Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2024

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Benzalkonium Chloride 6.25 ug/ml
2,348,926	-		Psyr_2022	0.87	+1.4
2,349,050	+				-1.7
2,349,050	+				+3.3
2,349,207	+		Psyr_2023	0.37	+3.0
2,349,270	+		Psyr_2023	0.55	+0.9
2,349,653	-		Psyr_2024	0.51	-0.5
2,349,714	+		Psyr_2024	0.64	+0.9
2,349,948	-				-0.6
2,349,948	-				+1.4
2,349,948	-				-1.2
2,350,078	-		Psyr_2025	0.31	+3.0
2,350,154	-		Psyr_2025	0.48	+3.4
2,350,177	+		Psyr_2025	0.53	+2.2
2,350,177	+		Psyr_2025	0.53	+1.4
2,350,177	+		Psyr_2025	0.53	+1.9
2,350,177	+		Psyr_2025	0.53	+0.2
2,350,178	-		Psyr_2025	0.54	-1.5
2,350,266	-		Psyr_2025	0.73	-1.5
2,350,266	-		Psyr_2025	0.73	-0.0
2,350,266	-		Psyr_2025	0.73	-0.8
2,350,266	-		Psyr_2025	0.73	-1.7
2,350,266	-		Psyr_2025	0.73	-0.6
2,350,283	+		Psyr_2025	0.77	+0.9
2,350,283	+		Psyr_2025	0.77	+3.0
2,350,283	+		Psyr_2025	0.77	-0.1
2,350,283	+		Psyr_2025	0.77	-2.0
2,350,283	+		Psyr_2025	0.77	-1.9
2,350,283	+		Psyr_2025	0.77	+0.0
2,350,284	-		Psyr_2025	0.77	+1.9
2,350,284	-		Psyr_2025	0.77	-1.4
2,350,284	-		Psyr_2025	0.77	+2.9
2,350,284	-		Psyr_2025	0.77	-3.0
2,350,395	+				+2.4
2,350,395	+				+0.9
2,350,395	+				-1.5
2,350,396	-				+0.8
2,350,456	+				-2.3
2,350,456	+				+0.1
2,350,456	+				+0.0
2,350,457	-				-1.0
2,350,457	-				+4.0
2,350,458	+				-0.8
2,350,458	+				-0.1
2,350,458	+				+0.9
2,350,459	-				+0.9
2,350,459	-				-1.1
2,350,459	-				-1.4
2,350,459	-				+1.1
2,350,460	+				-0.1
2,350,460	+				-2.4
2,350,460	+				+2.7
2,350,460	+				-1.4
2,350,460	+				+0.2
2,350,460	+				-3.0
2,350,460	+				+0.1
2,350,460	+				-1.5
2,350,460	+				-2.0
2,350,461	-				+0.9
2,350,461	-				+4.0
2,350,461	-				+2.4
2,350,461	-				+1.1
2,350,461	-				+4.4
2,350,461	-				+1.9
2,350,461	-				-2.8
2,350,461	-				-1.8
2,350,493	+				-0.0
2,350,494	-				-1.4
2,350,494	-				-2.2
2,350,495	+				+4.5
2,350,685	+				-0.9
2,350,685	+				-1.1
2,350,686	-				+0.0
2,350,686	-				+3.3
2,350,719	-		Psyr_2026	0.10	+0.9