - strand at 2350.461 kb on - strand at 2350.461 kb on - strand at 2350.493 kb on + strand at 2350.494 kb on - strand at 2350.494 kb on - strand at 2350.495 kb on + strand at 2350.685 kb on + strand at 2350.685 kb on + strand at 2350.686 kb on - strand at 2350.686 kb on - strand at 2350.719 kb on - strand, within Psyr_2026 at 2351.114 kb on + strand, within Psyr_2026 at 2351.114 kb on + strand, within Psyr_2026 at 2351.190 kb on - strand, within Psyr_2026 at 2351.324 kb on + strand, within Psyr_2026 at 2351.325 kb on - strand, within Psyr_2026 at 2351.643 kb on + strand, within Psyr_2027 at 2351.663 kb on - strand, within Psyr_2027 at 2351.663 kb on - strand, within Psyr_2027 at 2351.677 kb on + strand, within Psyr_2027 at 2351.677 kb on + strand, within Psyr_2027 at 2351.677 kb on + strand, within Psyr_2027 at 2351.677 kb on + strand, within Psyr_2027 at 2351.677 kb on + strand at 2351.678 kb on - strand, within Psyr_2027 at 2352.030 kb on + strand, within Psyr_2027 at 2352.030 kb on + strand, within Psyr_2027 at 2352.031 kb on - strand, within Psyr_2027 at 2352.031 kb on - strand, within Psyr_2027 at 2352.031 kb on - strand, within Psyr_2027 at 2352.071 kb on + strand, within Psyr_2027 at 2352.071 kb on + strand, within Psyr_2027 at 2352.072 kb on - strand, within Psyr_2027 at 2352.078 kb on + strand, within Psyr_2027 at 2352.078 kb on + strand, within Psyr_2027 at 2352.078 kb on + strand, within Psyr_2027 at 2352.079 kb on - strand, within Psyr_2027 at 2352.079 kb on - strand, within Psyr_2027 at 2352.079 kb on - strand, within Psyr_2027 at 2352.142 kb on - strand, within Psyr_2027 at 2352.267 kb on + strand at 2352.267 kb on + strand at 2352.268 kb on - strand at 2352.394 kb on + strand at 2352.394 kb on + strand at 2352.395 kb on - strand at 2352.507 kb on + strand, within Psyr_2028 at 2352.507 kb on + strand, within Psyr_2028 at 2352.508 kb on - strand, within Psyr_2028 at 2352.508 kb on - strand, within Psyr_2028 at 2352.508 kb on - strand, within Psyr_2028 at 2352.684 kb on - strand, within Psyr_2028 at 2352.690 kb on + strand, within Psyr_2028 at 2352.690 kb on + strand, within Psyr_2028 at 2352.691 kb on - strand, within Psyr_2028 at 2352.691 kb on - strand, within Psyr_2028 at 2352.691 kb on - strand, within Psyr_2028 at 2352.839 kb on + strand, within Psyr_2028 at 2352.840 kb on - strand, within Psyr_2028 at 2352.914 kb on + strand, within Psyr_2028 at 2352.914 kb on + strand, within Psyr_2028 at 2352.915 kb on - strand, within Psyr_2028 at 2352.944 kb on + strand, within Psyr_2028 at 2352.945 kb on - strand, within Psyr_2028 at 2353.084 kb on + strand, within Psyr_2028 at 2353.250 kb on + strand at 2353.284 kb on + strand at 2353.285 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 2,350,456 + -2.3 2,350,456 + +0.1 2,350,456 + +0.0 2,350,457 - -1.0 2,350,457 - +4.0 2,350,458 + -0.8 2,350,458 + -0.1 2,350,458 + +0.9 2,350,459 - +0.9 2,350,459 - -1.1 2,350,459 - -1.4 2,350,459 - +1.1 2,350,460 + -0.1 2,350,460 + -2.4 2,350,460 + +2.7 2,350,460 + -1.4 2,350,460 + +0.2 2,350,460 + -3.0 2,350,460 + +0.1 2,350,460 + -1.5 2,350,460 + -2.0 2,350,461 - +0.9 2,350,461 - +4.0 2,350,461 - +2.4 2,350,461 - +1.1 2,350,461 - +4.4 2,350,461 - +1.9 2,350,461 - -2.8 2,350,461 - -1.8 2,350,493 + -0.0 2,350,494 - -1.4 2,350,494 - -2.2 2,350,495 + +4.5 2,350,685 + -0.9 2,350,685 + -1.1 2,350,686 - +0.0 2,350,686 - +3.3 2,350,719 - Psyr_2026 0.10 +0.9 2,351,114 + Psyr_2026 0.59 +2.7 2,351,114 + Psyr_2026 0.59 +5.0 2,351,190 - Psyr_2026 0.69 +0.3 2,351,324 + Psyr_2026 0.85 -2.1 2,351,325 - Psyr_2026 0.85 -0.5 2,351,643 + Psyr_2027 0.24 +3.9 2,351,663 - Psyr_2027 0.26 +0.2 2,351,663 - Psyr_2027 0.26 -1.5 2,351,677 + Psyr_2027 0.28 -0.1 2,351,677 + Psyr_2027 0.28 +3.9 2,351,677 + Psyr_2027 0.28 +1.7 2,351,677 + Psyr_2027 0.28 -3.3 2,351,677 + +1.9 2,351,678 - Psyr_2027 0.28 +3.2 2,352,030 + Psyr_2027 0.69 -0.3 2,352,030 + Psyr_2027 0.69 +1.9 2,352,031 - Psyr_2027 0.69 +1.9 2,352,031 - Psyr_2027 0.69 +3.8 2,352,031 - Psyr_2027 0.69 +1.1 2,352,071 + Psyr_2027 0.74 -0.4 2,352,071 + Psyr_2027 0.74 +0.9 2,352,072 - Psyr_2027 0.74 +0.9 2,352,078 + Psyr_2027 0.75 -0.2 2,352,078 + Psyr_2027 0.75 +4.7 2,352,078 + Psyr_2027 0.75 +0.9 2,352,079 - Psyr_2027 0.75 -1.1 2,352,079 - Psyr_2027 0.75 -1.1 2,352,079 - Psyr_2027 0.75 -1.9 2,352,142 - Psyr_2027 0.82 +2.3 2,352,267 + +2.4 2,352,267 + +2.4 2,352,268 - +2.2 2,352,394 + -2.2 2,352,394 + -2.3 2,352,395 - +1.2 2,352,507 + Psyr_2028 0.10 +0.9 2,352,507 + Psyr_2028 0.10 -2.1 2,352,508 - Psyr_2028 0.10 +0.7 2,352,508 - Psyr_2028 0.10 +2.2 2,352,508 - Psyr_2028 0.10 +3.3 2,352,684 - Psyr_2028 0.32 +0.9 2,352,690 + Psyr_2028 0.32 +0.7 2,352,690 + Psyr_2028 0.32 -3.6 2,352,691 - Psyr_2028 0.32 +1.9 2,352,691 - Psyr_2028 0.32 +0.9 2,352,691 - Psyr_2028 0.32 -1.8 2,352,839 + Psyr_2028 0.50 +3.0 2,352,840 - Psyr_2028 0.50 +0.2 2,352,914 + Psyr_2028 0.59 -0.7 2,352,914 + Psyr_2028 0.59 +4.0 2,352,915 - Psyr_2028 0.59 +1.3 2,352,944 + Psyr_2028 0.63 -0.0 2,352,945 - Psyr_2028 0.63 +2.7 2,353,084 + Psyr_2028 0.80 +0.2 2,353,250 + -0.6 2,353,284 + +0.5 2,353,285 - +2.7
Or see this region's nucleotide sequence